Interaction network and enrichment analysis of genes downregulated in NPAP1 OE
Canned Analysis
FAIR Metrics
0 evaluations
General Information
AccessionDCA00038347
TitleInteraction network and enrichment analysis of genes downregulated in NPAP1 OE
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most downregulated genes identified by applying the Characteristic Direction method comparing gene expression between NPAP1 OE cells and control cells in the cell line: Flp-Inâ???????¢ T-RExâ???????¢ HEK293 cells transgene: NPAP1/C15orf2, doxycycline induced cell type.
Analysis URLhttp://genemania.org/#/search/human/HIST1H1E|SNHG3|RNA18S5|TUG1|SNORA71D|RN7SL2|SNORD57|SNORD14C|SNORA70B|RNU1-1|TUBB|SNORA68|SNORA70|EEF1G|RMRP|RN7SK|CSE1L|PIGM|SNHG1|HSP90AB1|PFN1P2|CBX5|SNORA45A|ACTG1|SNORD5
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorgszeto
CREEDS IDgene:2354
Cell Typecell line: Flp-Inâ???????¢ T-RExâ???????¢ HEK293 cells transgene: NPAP1/C15orf2, doxycycline induced
Gene Symbol (human)NPAP1
Organismhuman
Perturbation TypeOE
Characteristic Direction parameters
Gene Setdownregulated
Gene Set Size50
Control SamplesGSM897030, GSM897031, GSM897032
Perturbed SamplesGSM897027, GSM897028, GSM897029
Tools used in the analysis
Keyword
Dataset Accession
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE36575
Gene Expression Omnibus
Effect of NPAP1/C15orf2 overexpression on transcriptome of HEK293 cells
7
FAIR Evaluation
Sorry, you must be signed in to evaluate this object.