Name

Tabula Sapiens Gene-Cell Associations Dataset

From Tabula Sapiens

Gene expression data from Tabula Sapiens scRNA-seq counts

Pathway Commons Protein-Protein Interactions Dataset

From Pathway Commons

Protein-protein interactions from low-throughput or high-throughput studies aggregated by Pathway Commons from the following databases: Reactome, NCI Pathways, PhosphoSite, HumanCyc, HPRD, PANTHER, DIP, BioGRID, IntAct, BIND, Transfac, MiRTarBase, Drugbank, Recon X, Comparative Toxicogenomics Database, and KEGG

PFOCR Pathway Figure Associations 2023 Dataset (Archived)

From Pathway Figure Optical Character Recognition

Sets of genes/proteins extracted from pathway figures in research publications using optical character recognition

PFOCR Pathway Figure Associations 2024 Dataset

From Pathway Figure Optical Character Recognition

Sets of genes/proteins extracted from pathway figures in research publications using optical character recognition, updated for 2024

DrugBank Drug Targets Dataset

From DrugBank

Sets of proteins targeted by drugs by manual literature curation

DeepCoverMOA Drug Mechanisms of Action Dataset

From DeepCoverMOA

Protein expression profiles in HCT116 cell line following drug treatment

RummaGEO Drug Perturbation Signatures Dataset

From RummaGEO

Drug perturbation signatures produced from automatically mined RNA-seq samples from GEO.

NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles Dataset

From Novartis Institutes for Biomedical Research

Drug perturbation signatures created by profiling 4343 small molecules in the U2-OS cell line with the DRUG-seq platform

Sci-Plex Drug Perturbation Signatures Dataset

From Sci-Plex

sciRNA-seq expression profiles for A549, K562, and MCF7 cells treated with 188 compounds at 4 doses

DGIdb Drug Targets 2026 Dataset

From Drug-Gene Interaction Database

Sets of proteins targeted by drugs by data aggregation

GDSC Cell Line Gene Expression Profiles Dataset

From Genomics of Drug Sensitivity in Cancer

mRNA microarray expression profiles for cancer cell lines

PID Pathways Dataset

From Pathway Interaction Database

Sets of proteins participating in pathways from PID