RuleBender
Computational Tool
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General Information
DescriptionA visual interface for rule-based modeling
Homepagehttp://rulebender.org
Publications
RuleBender: a visual interface for rule-based modeling
Wen Xu; Adam M. Smith; James R. Faeder; G. Elisabeta Marai
Summary: Rule-based modeling (RBM) is a powerful and increasingly popular approach to modeling intracellular biochemistry. Current interfaces for RBM are predominantly text-based and command-line driven. Better visual tools are needed to make RBM accessible to a broad range of users, to make specification of models less error prone and to improve workflows. We present RULEBENDER, an open-source visual interface that facilitates interactive debugging, simulation and analysis of RBMs.
Availability: RULEBENDER is freely available for Mac, Windows and Linux at http://rulebender.org.
Contact: faeder@pitt.edu; marai@cs.pitt.edu
Supplementary information: Supplementary data are available at Bioinformatics online.
DOI: https://doi.org/10.1093/bioinformatics/btr197
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