Gene expression profiles of patients with schizophrenia, bipolar disorder and healthy controls
Transcriptomics Dataset
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General Information
AccessionGSE62191
TitleGene expression profiles of patients with schizophrenia, bipolar disorder and healthy controls
DescriptionSchizophrenia (SZ) and bipolar disorder (BD) are severe psychiatric conditions, with a lifetime prevalence of about 1%%. Both disorders have a neurodevelopment component, with onset of symptoms occurring most frequently during late adolescence or early adulthood. Genetic findings indicate the existence of an overlap in genetic susceptibility across the disorders. These gene expression profiles were used to identify the molecular mechanisms that differentiate SZ and BP from healthy controls but also that distinguish both from healthy individuals. They were also used to expand an analysis from an experiment that searched molecular alterations in human induced pluripotent stem cells derived from fibroblasts from control subject and individual with schizophrenia and further differentiated to neuron to identify genes relevant for the development of schizophrenia (GSE62105).
Landing Pagehttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62191
RepositoryGene Expression Omnibus
Tools used to analyze the dataset

Keyword
Dataset Accession

Enrichr
Published May 2016
A comprehensive gene set enrichment analysis web server 2016 update
7759
65
Characteristic Direction
Published March 2014
A geometrical multivariate approach to identify differentially expressed genes
26829
L1000CDS2
Published August 2016
An ultra-fast LINCS L1000 Characteristic Direction signature search engine
7756
GeneMANIA
Published June 2010
Biological network integration for gene prioritization and predicting gene function
7435
PAEA
Published November 2015
Enrichment analysis tool implementing the principal angle method
3879
Canned Analyses generated with the dataset

Dataset Accession
Tool Name
Direction
Disease Name
Geneset

Interaction network and enrichment analysis of genes downregulated in schizophrenia
The analysis explores the gene interaction network and pathway enrichment of the top 50 mo...
Interaction network and enrichment analysis of genes upregulated in schizophrenia
The analysis explores the gene interaction network and pathway enrichment of the top 50 mo...
Interaction network and enrichment analysis of genes downregulated in bipolar disorder
The analysis explores the gene interaction network and pathway enrichment of the top 50 mo...
Interaction network and enrichment analysis of genes upregulated in bipolar disorder
The analysis explores the gene interaction network and pathway enrichment of the top 50 mo...
Small molecules which mimic schizophrenia
The L1000 database was queried in order to identify small molecule perturbations which mim...
Small molecules which reverse schizophrenia
The L1000 database was queried in order to identify small molecule perturbations which rev...
Small molecules which mimic bipolar disorder
The L1000 database was queried in order to identify small molecule perturbations which mim...
Small molecules which reverse bipolar disorder
The L1000 database was queried in order to identify small molecule perturbations which rev...
Enrichment analysis of genes dysregulated in schizophrenia
An enrichment analysis was performed on the top most dyresgulated genes determined by appl...
Enrichment analysis of genes dysregulated in bipolar disorder
An enrichment analysis was performed on the top most dyresgulated genes determined by appl...
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