CytoSEED
Computational Tool
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General Information
DescriptionA Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED
Homepagehttp://sourceforge.net/projects/cytoseed/
Publications
CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED
Matthew DeJongh; Benjamin Bockstege; Paul Frybarger; Nicholas Hazekamp; Joshua Kammeraad; Travis McGeehan
Summary: CytoSEED is a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created using the Model SEED. The CytoSEED plugin enables users of the Model SEED to create informative visualizations of the reaction networks generated for their organisms of interest. These visualizations are useful for understanding organism-specific biochemistry and for highlighting the results of flux variability analysis experiments.
Availability and Implementation: Freely available for download on the web at http://sourceforge.net/projects/cytoseed/. Implemented in Java SE 6 and supported on all platforms that support Cytoscape.
Contact: dejongh@hope.edu
Supplementary information: Installation instructions, a tutorial, and full-size figures are available at http://www.cs.hope.edu/cytoseed/.
DOI: https://doi.org/10.1093/bioinformatics/btr719
Metrics:
7
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