Name

MSigDB Cancer Gene Co-expression Modules Dataset

From Molecular Signatures Database

Computational signatures of genes co-expressed with cancer related genes

MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations Dataset

From Molecular Signatures Database

Oncogenic signatures of genes differentially expressed following cancer gene perturbations

Pathway Commons Protein-Protein Interactions Dataset

From Pathway Commons

Protein-protein interactions from low-throughput or high-throughput studies aggregated by Pathway Commons from the following databases: Reactome, NCI Pathways, PhosphoSite, HumanCyc, HPRD, PANTHER, DIP, BioGRID, IntAct, BIND, Transfac, MiRTarBase, Drugbank, Recon X, Comparative Toxicogenomics Database, and KEGG

Sanger Dependency Map Cancer Cell Line Proteomics Dataset

From Sanger Cancer Dependency Map

Protein intensity values acquired using data-independent acquisition mass spectrometry (DIA-MS).

PFOCR Pathway Figure Associations 2023 Dataset (Archived)

From Pathway Figure Optical Character Recognition

Sets of genes/proteins extracted from pathway figures in research publications using optical character recognition

PFOCR Pathway Figure Associations 2024 Dataset

From Pathway Figure Optical Character Recognition

Sets of genes/proteins extracted from pathway figures in research publications using optical character recognition, updated for 2024

PID Pathways Dataset

From Pathway Interaction Database

Sets of proteins participating in pathways from PID

CCLE Cell Line Gene CNV Profiles Dataset

From Cancer Cell Line Encyclopedia

Gene-level copy number variation profiles for cancer cell lines

CCLE Cell Line Gene Expression Profiles Dataset

From Cancer Cell Line Encyclopedia

mRNA microarray expression profiles for cancer cell lines

CCLE Cell Line Gene Mutation Profiles Dataset

From Cancer Cell Line Encyclopedia

Gene-level mutation profiles for cancer cell lines

CCLE Cell Line Proteomics Dataset

From Cancer Cell Line Encyclopedia

Protein intensity values acquired using mass spectrometry across human cancerous cell lines

COSMIC Cell Line Gene CNV Profiles Dataset

From Catalogue of Somatic Mutations In Cancer

Gene-level copy number variation profiles for cancer cell lines

COSMIC Cell Line Gene Mutation Profiles Dataset

From Catalogue of Somatic Mutations In Cancer

Gene mutations in cancer cell lines from low-throughput or high-throughput studies

GDSC Cell Line Gene Expression Profiles Dataset

From Genomics of Drug Sensitivity in Cancer

mRNA microarray expression profiles for cancer cell lines

TCGA Signatures of Differentially Expressed Genes for Tumors Dataset

From The Cancer Genome Atlas

mRNA expression profiles for tumor and normal tissue samples

DepMap CRISPR Gene Dependency Dataset

From Cancer Dependency Map

Dependency scores for cell lines following single gene knockdowns