Gene expression profiling of six MEF cell genotypes (wild type, 2SP+/-, 2SP-/-, SMAD3+/-, SMAD3-/-, and 2SP+/-; SMAD3+/-)
Transcriptomics Dataset
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General Information
AccessionGSE69750
TitleGene expression profiling of six MEF cell genotypes (wild type, 2SP+/-, 2SP-/-, SMAD3+/-, SMAD3-/-, and 2SP+/-; SMAD3+/-)
DescriptionGene expression profiling was carried out in six (wild type, 2SP+/-, 2SP-/-, SMAD3+/-, SMAD3-/- and 2SP+/-/ SMAD3+/-) different mouse knockout embryonic fibroblast (MEF) cells. Beta-2-spectrin (2SP) is a dynamic intracellular non-pleckstrin homology (PH)-domain protein that belongs to a family of polypeptides that have been implicated in conferring cell polarity. Spectrins have been linked to multiple signaling pathways, including cell cycle regulation, DNA repair and TGF signaling. In this study, we report a major role of the TGF/Smad3 adaptor 2-Spectrin in conserving genomic integrity from alcohol-induced DNA damage and describe a novel pathway that protects genomes from genotoxic stresses. To determine the mechanism for the oncogenic switch, and whether it is related to the role of 2SP in TGF- signaling transduction or secondary to its cytoskeletal functions, we analyzed disruption of two elements of the TGF- pathway by generating double heterozygous Sptbn1+//Smad3+/ mice.
Landing Pagehttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69750
RepositoryGene Expression Omnibus
Tools used to analyze the dataset

Dataset Accession

ARCHS4
Published September 2017
ARCHS4 provides access to gene counts from HiSeq 2000 and HiSeq 2500 platforms for human and mouse experiments from GEO ...
4645
Clustergrammer
Published October 2017
Web-based tool for visualizing and analyzing high-dimensional data as interactive and shareable heatmaps
4645
Canned Analyses generated with the dataset

Dataset Accession
Tool Name

Interactive heatmap visualization of RNA-seq dataset GSE69750
Highly interactive web-based heatmap visualization of the top 500 most variable genes in t...
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