BioJupies Automatically Generates RNA-seq Data Analysis Notebooks
With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface
To acknowledge BioJupies in your publications, please use the following reference:
Torre, D., Lachmann, A., and Ma’ayan, A. (2018). BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud. Cell Systems.
BioJupies now supports user accounts! Sign in from the top right corner of the page for access to unlimited private notebooks, RNA-seq datasets and alignment jobs.
How to Create a Notebook?
1. Upload or Fetch Data
Select from thousands of ready-to-analyze RNA-seq datasets, or upload your own
2. Select Tools
Choose from multiple data analysis and visualization tools, or contribute your own code
Create, access and share your analysis notebooks through a permanent and public URL
Customize Your Analysis
Upload Your Own Data
Generate tailored analysis notebooks from your RNA-seq datasets
Contribute Your Code
Add and share your own computational tools as BioJupies plugins
Rerun Your Notebooks
Download, run and customize your analysis notebooks using a Docker container
Sign in to BioJupies for access to unlimited private notebooks, datasets and alignment jobs.
: BioJupies uses Google for authentication purposes only. The application will
have access to your private data, and will not send you any e-mails.