Harmonizome 3.0

From ClinVar

SNP-phenotype associations curated by ClinVar users from various sources

From Comparative Toxicogenomics Database

Disease-gene interactions from manually curated literature

From Database of Genotypes and Phenotypes

Gene-trait associations curated from genetic association studies

From Genetic Association Database

Gene-disease associations curated from genetic association studies

From Genetic Association Database

Gene-disease associations curated from genetic association studies

From GWAS Catalog

SNP-phenotype association p-values curated from published GWAS

From GWASdb

SNP-disease association p-values curated from published GWAS

From GWASdb

SNP-phenotype association p-values curated from published GWAS

From Human Phenotype Ontology

Phenotype-causing gene mutations of human phenotypes from disease knowledgebases

From HuGE Navigator

Gene-phenotype associations extracted from published GWAS by automated text-mining

From Mammalian Phenotype Ontology

Observed phenotypes of transgenic mice collected from mouse phenotyping studies

From Online Mendelian Inheritance in Man

Disease- or phenotype-causing gene mutations for heritable human diseases or phenotypes curated from biomedical publications

From PhosphoSitePlus

Disease-phosphosite associations curated from literature

From Tabula Sapiens

Gene expression data from Tabula Sapiens scRNA-seq counts

From DisGeNET

Gene-disease associations sourced from curated repositories, GWAS catalogues, animal models and the scientific literature

From DisGeNET

Gene-phenotype associations sourced from curated repositories, GWAS catalogues, animal models and the scientific literature

From Pathway Figure Optical Character Recognition

Sets of genes/proteins extracted from pathway figures in research publications using optical character recognition

From Mammalian Phenotype Ontology

Observed phenotypes of transgenic mice collected from mouse phenotyping studies

From Metabolomics Workbench

Biomolecular interactions between metabolites and proteins curated from experimental studies

From CellMarker

Cell type markers across various tissues from human and mouse scRNA-seq

From Pathway Figure Optical Character Recognition

Sets of genes/proteins extracted from pathway figures in research publications using optical character recognition, updated for 2024

From ClinVar

SNP-phenotype associations curated by ClinVar users from various sources

From GWAS Catalog

SNP-phenotype association p-values curated from published GWAS

From Rummagene

Sets of genes regulated by transcription factors by mining supplemental materials

From GeneRIF Biological Term Annotations

genes co-occuring with the biological term associations in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

From GAD Gene-Disease Associations

genes associated with the disease frontal-limbic white matter pathway associations in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.