Name

DISEASES Curated Gene-Disease Association Evidence Scores Dataset (Archived)

From DISEASES

Disease gene evidence scores by manual literature curation

DISEASES Experimental Gene-Disease Association Evidence Scores Dataset (Archived)

From DISEASES

Disease gene evidence scores by integrating experimental data (GWAS)

DISEASES Text-mining Gene-Disease Association Evidence Scores Dataset (Archived)

From DISEASES

Gene-disease co-occurrence scores from text-mining biomedical abstracts

GEO Signatures of Differentially Expressed Genes for Diseases Dataset

From Gene Expression Omnibus

mRNA expression profiles for cell lines or tissues following disease perturbation

DISEASES Curated Gene-Disease Association Evidence Scores 2025 Dataset

From DISEASES

Disease gene evidence scores by manual literature curation

DISEASES Experimental Gene-Disease Association Evidence Scores 2025 Dataset

From DISEASES

Disease gene evidence scores by integrating experimental data (GWAS)

DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 Dataset

From DISEASES

Gene-disease co-occurrence scores from text-mining biomedical abstracts

Achilles Cell Line Gene Essentiality Profiles Dataset

From Achilles

Fitness scores for cell lines following single gene knockdowns

BioGPS Cell Line Gene Expression Profiles Dataset

From BioGPS

mRNA expression profiles for the NCI-60 panel of cancer cell lines

BioGPS Human Cell Type and Tissue Gene Expression Profiles Dataset

From BioGPS

mRNA expression profiles for human tissues and cell types

BioGPS Mouse Cell Type and Tissue Gene Expression Profiles Dataset

From BioGPS

mRNA expression profiles for mouse tissues and cell types

CCLE Cell Line Gene CNV Profiles Dataset

From Cancer Cell Line Encyclopedia

Gene-level copy number variation profiles for cancer cell lines

CCLE Cell Line Gene Expression Profiles Dataset

From Cancer Cell Line Encyclopedia

mRNA microarray expression profiles for cancer cell lines

CCLE Cell Line Gene Mutation Profiles Dataset

From Cancer Cell Line Encyclopedia

Gene-level mutation profiles for cancer cell lines

COSMIC Cell Line Gene CNV Profiles Dataset

From Catalogue of Somatic Mutations In Cancer

Gene-level copy number variation profiles for cancer cell lines

COSMIC Cell Line Gene Mutation Profiles Dataset

From Catalogue of Somatic Mutations In Cancer

Gene mutations in cancer cell lines from low-throughput or high-throughput studies

GDSC Cell Line Gene Expression Profiles Dataset

From Genomics of Drug Sensitivity in Cancer

mRNA microarray expression profiles for cancer cell lines

Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles Dataset

From Heiser et al., PNAS, 2011

mRNA expression profiles for breast cancer cell lines measured by microarray

HPA Cell Line Gene Expression Profiles Dataset

From Human Protein Atlas

RNA-seq gene expression profiles for cell lines from HPA

HPM Cell Type and Tissue Protein Expression Profiles Dataset

From Human Proteome Map

Protein expression profiles for tissues and cell types

Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles Dataset

From Klijn et al., Nat. Biotechnol., 2015

Gene-level copy number variation profiles for cancer cell lines

Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles Dataset

From Klijn et al., Nat. Biotechnol., 2015

RNA-seq gene expression profiles for cancer cell lines

Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles Dataset

From Klijn et al., Nat. Biotechnol., 2015

SNP gene mutations in cancer cell lines identified by microarray

ProteomicsDB Cell Type and Tissue Protein Expression Profiles Dataset

From Proteomics Database

Protein expression profiles for tissues and cell types reprocessed from many proteomics datasets

Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles Dataset

From Roadmap Epigenomics

DNA methylation profiles for primary cell types and tissues

Roadmap Epigenomics Cell and Tissue Gene Expression Profiles Dataset

From Roadmap Epigenomics

mRNA expression profiles for primary cell types and tissues

Sanger Dependency Map Cancer Cell Line Proteomics Dataset

From Sanger Cancer Dependency Map

Protein intensity values acquired using data-independent acquisition mass spectrometry (DIA-MS).

Tabula Sapiens Gene-Cell Associations Dataset

From Tabula Sapiens

Gene expression data from Tabula Sapiens scRNA-seq counts

CCLE Cell Line Proteomics Dataset

From Cancer Cell Line Encyclopedia

Protein intensity values acquired using mass spectrometry across human cancerous cell lines

HuBMAP Azimuth Cell Type Annotations Dataset

From The Human BioMolecular Atlas Program

Gene-cell type annotations from integrated reference scRNA-seq gene expression profiles

CellMarker Gene-Cell Type Associations Dataset

From CellMarker

Cell type markers across various tissues from human and mouse scRNA-seq

Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures Dataset

From Replogle et al., Cell, 2022

Gene expression profiles in the K562 cell line following CRISPRi genetic perturbation

Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures Dataset

From Replogle et al., Cell, 2022

Gene expression profiles in the K562 cell line following CRISPRi genetic perturbation of essential genes

Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures Dataset

From Replogle et al., Cell, 2022

Gene expression profiles in the RPE1 cell line following CRISPRi genetic perturbation of essential genes

CM4AI U2OS Cell Map Protein Localization Assemblies Dataset

From Cell Maps for AI

Protein localization assemblies constructed from integrating AP-MS biomolecular interaction and IF imaging data

CM4AI KOLF21J CRISPRi Gene Perturbation Atlas Dataset

From Cell Maps for AI

Gene expression profiles in the KOLF2.1J cell line following CRISPRi genetic perturbation