Name

Virus MINT Protein-Virus Interactions Dataset

From Virus MINT

Interactions between viruses and human proteins manually curated from literature

Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures Dataset

From Replogle et al., Cell, 2022

Gene expression profiles in the K562 cell line following CRISPRi genetic perturbation

Virus MINT Protein-Viral Protein Interactions Dataset

From Virus MINT

Interactions between viral and human proteins manually curated from literature

ChEA Transcription Factor Binding Site Profiles Dataset (Archived)

From ChIP-X Enrichment Analysis

Transcription factor binding site profiles from published ChIP-chip, ChIP-seq, and other transcription factor functional studies

ChEA Transcription Factor Targets Dataset

From ChIP-X Enrichment Analysis

Target genes of transcription factors from published ChIP-chip, ChIP-seq, and other transcription factor binding site profiling studies

ENCODE Transcription Factor Binding Site Profiles Dataset

From Encyclopedia of DNA Elements

Transcription factor binding site profiles for cell lines

ENCODE Transcription Factor Targets Dataset

From Encyclopedia of DNA Elements

Target genes of transcription factors from transcription factor binding site profiles

GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations Dataset

From Gene Expression Omnibus

mRNA expression profiles for cell lines or tissues following transcription factor perturbation (inhibition, activation, knockdown, knockout, over-expression, mutation)

JASPAR Predicted Transcription Factor Targets Dataset (Archived)

From Jaspar PWMs

Target genes of transcription factors predicted using known transcription factor binding site motifs

MotifMap Predicted Transcription Factor Targets Dataset

From MotifMap

Target genes of transcription factors predicted using known transcription factor binding site motifs

KnockTF Gene Expression Profiles with Transcription Factor Perturbations Dataset

From knockTF

Gene expression profiles for cell lines or tissues following transcription factor perturbation (knockdown/knockout)

ChEA Transcription Factor Targets 2022 Dataset

From ChIP-X Enrichment Analysis

Target genes of transcription factors from published ChIP-chip, ChIP-seq, and other transcription factor binding site profiling studies

JASPAR Predicted Human Transcription Factor Targets 2025 Dataset

From Jaspar PWMs

Target genes of human transcription factors predicted using known transcription factor binding site motifs

JASPAR Predicted Mouse Transcription Factor Targets 2025 Dataset

From Jaspar PWMs

Target genes of mouse transcription factors predicted using known transcription factor binding site motifs

Rummagene Transcription Factor Associations 2026 Dataset

From Rummagene

Sets of genes regulated by transcription factors by mining supplemental materials

TCGA Signatures of Differentially Expressed Genes for Tumors Dataset

From The Cancer Genome Atlas

mRNA expression profiles for tumor and normal tissue samples