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ESCAPE Omics Signatures of Genes and Proteins for Stem Cells DatasetFrom ESCAPE Sets of target genes of transcription factors from published ChIP-chip, ChIP-seq, and other transcription factor binding site profiling studies;sets of differentially expressed genes following perturbation of a protein from gene expression data in GEO; sets of interacting proteins from high- and low-throughput protein-protein interaction studies; sets of targets of microRNAs from public databases, computationally predicted or experimentally verified |
BioGPS Human Cell Type and Tissue Gene Expression Profiles DatasetFrom BioGPS mRNA expression profiles for human tissues and cell types |
BioGPS Mouse Cell Type and Tissue Gene Expression Profiles DatasetFrom BioGPS mRNA expression profiles for mouse tissues and cell types |
HPM Cell Type and Tissue Protein Expression Profiles DatasetFrom Human Proteome Map Protein expression profiles for tissues and cell types |
ProteomicsDB Cell Type and Tissue Protein Expression Profiles DatasetFrom Proteomics Database Protein expression profiles for tissues and cell types reprocessed from many proteomics datasets |
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles DatasetFrom Roadmap Epigenomics DNA methylation profiles for primary cell types and tissues |
Roadmap Epigenomics Cell and Tissue Gene Expression Profiles DatasetFrom Roadmap Epigenomics mRNA expression profiles for primary cell types and tissues |
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles DatasetFrom Allen Brain Atlas mRNA expression profiles for dementia and traumatic brain injuries (TBI) from aging brain tissue |
CMAP Signatures of Differentially Expressed Genes for Small Molecules DatasetFrom Connectivity Map mRNA expression profiles for cell lines following chemical perturbation |
GEO Signatures of Differentially Expressed Genes for Diseases DatasetmRNA expression profiles for cell lines or tissues following disease perturbation |
GEO Signatures of Differentially Expressed Genes for Gene Perturbations DatasetmRNA expression profiles for cell lines or tissues following genetic perturbation (knockdown, knockout, over-expression, mutation) |
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations DatasetmRNA expression profiles for cell lines or tissues following kinase perturbation (inhibition, activation, knockdown, knockout, over-expression, mutation) |
GEO Signatures of Differentially Expressed Genes for Small Molecules DatasetmRNA expression profiles for cell lines or tissues following small molecule perturbation |
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations DatasetmRNA expression profiles for cell lines or tissues following transcription factor perturbation (inhibition, activation, knockdown, knockout, over-expression, mutation) |
GEO Signatures of Differentially Expressed Genes for Viral Infections DatasetmRNA expression profiles for cell lines or tissues following viral infection |
LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules Dataset (Archived)From LINCS L1000 Connectivity Map mRNA expression profiles for cell lines following small molecule perturbation |
MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations DatasetFrom Molecular Signatures Database Oncogenic signatures of genes differentially expressed following cancer gene perturbations |
TCGA Signatures of Differentially Expressed Genes for Tumors DatasetmRNA expression profiles for tumor and normal tissue samples |
PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations DatasetFrom PerturbAtlas Gene expression profiles for cell lines, cell types, tissues, and models following genetic perturbation (knockdown, knockout, knockin, over-expression, mutation, and multi-condition) |
PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations DatasetFrom PerturbAtlas Gene expression profiles for cell lines, cell types, tissues, and models following genetic perturbation (knockdown, knockout, knockin, over-expression, mutation, and multi-condition) |
KEGG Pathways Dataset (Archived)From Kyoto Encyclopedia of Genes and Genomes Sets of proteins participating in pathways from KEGG |
KEGG Pathways 2026 DatasetFrom Kyoto Encyclopedia of Genes and Genomes Sets of proteins participating in pathways from KEGG |
dbGAP Gene-Trait Associations DatasetFrom Database of Genotypes and Phenotypes Gene-trait associations curated from genetic association studies |