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KEA Substrates of Kinases DatasetFrom Kinase Enrichment Analysis Protein substrates of kinases from published low-throughput and high-throughput phosphoproteomics studies |
PhosphoSitePlus Substrates of Kinases DatasetFrom PhosphoSitePlus Kinase-substrate interactions curated from low-throughput or high-throughput phosphoproteomics studies |
Sanger Dependency Map Cancer Cell Line Proteomics DatasetFrom Sanger Cancer Dependency Map Protein intensity values acquired using data-independent acquisition mass spectrometry (DIA-MS). |
CM4AI U2OS Cell Map Protein Localization Assemblies DatasetFrom Cell Maps for AI Protein localization assemblies constructed from integrating AP-MS biomolecular interaction and IF imaging data |
BioGPS Human Cell Type and Tissue Gene Expression Profiles DatasetFrom BioGPS mRNA expression profiles for human tissues and cell types |
BioGPS Mouse Cell Type and Tissue Gene Expression Profiles DatasetFrom BioGPS mRNA expression profiles for mouse tissues and cell types |
ESCAPE Omics Signatures of Genes and Proteins for Stem Cells DatasetFrom ESCAPE Sets of target genes of transcription factors from published ChIP-chip, ChIP-seq, and other transcription factor binding site profiling studies;sets of differentially expressed genes following perturbation of a protein from gene expression data in GEO; sets of interacting proteins from high- and low-throughput protein-protein interaction studies; sets of targets of microRNAs from public databases, computationally predicted or experimentally verified |
HPM Cell Type and Tissue Protein Expression Profiles DatasetFrom Human Proteome Map Protein expression profiles for tissues and cell types |
ProteomicsDB Cell Type and Tissue Protein Expression Profiles DatasetFrom Proteomics Database Protein expression profiles for tissues and cell types reprocessed from many proteomics datasets |
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles DatasetFrom Roadmap Epigenomics DNA methylation profiles for primary cell types and tissues |
Roadmap Epigenomics Cell and Tissue Gene Expression Profiles DatasetFrom Roadmap Epigenomics mRNA expression profiles for primary cell types and tissues |
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles DatasetFrom Allen Brain Atlas mRNA expression profiles for dementia and traumatic brain injuries (TBI) from aging brain tissue |
dbGAP Gene-Trait Associations DatasetFrom Database of Genotypes and Phenotypes Gene-trait associations curated from genetic association studies |
KEGG Pathways Dataset (Archived)From Kyoto Encyclopedia of Genes and Genomes Sets of proteins participating in pathways from KEGG |
KEGG Pathways 2026 DatasetFrom Kyoto Encyclopedia of Genes and Genomes Sets of proteins participating in pathways from KEGG |
CMAP Signatures of Differentially Expressed Genes for Small Molecules DatasetFrom Connectivity Map mRNA expression profiles for cell lines following chemical perturbation |
LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules Dataset (Archived)From LINCS L1000 Connectivity Map mRNA expression profiles for cell lines following small molecule perturbation |
LINCS L1000 CMAP CRISPR Knockout Consensus Signatures DatasetFrom LINCS L1000 Connectivity Map Gene association consensus signatures following CRISPR gene knockout |
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures DatasetFrom LINCS L1000 Connectivity Map Gene association consensus signatures following small molecule perturbation |
DepMap CRISPR Gene Dependency DatasetDependency scores for cell lines following single gene knockdowns |