Interaction network and enrichment analysis of genes upregulated in TCF4 Deletion
Canned Analysis
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General Information
AccessionDCA00039106
TitleInteraction network and enrichment analysis of genes upregulated in TCF4 Deletion
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between TCF4 Deletion cells and control cells in the PDCs cell type.
Analysis URLhttp://genemania.org/#/search/mouse/H2-K1|LOC100048552|LOC544903|Ccl4|Gm10269|Rps7|Rpl36a|LOC100044627|Fosb|Igj|Fth1|Cd14|Zfp36|Rpl32|Upb1|Dusp1|Pcbp1|H2-DMb2|Gm6402|H2-Oa|Ms4a6c|Il1b|Ndufa6|Ccr6|Cox7a2
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorames88cav
CREEDS IDgene:2866
Cell TypePDCs
Gene Symbol (human)TCF4
Gene Symbol (mouse)Tcf4
Organismmouse
Perturbation TypeDeletion
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM314209, GSM314210
Perturbed SamplesGSM314211, GSM314212
Tools used in the analysis
Keyword
Dataset Accession
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE12505
Gene Expression Omnibus
Plasmacytoid dendritic cell response to transcription factor E2-2
7
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