Harmonizome 3.0

From Human Proteome Map

Protein expression profiles for tissues <strong>andstrong> cell types

From Proteomics Database

Protein expression profiles for tissues <strong>andstrong> cell types reprocessed from many proteomics datasets

From BioGPS

mRNA expression profiles for human tissues <strong>andstrong> cell types

From BioGPS

mRNA expression profiles for mouse tissues <strong>andstrong> cell types

From ESCAPE

Sets of target genes of transcription factors from published ChIP-chip, ChIP-seq, <strong>andstrong> other transcription factor binding site profiling studies;sets of differentially expressed genes following perturbation of a protein from gene expression data in GEO; sets of interacting proteins from high- <strong>andstrong> low-throughput protein-protein interaction studies; sets of targets of microRNAs from public databases, computationally predicted or experimentally verified

From Roadmap Epigenomics

DNA methylation profiles for primary cell types <strong>andstrong> tissues

From Roadmap Epigenomics

mRNA expression profiles for primary cell types <strong>andstrong> tissues

From Allen Brain Atlas

mRNA expression profiles for dementia <strong>andstrong> traumatic brain injuries (TBI) from aging brain tissue

From Hub Proteins

Sets of proteins interacting with hub proteins aggregated from data

From Nuclear Receptor Signaling Atlas

Protein-protein interactions inferred from membership in complexes

From Pathway Commons

Protein-protein interactions from low-throughput or high-throughput studies aggregated by Pathway Commons from the following databases: Reactome, NCI Pathways, PhosphoSite, HumanCyc, HPRD, PANTHER, DIP, BioGRID, IntAct, BIND, Transfac, MiRTarBase, Drugbank, Recon X, Comparative Toxicogenomics Database, <strong>andstrong> KEGG

From Virus MINT

Interactions between viral <strong>andstrong> human proteins manually curated from literature

From COMPARTMENTS

Protein subcellular localization evidence scores by manual literature curation

From COMPARTMENTS

Protein subcellular localization evidence scores by integrating experimental data

From COMPARTMENTS

Gene-cellular compartment co-occurrence scores from text-mining biomedical abstracts

From CORUM

Proteins participating in complexes by manual literature curation

From Guide to Pharmacology

Protein lig<strong>andstrong>-receptor interactions curated by experts

From Human Protein Atlas

Semiquantitative protein expression profiles for tissues

From InterPro

Protein domains predicted for gene products based on sequence similarity to known domain signatures

From LOCATE

Subcellular localization of proteins from low-throughput or high-throughput protein localization assays

From Nuclear Receptor Signaling Atlas

Proteins identified in complexes isolated from cultured cells

From SILAC Phosphoproteomics

Phosphorylation levels of proteins in cell lines following lig<strong>andstrong> treatment

From TISSUES

Protein tissue expression evidence scores by manual literature curation

From TISSUES

Protein tissue expression evidence scores by integrating experimental data

From TISSUES

Gene-tissue co-occurrence scores from text-mining biomedical abstracts

From Virus MINT

Interactions between viruses <strong>andstrong> human proteins manually curated from literature

From LOCATE

Subcellular localization of proteins by sequence similarity to localization sequences

From TISSUES

Protein tissue expression evidence scores by manual literature curation

From TISSUES

Protein tissue expression evidence scores by integrating experimental data

From TISSUES

Gene-tissue co-occurrence scores from text-mining biomedical abstracts

From COMPARTMENTS

Protein subcellular localization evidence scores by manual literature curation

From COMPARTMENTS

Protein subcellular localization evidence scores by integrating experimental data

From COMPARTMENTS

Gene-cellular compartment co-occurrence scores from text-mining biomedical abstracts

From Cell Maps for AI

Protein localization assemblies constructed from integrating AP-MS biomolecular interaction <strong>andstrong> IF imaging data

From Human Protein Atlas

RNA-seq gene expression profiles for cell lines from HPA

From Human Protein Atlas

RNA-seq gene expression profiles for tissues from HPA

From Human Protein Atlas

RNA-seq gene expression profiles for tissue samples from HPA

From Database of Genotypes <strong>andstrong> Phenotypes

Gene-trait associations curated from genetic association studies

From Kyoto Encyclopedia of Genes <strong>andstrong> Genomes

Sets of proteins participating in pathways from KEGG

From Kyoto Encyclopedia of Genes <strong>andstrong> Genomes

Sets of proteins participating in pathways from KEGG