Harmonizome 3.0

From DrugBank

Sets of proteins targeted by drugs by manual literature curation

From DeepCoverMOA

Protein expression profiles in HCT116 cell line following drug treatment

From RummaGEO

Drug perturbation signatures produced from automatically mined RNA-seq samples from GEO.

From Novartis Institutes for Biomedical Research

Drug perturbation signatures created by profiling 4343 small molecules in the U2-OS cell line with the DRUG-seq platform

From Sci-Plex

sciRNA-seq expression profiles for A549, K562, and MCF7 cells treated with 188 compounds at 4 doses

From Drug-Gene Interaction Database

Sets of proteins targeted by drugs by data aggregation

From BioGPS

mRNA expression profiles for human tissues and cell types

From BioGPS

mRNA expression profiles for mouse tissues and cell types

From ESCAPE

Sets of target genes of transcription factors from published ChIP-chip, ChIP-seq, and other transcription factor binding site profiling studies;sets of differentially expressed genes following perturbation of a protein from gene expression data in GEO; sets of interacting proteins from high- and low-throughput protein-protein interaction studies; sets of targets of microRNAs from public databases, computationally predicted or experimentally verified

From Human Proteome Map

Protein expression profiles for tissues and cell types

From Proteomics Database

Protein expression profiles for tissues and cell types reprocessed from many proteomics datasets

From Roadmap Epigenomics

DNA methylation profiles for primary cell types and tissues

From Roadmap Epigenomics

mRNA expression profiles for primary cell types and tissues

From Allen Brain Atlas

mRNA expression profiles for dementia and traumatic brain injuries (TBI) from aging brain tissue

From Database of Genotypes and Phenotypes

Gene-trait associations curated from genetic association studies

From Genomics of Drug Sensitivity in Cancer

mRNA microarray expression profiles for cancer cell lines

From Kyoto Encyclopedia of Genes and Genomes

Sets of proteins participating in pathways from KEGG

From Kyoto Encyclopedia of Genes and Genomes

Sets of proteins participating in pathways from KEGG