Harmonizome 3.0

From ESCAPE

Sets of target genes of transcription factors from published ChIP-chip, ChIP-seq, and other transcription factor binding site profiling studies;sets of differentially expressed genes following perturbation of a protein from gene expression data in GEO; sets of interacting proteins from high- and low-throughput protein-protein interaction studies; sets of targets of microRNAs from public databases, computationally predicted or experimentally verified

From Hub Proteins

Sets of proteins interacting with hub proteins aggregated from data

From SILAC Phosphoproteomics

Phosphorylation levels of proteins in cell lines following drug treatment

From SILAC Phosphoproteomics

Phosphorylation levels of proteins in cell lines following genetic perturbation (knockdown, knockout, over-expression, mutation)

From SILAC Phosphoproteomics

Phosphorylation levels of proteins in cell lines following ligand treatment

From GlyGen

Proteins glycosylated by saccharide ligands from glycosylation site citations

From COMPARTMENTS

Protein subcellular localization evidence scores by manual literature curation

From COMPARTMENTS

Protein subcellular localization evidence scores by integrating experimental data

From COMPARTMENTS

Gene-cellular compartment co-occurrence scores from text-mining biomedical abstracts

From LOCATE

Subcellular localization of proteins from low-throughput or high-throughput protein localization assays

From LOCATE

Subcellular localization of proteins by sequence similarity to localization sequences

From COMPARTMENTS

Protein subcellular localization evidence scores by manual literature curation

From COMPARTMENTS

Protein subcellular localization evidence scores by integrating experimental data

From COMPARTMENTS

Gene-cellular compartment co-occurrence scores from text-mining biomedical abstracts

From Cell Maps for AI

Protein localization assemblies constructed from integrating AP-MS biomolecular interaction and IF imaging data