Harmonizome 3.0

From <strong>Pathwaystrong> Commons

Prote<strong>instrong>-prote<strong>instrong> <strong>instrong>teractions from low-throughput or high-throughput studies aggregated by <strong>Pathwaystrong> Commons from the follow<strong>instrong>g databases: Reactome, NCI <strong>Pathwaystrong>s, PhosphoSite, HumanCyc, HPRD, PANTHER, DIP, BioGRID, <strong>Instrong>tAct, BIND, Transfac, MiRTarBase, Drugbank, Recon X, Comparative Toxicogenomics Database, and KEGG

From <strong>Pathwaystrong> Figure Optical Character Recognition

Sets of genes/prote<strong>instrong>s extracted from <strong>pathwaystrong> figures <strong>instrong> research publications us<strong>instrong>g optical character recognition

From <strong>Pathwaystrong> Figure Optical Character Recognition

Sets of genes/prote<strong>instrong>s extracted from <strong>pathwaystrong> figures <strong>instrong> research publications us<strong>instrong>g optical character recognition, updated for 2024

From Comparative Toxicogenomics Database

Disease-gene <strong>instrong>teractions from manually curated literature

From DISEASES

Disease gene evidence scores by manual literature curation

From DISEASES

Disease gene evidence scores by <strong>instrong>tegrat<strong>instrong>g experimental data (GWAS)

From DISEASES

Gene-disease co-occurrence scores from text-m<strong>instrong><strong>instrong>g biomedical abstracts

From Genetic Association Database

Gene-disease associations curated from genetic association studies

From Genetic Association Database

Gene-disease associations curated from genetic association studies

From GWASdb

SNP-disease association p-values curated from published GWAS

From Human Phenotype Ontology

Phenotype-caus<strong>instrong>g gene mutations of human phenotypes from disease knowledgebases

From Onl<strong>instrong>e Mendelian <strong>Instrong>heritance <strong>instrong> Man

Disease- or phenotype-caus<strong>instrong>g gene mutations for heritable human diseases or phenotypes curated from biomedical publications

From PhosphoSitePlus

Disease-phosphosite associations curated from literature

From DisGeNET

Gene-disease associations sourced from curated repositories, GWAS catalogues, animal models and the scientific literature

From DISEASES

Disease gene evidence scores by manual literature curation

From DISEASES

Disease gene evidence scores by <strong>instrong>tegrat<strong>instrong>g experimental data (GWAS)

From DISEASES

Gene-disease co-occurrence scores from text-m<strong>instrong><strong>instrong>g biomedical abstracts

From <strong>Pathwaystrong> <strong>Instrong>teraction Database

Sets of prote<strong>instrong>s participat<strong>instrong>g <strong>instrong> <strong>pathwaystrong>s from PID