CytoModeler
Computational Tool
FAIR Metrics
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General Information
DescriptionA tool for bridging large-scale network analysis and dynamic quantitative modeling
Homepagehttp://vrac.iastate.edu/~jlv/cytomodeler/
Publications
CytoModeler: a tool for bridging large-scale network analysis and dynamic quantitative modeling
Tian Xia; John Van Hemert; Julie A. Dickerson
Summary: CytoModeler is an open-source Java application based on the Cytoscape platform. It integrates large-scale network analysis and quantitative modeling by combining omics analysis on the Cytoscape platform, access to deterministic and stochastic simulators, and static and dynamic network context visualizations of simulation results.
Availability: Implemented in Java, CytoModeler runs with Cytoscape 2.6 and 2.7. Binaries, documentation and video walkthroughs are freely available at http://vrac.iastate.edu/~jlv/cytomodeler/.
Contact: julied@iastate.edu; netscape@iastate.edu
Supplementary Information: Supplementary data are available at Bioinformatics online.
DOI: https://doi.org/10.1093/bioinformatics/btr150
Metrics:
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