Interaction network and enrichment analysis of genes upregulated in RFWD2 KO
Canned Analysis
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General Information
AccessionDCA00039306
TitleInteraction network and enrichment analysis of genes upregulated in RFWD2 KO
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between RFWD2 KO cells and control cells in the Embrios cell type.
Analysis URLhttp://genemania.org/#/search/mouse/Bnip3|Slc2a1|Ddit4|Gpi1|Igfbp2|Tpi1|Pgk1|Pkm|Erdr1|Mt2|Ldha|Bsg|Hspa1b|Kdm3a|2410006H16Rik|Eno1b|Hk2|Slc2a3|Eif4a2|Gm9790|Gm10128|Adm|Pgam1|Ero1l|Clk1
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis CuratorJuliana
CREEDS IDgene:2994
Cell TypeEmbrios
Gene Symbol (human)RFWD2
Gene Symbol (mouse)Rfwd2
Organismmouse
Perturbation TypeKO
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM463039, GSM463040
Perturbed SamplesGSM463041, GSM463042
Tools used in the analysis
Keyword
Dataset Accession
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Datasets used in the analysis
Keyword
Tool Name
GSE18636
Gene Expression Omnibus
Transcriptomic profiling of Cop1-deficient embryos
7
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