General Information
| Description | A python interface to contact predictions |
| Homepage | http://www.conkit.org |
Publications
ConKit: a python interface to contact predictions
Summary:
Recent advances in protein residue contact prediction algorithms have led to the emergence of many new methods and a variety of file formats. We present ConKit, an open source, modular and extensible Python interface which allows facile conversion between formats and provides an interface to analyses of sequence alignments and sets of contact predictions.
Availability and Implementation:
ConKit is available via the Python Package Index. The documentation can be found at http://www.conkit.org. ConKit is licensed under the BSD 3-Clause.
Contact:
hlfsimko@liverpool.ac.uk or drigden@liverpool.ac.uk
:
Supplementary informationSupplementary data are available at Bioinformatics online.
Related Tools
PconsC
Published June 2013
Combination of direct information methods and alignments improves contact prediction
GDFuzz3D
Published June 2015
A method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function
RC
Published April 2016
Improving ab initio residue contact map prediction using dynamic fusion strategy and Gaussian noise filter
FAIR Evaluation
Sorry, you must be signed in to evaluate this object.
