Harmonizome 3.0

From Connectivity Map

mRNA expression prong>ofong>iles for cell lines following chemical perturbation

From ESCAPE

Sets ong>ofong> target genes ong>ofong> transcription factors from published ChIP-chip, ChIP-seq, and other transcription factor binding site prong>ofong>iling studies;sets ong>ofong> differentially expressed genes following perturbation ong>ofong> a protein from gene expression data in GEO; sets ong>ofong> interacting proteins from high- and low-throughput protein-protein interaction studies; sets ong>ofong> targets ong>ofong> microRNAs from public databases, computationally predicted or experimentally verified

From Gene Expression Omnibus

mRNA expression prong>ofong>iles for cell lines or tissues following disease perturbation

From Gene Expression Omnibus

mRNA expression prong>ofong>iles for cell lines or tissues following genetic perturbation (knockdown, knockout, over-expression, mutation)

From Gene Expression Omnibus

mRNA expression prong>ofong>iles for cell lines or tissues following kinase perturbation (inhibition, activation, knockdown, knockout, over-expression, mutation)

From Gene Expression Omnibus

mRNA expression prong>ofong>iles for cell lines or tissues following small molecule perturbation

From Gene Expression Omnibus

mRNA expression prong>ofong>iles for cell lines or tissues following transcription factor perturbation (inhibition, activation, knockdown, knockout, over-expression, mutation)

From Gene Expression Omnibus

mRNA expression prong>ofong>iles for cell lines or tissues following viral infection

From LINCS L1000 Connectivity Map

mRNA expression prong>ofong>iles for cell lines following small molecule perturbation

From Molecular Signatures Database

Oncogenic signatures ong>ofong> genes differentially expressed following cancer gene perturbations

From The Cancer Genome Atlas

mRNA expression prong>ofong>iles for tumor and normal tissue samples

From PerturbAtlas

Gene expression prong>ofong>iles for cell lines, cell types, tissues, and models following genetic perturbation (knockdown, knockout, knockin, over-expression, mutation, and multi-condition)

From PerturbAtlas

Gene expression prong>ofong>iles for cell lines, cell types, tissues, and models following genetic perturbation (knockdown, knockout, knockin, over-expression, mutation, and multi-condition)

From Kyoto Encyclopedia ong>ofong> Genes and Genomes

Sets ong>ofong> proteins participating in pathways from KEGG

From Kyoto Encyclopedia ong>ofong> Genes and Genomes

Sets ong>ofong> proteins participating in pathways from KEGG