Name

MoTrPAC Rat Endurance Exercise Training Dataset

From Molecular Transducers of Physical Activity Consortium

RNA-seq gene expression profiles for rat tissue samples across 4 time points and 19 tissues

Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles Dataset

From Allen Brain Atlas

mRNA expression profiles for adult mouse brain tissues spanning ~2000 anatomically defined brain structures

BioGPS Mouse Cell Type and Tissue Gene Expression Profiles Dataset

From BioGPS

mRNA expression profiles for mouse tissues and cell types

MGI Mouse Phenotype Associations 2023 Dataset

From Mammalian Phenotype Ontology

Observed phenotypes of transgenic mice collected from mouse phenotyping studies

IMPC Knockout Mouse Phenotypes Dataset

From International Mouse Phenotyping Consortium

Observed phenotypes of mice following gene knockout

PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations Dataset

From PerturbAtlas

Gene expression profiles for cell lines, cell types, tissues, and models following genetic perturbation (knockdown, knockout, knockin, over-expression, mutation, and multi-condition)

JASPAR Predicted Mouse Transcription Factor Targets 2025 Dataset

From Jaspar PWMs

Target genes of mouse transcription factors predicted using known transcription factor binding site motifs