General Information
| Description | Fast computation of semantic similarity and relatedness using biomedical ontologies |
| Homepage | http://www.semantic-measures-library.org |
Publications
The semantic measures library and toolkit: fast computation of semantic similarity and relatedness using biomedical ontologies
Summary:
The semantic measures library and toolkit are robust open-source and easy to use software solutions dedicated to semantic measures. They can be used for large-scale computations and analyses of semantic similarities between terms/concepts defined in terminologies and ontologies. The comparison of entities (e.g. genes) annotated by concepts is also supported. A large collection of measures is available. Not limited to a specific application context, the library and the toolkit can be used with various controlled vocabularies and ontology specifications (e.g. Open Biomedical Ontology, Resource Description Framework). The project targets both designers and practitioners of semantic measures providing a JAVA library, as well as a command-line tool that can be used on personal computers or computer clusters.
Availability and implementation:
Downloads, documentation, tutorials, evaluation and support are available at http://www.semantic-measures-library.org.
Contact:
harispe.sebastien@gmail.com
Related Tools
SICAGO
Published March 2010
Semi-supervised cluster analysis using semantic distance between gene pairs in Gene Ontology
GOssTo
Published March 2014
A stand-alone application and a web tool for calculating semantic similarities on the Gene Ontology
A-DaGO-Fun
Published October 2015
An adaptable Gene Ontology semantic similarity-based functional analysis tool
BIOSSES
Published July 2017
A semantic sentence similarity estimation system for the biomedical domain
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