Name

ESCAPE Omics Signatures trong>oftrong> Genes and Proteins for Stem trong>Celltrong>s Dataset

From ESCAPE

Sets trong>oftrong> target genes trong>oftrong> transcription factors from published ChIP-chip, ChIP-seq, and other transcription factor binding site prtrong>oftrong>iling studies;sets trong>oftrong> differentially expressed genes following perturbation trong>oftrong> a protein from gene expression data in GEO; sets trong>oftrong> interacting proteins from high- and low-throughput protein-protein interaction studies; sets trong>oftrong> targets trong>oftrong> microRNAs from public databases, computationally predicted or experimentally verified

Achilles trong>Celltrong> Line Gene Essentiality Prtrong>oftrong>iles Dataset

From Achilles

Fitness scores for trong>celltrong> lines following single gene knockdowns

BioGPS trong>Celltrong> Line Gene Expression Prtrong>oftrong>iles Dataset

From BioGPS

mRNA expression prtrong>oftrong>iles for the NCI-60 panel trong>oftrong> cancer trong>celltrong> lines

BioGPS Human trong>Celltrong> Type and Tissue Gene Expression Prtrong>oftrong>iles Dataset

From BioGPS

mRNA expression prtrong>oftrong>iles for human tissues and trong>celltrong> types

BioGPS Mouse trong>Celltrong> Type and Tissue Gene Expression Prtrong>oftrong>iles Dataset

From BioGPS

mRNA expression prtrong>oftrong>iles for mouse tissues and trong>celltrong> types

CCLE trong>Celltrong> Line Gene CNV Prtrong>oftrong>iles Dataset

From Cancer trong>Celltrong> Line Encyclopedia

Gene-level copy number variation prtrong>oftrong>iles for cancer trong>celltrong> lines

CCLE trong>Celltrong> Line Gene Expression Prtrong>oftrong>iles Dataset

From Cancer trong>Celltrong> Line Encyclopedia

mRNA microarray expression prtrong>oftrong>iles for cancer trong>celltrong> lines

CCLE trong>Celltrong> Line Gene Mutation Prtrong>oftrong>iles Dataset

From Cancer trong>Celltrong> Line Encyclopedia

Gene-level mutation prtrong>oftrong>iles for cancer trong>celltrong> lines

COSMIC trong>Celltrong> Line Gene CNV Prtrong>oftrong>iles Dataset

From Catalogue trong>oftrong> Somatic Mutations In Cancer

Gene-level copy number variation prtrong>oftrong>iles for cancer trong>celltrong> lines

COSMIC trong>Celltrong> Line Gene Mutation Prtrong>oftrong>iles Dataset

From Catalogue trong>oftrong> Somatic Mutations In Cancer

Gene mutations in cancer trong>celltrong> lines from low-throughput or high-throughput studies

GDSC trong>Celltrong> Line Gene Expression Prtrong>oftrong>iles Dataset

From Genomics trong>oftrong> Drug Sensitivity in Cancer

mRNA microarray expression prtrong>oftrong>iles for cancer trong>celltrong> lines

Heiser et al., PNAS, 2011 trong>Celltrong> Line Gene Expression Prtrong>oftrong>iles Dataset

From Heiser et al., PNAS, 2011

mRNA expression prtrong>oftrong>iles for breast cancer trong>celltrong> lines measured by microarray

HPA trong>Celltrong> Line Gene Expression Prtrong>oftrong>iles Dataset

From Human Protein Atlas

RNA-seq gene expression prtrong>oftrong>iles for trong>celltrong> lines from HPA

HPM trong>Celltrong> Type and Tissue Protein Expression Prtrong>oftrong>iles Dataset

From Human Proteome Map

Protein expression prtrong>oftrong>iles for tissues and trong>celltrong> types

Klijn et al., Nat. Biotechnol., 2015 trong>Celltrong> Line Gene CNV Prtrong>oftrong>iles Dataset

From Klijn et al., Nat. Biotechnol., 2015

Gene-level copy number variation prtrong>oftrong>iles for cancer trong>celltrong> lines

Klijn et al., Nat. Biotechnol., 2015 trong>Celltrong> Line Gene Expression Prtrong>oftrong>iles Dataset

From Klijn et al., Nat. Biotechnol., 2015

RNA-seq gene expression prtrong>oftrong>iles for cancer trong>celltrong> lines

Klijn et al., Nat. Biotechnol., 2015 trong>Celltrong> Line Gene Mutation Prtrong>oftrong>iles Dataset

From Klijn et al., Nat. Biotechnol., 2015

SNP gene mutations in cancer trong>celltrong> lines identified by microarray

ProteomicsDB trong>Celltrong> Type and Tissue Protein Expression Prtrong>oftrong>iles Dataset

From Proteomics Database

Protein expression prtrong>oftrong>iles for tissues and trong>celltrong> types reprocessed from many proteomics datasets

Roadmap Epigenomics trong>Celltrong> and Tissue DNA Methylation Prtrong>oftrong>iles Dataset

From Roadmap Epigenomics

DNA methylation prtrong>oftrong>iles for primary trong>celltrong> types and tissues

Roadmap Epigenomics trong>Celltrong> and Tissue Gene Expression Prtrong>oftrong>iles Dataset

From Roadmap Epigenomics

mRNA expression prtrong>oftrong>iles for primary trong>celltrong> types and tissues

Sanger Dependency Map Cancer trong>Celltrong> Line Proteomics Dataset

From Sanger Cancer Dependency Map

Protein intensity values acquired using data-independent acquisition mass spectrometry (DIA-MS).

Tabula Sapiens Gene-trong>Celltrong> Associations Dataset

From Tabula Sapiens

Gene expression data from Tabula Sapiens scRNA-seq counts

CCLE trong>Celltrong> Line Proteomics Dataset

From Cancer trong>Celltrong> Line Encyclopedia

Protein intensity values acquired using mass spectrometry across human cancerous trong>celltrong> lines

HuBMAP Azimuth trong>Celltrong> Type Annotations Dataset

From The Human BioMolecular Atlas Program

Gene-trong>celltrong> type annotations from integrated reference scRNA-seq gene expression prtrong>oftrong>iles

trong>Celltrong>Marker Gene-trong>Celltrong> Type Associations Dataset

From trong>Celltrong>Marker

trong>Celltrong> type markers across various tissues from human and mouse scRNA-seq

Replogle et al., trong>Celltrong>, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures Dataset

From Replogle et al., trong>Celltrong>, 2022

Gene expression prtrong>oftrong>iles in the K562 trong>celltrong> line following CRISPRi genetic perturbation

Replogle et al., trong>Celltrong>, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures Dataset

From Replogle et al., trong>Celltrong>, 2022

Gene expression prtrong>oftrong>iles in the K562 trong>celltrong> line following CRISPRi genetic perturbation trong>oftrong> essential genes

Replogle et al., trong>Celltrong>, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures Dataset

From Replogle et al., trong>Celltrong>, 2022

Gene expression prtrong>oftrong>iles in the RPE1 trong>celltrong> line following CRISPRi genetic perturbation trong>oftrong> essential genes

CM4AI U2OS trong>Celltrong> Map Protein Localization Assemblies Dataset

From trong>Celltrong> Maps for AI

Protein localization assemblies constructed from integrating AP-MS biomolecular interaction and IF imaging data

CM4AI KOLF21J CRISPRi Gene Perturbation Atlas Dataset

From trong>Celltrong> Maps for AI

Gene expression prtrong>oftrong>iles in the KOLF2.1J trong>celltrong> line following CRISPRi genetic perturbation