General Information
| Description | Flexible circular visualization of genome-associated data with BioPerl and SVG |
| Homepage | http://clovr.org |
Publications
Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG
Summary:
Circleator is a Perl application that generates circular figures of genome-associated data. It leverages BioPerl to support standard annotation and sequence file formats and produces publication-quality SVG output. It is designed to be both flexible and easy to use. It includes a library of circular track types and predefined configuration files for common use-cases, including. (i) visualizing gene annotation and DNA sequence data from a GenBank flat file, (ii) displaying patterns of gene conservation in related microbial strains, (iii) showing Single Nucleotide Polymorphisms (SNPs) and indels relative to a reference genome and gene set and (iv) viewing RNA-Seq plots.
Availability and implementation:
Circleator is freely available under the Artistic License 2.0 from http://jonathancrabtree.github.io/Circleator/ and is integrated with the CloVR cloud-based sequence analysis Virtual Machine (VM), which can be downloaded from http://clovr.org or run on Amazon EC2.
Contact:
jcrabtree@som.umaryland.edu
Supplementary information:
Supplementary data are available at Bioinformatics online.
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