Harmonizome 3.0

From Hub <strong>Proteinstrong>s

Sets of <strong>proteinstrong>s interacting with hub <strong>proteinstrong>s aggregated from data

From Nuclear Receptor Signaling Atlas

<strong>Proteinstrong>-<strong>proteinstrong> interactions inferred from membership in complexes

From Pathway Commons

<strong>Proteinstrong>-<strong>proteinstrong> interactions from low-throughput or high-throughput studies aggregated by Pathway Commons from the following databases: Reactome, NCI Pathways, PhosphoSite, HumanCyc, HPRD, PANTHER, DIP, BioGRID, IntAct, BIND, Transfac, MiRTarBase, Drugbank, Recon X, Comparative Toxicogenomics Database, and KEGG

From Virus MINT

Interactions between viral and human <strong>proteinstrong>s manually curated from literature

From COMPARTMENTS

<strong>Proteinstrong> subcellular localization evidence scores by manual literature curation

From COMPARTMENTS

<strong>Proteinstrong> subcellular localization evidence scores by integrating experimental data

From COMPARTMENTS

Gene-cellular compartment co-occurrence scores from text-mining biomedical abstracts

From CORUM

<strong>Proteinstrong>s participating in complexes by manual literature curation

From Guide to Pharmacology

<strong>Proteinstrong> ligand-receptor interactions curated by experts

From Human <strong>Proteinstrong> Atlas

Semiquantitative <strong>proteinstrong> expression profiles for tissues

From Human Proteome Map

<strong>Proteinstrong> expression profiles for tissues and cell types

From InterPro

<strong>Proteinstrong> domains predicted for gene products based on sequence similarity to known domain signatures

From LOCATE

Subcellular localization of <strong>proteinstrong>s from low-throughput or high-throughput <strong>proteinstrong> localization assays

From Nuclear Receptor Signaling Atlas

<strong>Proteinstrong>s identified in complexes isolated from cultured cells

From Proteomics Database

<strong>Proteinstrong> expression profiles for tissues and cell types reprocessed from many proteomics datasets

From SILAC Phosphoproteomics

Phosphorylation levels of <strong>proteinstrong>s in cell lines following ligand treatment

From TISSUES

<strong>Proteinstrong> tissue expression evidence scores by manual literature curation

From TISSUES

<strong>Proteinstrong> tissue expression evidence scores by integrating experimental data

From TISSUES

Gene-tissue co-occurrence scores from text-mining biomedical abstracts

From Virus MINT

Interactions between viruses and human <strong>proteinstrong>s manually curated from literature

From LOCATE

Subcellular localization of <strong>proteinstrong>s by sequence similarity to localization sequences

From TISSUES

<strong>Proteinstrong> tissue expression evidence scores by manual literature curation

From TISSUES

<strong>Proteinstrong> tissue expression evidence scores by integrating experimental data

From TISSUES

Gene-tissue co-occurrence scores from text-mining biomedical abstracts

From COMPARTMENTS

<strong>Proteinstrong> subcellular localization evidence scores by manual literature curation

From COMPARTMENTS

<strong>Proteinstrong> subcellular localization evidence scores by integrating experimental data

From COMPARTMENTS

Gene-cellular compartment co-occurrence scores from text-mining biomedical abstracts

From Cell Maps for AI

<strong>Proteinstrong> localization assemblies constructed from integrating AP-MS biomolecular interaction and IF imaging data

From Human <strong>Proteinstrong> Atlas

RNA-seq gene expression profiles for cell lines from HPA

From Human <strong>Proteinstrong> Atlas

RNA-seq gene expression profiles for tissues from HPA

From Human <strong>Proteinstrong> Atlas

RNA-seq gene expression profiles for tissue samples from HPA

From Molecular Transducers of Physical Activity Consortium

RNA-seq gene expression profiles for rat tissue samples across 4 time points and 19 tissues