Name

Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles Dataset

From Roadmap Epigenomics

DNA methylation profiles for primary cell types and tissues

Pathway Commons Protein-Protein Interactions Dataset

From Pathway Commons

Protein-protein interactions from low-throughput or high-throughput studies aggregated by Pathway Commons from the following databases: Reactome, NCI Pathways, PhosphoSite, HumanCyc, HPRD, PANTHER, DIP, BioGRID, IntAct, BIND, Transfac, MiRTarBase, Drugbank, Recon X, Comparative Toxicogenomics Database, and KEGG

PFOCR Pathway Figure Associations 2023 Dataset (Archived)

From Pathway Figure Optical Character Recognition

Sets of genes/proteins extracted from pathway figures in research publications using optical character recognition

PFOCR Pathway Figure Associations 2024 Dataset

From Pathway Figure Optical Character Recognition

Sets of genes/proteins extracted from pathway figures in research publications using optical character recognition, updated for 2024

ENCODE Histone Modification Site Profiles Dataset

From Encyclopedia of DNA Elements

Histone site modification profiles for cell lines from ENCODE

ENCODE Transcription Factor Binding Site Profiles Dataset

From Encyclopedia of DNA Elements

Transcription factor binding site profiles for cell lines

ENCODE Transcription Factor Targets Dataset

From Encyclopedia of DNA Elements

Target genes of transcription factors from transcription factor binding site profiles

PID Pathways Dataset

From Pathway Interaction Database

Sets of proteins participating in pathways from PID