General Information
| Description | Ultra-fast permutation-based gene set analysis |
| Homepage | https://github.com/billyhw/GSALightning |
Publications
GSA-Lightning: ultra-fast permutation-based gene set analysis
Summary:
The computational speed of many gene set analysis methods can be slow due to the computationally demanding permutation step. This article introduces GSA-Lightning, a fast implementation of permutation-based gene set analysis. GSA-Lightning achieves significant speedup compared with existing methods, particularly when the number of gene sets and permutations are large.
Availability and implementation:
The GSA-Lightning R package is available on Github at https://github.com/billyhw/GSALightning and on R Bioconductor. The package also contains a comprehensive user's guide with a step-by-step tutorial vignette.
Contact:
weidong.tian@fudan.edu.cn
Supplementary information:
Supplementary data are available at Bioinformatics online.
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