Interaction network and enrichment analysis of genes upregulated in NEUROD1 Deficiency
Canned Analysis
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General Information
AccessionDCA00039870
TitleInteraction network and enrichment analysis of genes upregulated in NEUROD1 Deficiency
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between NEUROD1 Deficiency cells and control cells in the Pineal glands of neonates cell type.
Analysis URLhttp://genemania.org/#/search/mouse/H19|Basp1|Rps27a|E430024C06Rik|Pmp22|Akap12|Rpl31-ps17|St5|Nov|Gm13430|Rpl31|Eef1a1|A730098P11Rik|LOC100503721|Crisp2|Fat1|Rps16-ps2|Rplp1|Jdp2|Sepp1|Rbm45|Pdcd4|Hbb-bs|Rpl10|Pdk4
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorcadimo
CREEDS IDgene:639
Cell TypePineal glands of neonates
Gene Symbol (human)NEUROD1
Gene Symbol (mouse)Neurod1
Organismmouse
Perturbation TypeDeficiency
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM139983, GSM139984, GSM139985
Perturbed SamplesGSM139986, GSM139987, GSM139988
Tools used in the analysis
Keyword
Dataset Accession
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE6030
Gene Expression Omnibus
NeuroD1 deficiency effect on the pineal gland
7
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