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ESCAPE Omics Signatures of Genes and Proteins for Stem Cells DatasetFrom ESCAPE Sets of target genes of transcription factors from published ChIP-chip, ChIP-seq, and other transcription factor binding site profiling studies;sets of differentially expressed genes following perturbation of a protein from gene expression data in GEO; sets of interacting proteins from high- and low-throughput protein-protein interaction studies; sets of targets of microRNAs from public databases, computationally predicted or experimentally verified |
Pathway Commons Protein-Protein Interactions DatasetFrom Pathway Commons Protein-protein interactions from low-throughput or high-throughput studies aggregated by Pathway Commons from the following databases: Reactome, NCI Pathways, PhosphoSite, HumanCyc, HPRD, PANTHER, DIP, BioGRID, IntAct, BIND, Transfac, MiRTarBase, Drugbank, Recon X, Comparative Toxicogenomics Database, and KEGG |
PFOCR Pathway Figure Associations 2023 Dataset (Archived)From Pathway Figure Optical Character Recognition Sets of genes/proteins extracted from pathway figures in research publications using optical character recognition |
PFOCR Pathway Figure Associations 2024 DatasetFrom Pathway Figure Optical Character Recognition Sets of genes/proteins extracted from pathway figures in research publications using optical character recognition, updated for 2024 |
PID Pathways DatasetFrom Pathway Interaction Database Sets of proteins participating in pathways from PID |