Name

KEA Substrates of Kinases Dataset

From Kinase Enrichment Analysis

Protein substrates of kinases from published low-throughput and high-throughput phosphoproteomics studies

PhosphoSitePlus Substrates of Kinases Dataset

From PhosphoSitePlus

Kinase-substrate interactions curated from low-throughput or high-throughput phosphoproteomics studies

Sanger Dependency Map Cancer Cell Line Proteomics Dataset

From Sanger Cancer Dependency Map

Protein intensity values acquired using data-independent acquisition mass spectrometry (DIA-MS).

CM4AI U2OS Cell Map Protein Localization Assemblies Dataset

From Cell Maps for AI

Protein localization assemblies constructed from integrating AP-MS biomolecular interaction and IF imaging data

BioGPS Human Cell Type and Tissue Gene Expression Profiles Dataset

From BioGPS

mRNA expression profiles for human tissues and cell types

BioGPS Mouse Cell Type and Tissue Gene Expression Profiles Dataset

From BioGPS

mRNA expression profiles for mouse tissues and cell types

ESCAPE Omics Signatures of Genes and Proteins for Stem Cells Dataset

From ESCAPE

Sets of target genes of transcription factors from published ChIP-chip, ChIP-seq, and other transcription factor binding site profiling studies;sets of differentially expressed genes following perturbation of a protein from gene expression data in GEO; sets of interacting proteins from high- and low-throughput protein-protein interaction studies; sets of targets of microRNAs from public databases, computationally predicted or experimentally verified

HPM Cell Type and Tissue Protein Expression Profiles Dataset

From Human Proteome Map

Protein expression profiles for tissues and cell types

ProteomicsDB Cell Type and Tissue Protein Expression Profiles Dataset

From Proteomics Database

Protein expression profiles for tissues and cell types reprocessed from many proteomics datasets

Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles Dataset

From Roadmap Epigenomics

DNA methylation profiles for primary cell types and tissues

Roadmap Epigenomics Cell and Tissue Gene Expression Profiles Dataset

From Roadmap Epigenomics

mRNA expression profiles for primary cell types and tissues

Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles Dataset

From Allen Brain Atlas

mRNA expression profiles for dementia and traumatic brain injuries (TBI) from aging brain tissue

dbGAP Gene-Trait Associations Dataset

From Database of Genotypes and Phenotypes

Gene-trait associations curated from genetic association studies

KEGG Pathways Dataset (Archived)

From Kyoto Encyclopedia of Genes and Genomes

Sets of proteins participating in pathways from KEGG

KEGG Pathways 2026 Dataset

From Kyoto Encyclopedia of Genes and Genomes

Sets of proteins participating in pathways from KEGG

CMAP Signatures of Differentially Expressed Genes for Small Molecules Dataset

From Connectivity Map

mRNA expression profiles for cell lines following chemical perturbation

LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules Dataset (Archived)

From LINCS L1000 Connectivity Map

mRNA expression profiles for cell lines following small molecule perturbation

LINCS L1000 CMAP CRISPR Knockout Consensus Signatures Dataset

From LINCS L1000 Connectivity Map

Gene association consensus signatures following CRISPR gene knockout

LINCS L1000 CMAP Chemical Perturbation Consensus Signatures Dataset

From LINCS L1000 Connectivity Map

Gene association consensus signatures following small molecule perturbation

DepMap CRISPR Gene Dependency Dataset

From Cancer Dependency Map

Dependency scores for cell lines following single gene knockdowns