General Information
| Description | A Cytoscape plugin to analyze the robustness of dynamics and feedforward/feedback loop structures of biological networks |
| Homepage | http://netds.sourceforge.net/ |
Publications
NetDS: a Cytoscape plugin to analyze the robustness of dynamics and feedforward/feedback loop structures of biological networks
Summary:
NetDS is a novel Cytoscape plugin that conveniently simulates dynamics related to robustness, and examines structural properties with respect to feedforward/feedback loops. It can evaluate how robustly a network sustains a stable state against mutations by employing a Boolean network model. In addition, the plugin can examine all feedforward/feedback loops appearing in a network and determine whether or not a pair of loops is coupled. Random networks can also be generated to evaluate whether or not an interesting finding in real biological networks is significantly random.
Availability:
NetDS is freely available for non-commercial purposes at http://netds.sourceforge.net/.
Contact:
kwonyk@ulsan.ac.kr
Supplementary information:
Supplementary data are available at Bioinformatics online.
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