General Information
| Description | A toolkit to summarize, annotate and visualize genomic intervals |
| Homepage | http://bioinformatics.mdc-berlin.de/genomation |
Publications
genomation: a toolkit to summarize, annotate and visualize genomic intervals
Summary:
Biological insights can be obtained through computational integration of genomics data sets consisting of diverse types of information. The integration is often hampered by a large variety of existing file formats, often containing similar information, and the necessity to use complicated tools to achieve the desired results. We have built an R package, genomation, to expedite the extraction of biological information from high throughput data. The package works with a variety of genomic interval file types and enables easy summarization and annotation of high throughput data sets with given genomic annotations.
Availability and implementation:
The software is currently distributed under MIT artistic license and freely available at http://bioinformatics.mdc-berlin.de/genomation, and through the Bioconductor framework.
Contact:
dirk.schubeler@fmi.ch, chm2042@med.cornell.edu, altuna.akalin@fmi.ch, or aakalin@gmail.com
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