General Information
| Description | Flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures |
| Homepage | http://bioconductor.org/packages/release/bioc/html/Sushi.html |
Publications
Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures
Motivation:
Interpretation and communication of genomic data require flexible and quantitative tools to analyze and visualize diverse data types, and yet, a comprehensive tool to display all common genomic data types in publication quality figures does not exist to date. To address this shortcoming, we present Sushi.R, an R/Bioconductor package that allows flexible integration of genomic visualizations into highly customizable, publication-ready, multi-panel figures from common genomic data formats including Browser Extensible Data (BED), bedGraph and Browser Extensible Data Paired-End (BEDPE). Sushi.R is open source and made publicly available through GitHub ( https://github.com/dphansti/Sushi ) and Bioconductor ( http://bioconductor.org/packages/release/bioc/html/Sushi.html ).
Contact:
mpsnyder@stanford.edu or dphansti@stanford.edu
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