Name

Tabula Sapiens Gene-Cell Associations Dataset

From Tabula Sapiens

Gene expression data from Tabula Sapiens scRNA-seq counts

Pathway Commons Protein-Protein Interactions Dataset

From Pathway Commons

Protein-protein interactions from low-throughput or high-throughput studies aggregated by Pathway Commons from the following databases: Reactome, NCI Pathways, PhosphoSite, HumanCyc, HPRD, PANTHER, DIP, BioGRID, IntAct, BIND, Transfac, MiRTarBase, Drugbank, Recon X, Comparative Toxicogenomics Database, and KEGG

PFOCR Pathway Figure Associations 2023 Dataset (Archived)

From Pathway Figure Optical Character Recognition

Sets of genes/proteins extracted from pathway figures in research publications using optical character recognition

PFOCR Pathway Figure Associations 2024 Dataset

From Pathway Figure Optical Character Recognition

Sets of genes/proteins extracted from pathway figures in research publications using optical character recognition, updated for 2024

NURSA Protein Complexes Dataset

From Nuclear Receptor Signaling Atlas

Proteins identified in complexes isolated from cultured cells

NURSA Protein-Protein Interactions Dataset

From Nuclear Receptor Signaling Atlas

Protein-protein interactions inferred from membership in complexes

PID Pathways Dataset

From Pathway Interaction Database

Sets of proteins participating in pathways from PID