Interaction network and enrichment analysis of genes upregulated in PSIP1 KD
Canned Analysis
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General Information
AccessionDCA00038924
TitleInteraction network and enrichment analysis of genes upregulated in PSIP1 KD
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between PSIP1 KD cells and control cells in the 293T cells cell type.
Analysis URLhttp://genemania.org/#/search/human/UBE2S|UQCRFS1|BEX1|RPL36|TRIM28|HOXA5|HOXA10|SNAI2|RPS5|ADI1|DDX39A|LSM7|SNRPD2|DDX21|RPL13AP5|FTL|ZIC2|OAT|FBL|POLR2E|PPA1|HOXC6|HSPA8|HMGN3|PSMD8
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcadimo
CREEDS IDgene:276
Cell Type293T cells
Gene Symbol (human)PSIP1
Gene Symbol (mouse)Psip1
Organismhuman
Perturbation TypeKD
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM78972, GSM78973, GSM78974, GSM78975
Perturbed SamplesGSM78968, GSM78969, GSM78970, GSM78971
Tools used in the analysis
Keyword
Dataset Accession
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Datasets used in the analysis
Keyword
Tool Name
GSE3485
Gene Expression Omnibus
Lens epithelium-derived growth factor knockdown
7
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