Interaction network and enrichment analysis of genes upregulated in MSR1 KO
Canned Analysis
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General Information
AccessionDCA00038808
TitleInteraction network and enrichment analysis of genes upregulated in MSR1 KO
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between MSR1 KO cells and control cells in the olfactory epithelium cell type.
Analysis URLhttp://genemania.org/#/search/mouse/Igkv6-23|Rpl34|Rpl41|Ubb|Wfdc18|Mup5|Gm13826|Rpl13|Mup4|Tuba1c|Gm10221|Eef1a1|Gm10260|Cyp2a5|Gm12191|Hba-a1|Atp5c1-ps|Rps7|Tpt1|2010107E04Rik|Rps23|Rps16-ps2|Ly6a|S100a5|Cox7c
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis CuratorHollyWoodland
CREEDS IDgene:2671
Cell Typeolfactory epithelium
Gene Symbol (human)MSR1
Gene Symbol (mouse)Msr1
Organismmouse
Perturbation TypeKO
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM78344, GSM78345, GSM78346
Perturbed SamplesGSM80198, GSM80199, GSM80200
Tools used in the analysis
Keyword
Dataset Accession
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE3455
Gene Expression Omnibus
Scavenger receptor A mutant olfactory epithelium response to olfactory bulbectomy: time course
7
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