General Information
| Description | Converting MATLAB ODE models to SBML |
| Homepage | http://www.gnu.org/licenses/lgpl-2.1.html |
Publications
MOCCASIN: converting MATLAB ODE models to SBML
Summary:
MATLAB is popular in biological research for creating and simulating models that use ordinary differential equations (ODEs). However, sharing or using these models outside of MATLAB is often problematic. A community standard such as Systems Biology Markup Language (SBML) can serve as a neutral exchange format, but translating models from MATLAB to SBML can be challenging—especially for legacy models not written with translation in mind. We developed MOCCASIN ( Model ODE Converter for Creating Automated SBML INteroperability ) to help. MOCCASIN can convert ODE-based MATLAB models of biochemical reaction networks into the SBML format.
Availability and implementation:
MOCCASIN is available under the terms of the LGPL 2.1 license ( http://www.gnu.org/licenses/lgpl-2.1.html ). Source code, binaries and test cases can be freely obtained from https://github.com/sbmlteam/moccasin .
Contact
: mhucka@caltech.edu
Supplementary information:
More information is available at https://github.com/sbmlteam/moccasin .
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