| Name |
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Tabula Sapiens Gene-Cell Associations DatasetFrom Tabula Sapiens Gene expression data from Tabula Sapiens scRNA-seq counts |
MSigDB Cancer Gene Co-expression Modules DatasetFrom Molecular Signatures Database Computational signatures of genes co-expressed with cancer related genes |
MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations DatasetFrom Molecular Signatures Database Oncogenic signatures of genes differentially expressed following cancer gene perturbations |
Pathway Commons Protein-Protein Interactions DatasetFrom Pathway Commons Protein-protein interactions from low-throughput or high-throughput studies aggregated by Pathway Commons from the following databases: Reactome, NCI Pathways, PhosphoSite, HumanCyc, HPRD, PANTHER, DIP, BioGRID, IntAct, BIND, Transfac, MiRTarBase, Drugbank, Recon X, Comparative Toxicogenomics Database, and KEGG |
Sanger Dependency Map Cancer Cell Line Proteomics DatasetFrom Sanger Cancer Dependency Map Protein intensity values acquired using data-independent acquisition mass spectrometry (DIA-MS). |
PFOCR Pathway Figure Associations 2023 Dataset (Archived)From Pathway Figure Optical Character Recognition Sets of genes/proteins extracted from pathway figures in research publications using optical character recognition |
PFOCR Pathway Figure Associations 2024 DatasetFrom Pathway Figure Optical Character Recognition Sets of genes/proteins extracted from pathway figures in research publications using optical character recognition, updated for 2024 |
PID Pathways DatasetFrom Pathway Interaction Database Sets of proteins participating in pathways from PID |
CCLE Cell Line Gene CNV Profiles DatasetFrom Cancer Cell Line Encyclopedia Gene-level copy number variation profiles for cancer cell lines |
CCLE Cell Line Gene Expression Profiles DatasetFrom Cancer Cell Line Encyclopedia mRNA microarray expression profiles for cancer cell lines |
CCLE Cell Line Gene Mutation Profiles DatasetFrom Cancer Cell Line Encyclopedia Gene-level mutation profiles for cancer cell lines |
CCLE Cell Line Proteomics DatasetFrom Cancer Cell Line Encyclopedia Protein intensity values acquired using mass spectrometry across human cancerous cell lines |
COSMIC Cell Line Gene CNV Profiles DatasetFrom Catalogue of Somatic Mutations In Cancer Gene-level copy number variation profiles for cancer cell lines |
COSMIC Cell Line Gene Mutation Profiles DatasetFrom Catalogue of Somatic Mutations In Cancer Gene mutations in cancer cell lines from low-throughput or high-throughput studies |
GDSC Cell Line Gene Expression Profiles DatasetFrom Genomics of Drug Sensitivity in Cancer mRNA microarray expression profiles for cancer cell lines |
TCGA Signatures of Differentially Expressed Genes for Tumors DatasetmRNA expression profiles for tumor and normal tissue samples |
DepMap CRISPR Gene Dependency DatasetDependency scores for cell lines following single gene knockdowns |