Interaction network and enrichment analysis of genes upregulated in swine influenza
Canned Analysis
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General Information
AccessionDCA00033794
TitleInteraction network and enrichment analysis of genes upregulated in swine influenza
DescriptionThe analysis explores the gene interaction network and pathway enrichment of the top 50 most upregulated genes identified by applying the Characteristic Direction method comparing gene expression between cells affected by swine influenza and healthy control cells in the peripheral blood cell type.
Analysis URLhttp://genemania.org/#/search/human/S100A8|IGHG1|DEFA1B|IGLJ3|GAPDH|LTF|B2M|IGJ|SRGN|SCFV|IGHV3-48|MMP8|ALAS2|SELL|CST7|S100A9|GYG1|TMSB4XP6|HIST1H2BM|HSP90B1|PGD|TMSB4X|MYL6|SLC2A3|HIST1H1E
Upload DateSeptember 20, 2017
Uploadermaayanlab
Metadata
Analysis Curatorvcogliani
CREEDS IDdz:514
Cell Typeperipheral blood
DO IDDOID:0050211
Disease Nameswine influenza
Organismhuman
Characteristic Direction parameters
Gene Setupregulated
Gene Set Size50
Control SamplesGSM670463, GSM670464, GSM670465, GSM670466, GSM670467, GSM670468, GSM670469
Perturbed SamplesGSM670449, GSM670450, GSM670451, GSM670452, GSM670453, GSM670454, GSM670455, GSM670456, GSM670457, GSM670458, GSM670459, GSM670460, GSM670461, GSM670462
Tools used in the analysis
Keyword
Dataset Accession
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
Datasets used in the analysis
Keyword
Tool Name
GSE27131
Gene Expression Omnibus
Severe pandemic H1N1 influenza effect on peripheral blood: time course
7
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