Name

GO Biological Process Annotations 2015 Dataset (Archived)

From Gene Ontology

Curated annotations trong>oftrong> genes with biological processes

GO Biological Process Annotations 2023 Dataset (Archived)

From Gene Ontology

Curated annotations trong>oftrong> genes with biological processes

GO Biological Process Annotations 2025 Dataset

From Gene Ontology

curated annotations trong>oftrong> genes with biological processes

Achilles Cell Line Gene Essentiality Prtrong>oftrong>iles Dataset

From Achilles

Fitness scores for cell lines following single gene knockdowns

BioGPS Cell Line Gene Expression Prtrong>oftrong>iles Dataset

From BioGPS

mRNA expression prtrong>oftrong>iles for the NCI-60 panel trong>oftrong> cancer cell lines

BioGPS Human Cell Type and Tissue Gene Expression Prtrong>oftrong>iles Dataset

From BioGPS

mRNA expression prtrong>oftrong>iles for human tissues and cell types

BioGPS Mouse Cell Type and Tissue Gene Expression Prtrong>oftrong>iles Dataset

From BioGPS

mRNA expression prtrong>oftrong>iles for mouse tissues and cell types

CCLE Cell Line Gene CNV Prtrong>oftrong>iles Dataset

From Cancer Cell Line Encyclopedia

Gene-level copy number variation prtrong>oftrong>iles for cancer cell lines

CCLE Cell Line Gene Expression Prtrong>oftrong>iles Dataset

From Cancer Cell Line Encyclopedia

mRNA microarray expression prtrong>oftrong>iles for cancer cell lines

CCLE Cell Line Gene Mutation Prtrong>oftrong>iles Dataset

From Cancer Cell Line Encyclopedia

Gene-level mutation prtrong>oftrong>iles for cancer cell lines

COSMIC Cell Line Gene CNV Prtrong>oftrong>iles Dataset

From Catalogue trong>oftrong> Somatic Mutations In Cancer

Gene-level copy number variation prtrong>oftrong>iles for cancer cell lines

COSMIC Cell Line Gene Mutation Prtrong>oftrong>iles Dataset

From Catalogue trong>oftrong> Somatic Mutations In Cancer

Gene mutations in cancer cell lines from low-throughput or high-throughput studies

GDSC Cell Line Gene Expression Prtrong>oftrong>iles Dataset

From Genomics trong>oftrong> Drug Sensitivity in Cancer

mRNA microarray expression prtrong>oftrong>iles for cancer cell lines

Heiser et al., PNAS, 2011 Cell Line Gene Expression Prtrong>oftrong>iles Dataset

From Heiser et al., PNAS, 2011

mRNA expression prtrong>oftrong>iles for breast cancer cell lines measured by microarray

HPA Cell Line Gene Expression Prtrong>oftrong>iles Dataset

From Human Protein Atlas

RNA-seq gene expression prtrong>oftrong>iles for cell lines from HPA

HPM Cell Type and Tissue Protein Expression Prtrong>oftrong>iles Dataset

From Human Proteome Map

Protein expression prtrong>oftrong>iles for tissues and cell types

Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Prtrong>oftrong>iles Dataset

From Klijn et al., Nat. Biotechnol., 2015

Gene-level copy number variation prtrong>oftrong>iles for cancer cell lines

Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Prtrong>oftrong>iles Dataset

From Klijn et al., Nat. Biotechnol., 2015

RNA-seq gene expression prtrong>oftrong>iles for cancer cell lines

Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Prtrong>oftrong>iles Dataset

From Klijn et al., Nat. Biotechnol., 2015

SNP gene mutations in cancer cell lines identified by microarray

ProteomicsDB Cell Type and Tissue Protein Expression Prtrong>oftrong>iles Dataset

From Proteomics Database

Protein expression prtrong>oftrong>iles for tissues and cell types reprocessed from many proteomics datasets

Roadmap Epigenomics Cell and Tissue DNA Methylation Prtrong>oftrong>iles Dataset

From Roadmap Epigenomics

DNA methylation prtrong>oftrong>iles for primary cell types and tissues

Roadmap Epigenomics Cell and Tissue Gene Expression Prtrong>oftrong>iles Dataset

From Roadmap Epigenomics

mRNA expression prtrong>oftrong>iles for primary cell types and tissues

Sanger Dependency Map Cancer Cell Line Proteomics Dataset

From Sanger Cancer Dependency Map

Protein intensity values acquired using data-independent acquisition mass spectrometry (DIA-MS).

Tabula Sapiens Gene-Cell Associations Dataset

From Tabula Sapiens

Gene expression data from Tabula Sapiens scRNA-seq counts

CCLE Cell Line Proteomics Dataset

From Cancer Cell Line Encyclopedia

Protein intensity values acquired using mass spectrometry across human cancerous cell lines

HuBMAP Azimuth Cell Type Annotations Dataset

From The Human BioMolecular Atlas Program

Gene-cell type annotations from integrated reference scRNA-seq gene expression prtrong>oftrong>iles

CellMarker Gene-Cell Type Associations Dataset

From CellMarker

Cell type markers across various tissues from human and mouse scRNA-seq

Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures Dataset

From Replogle et al., Cell, 2022

Gene expression prtrong>oftrong>iles in the K562 cell line following CRISPRi genetic perturbation

Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures Dataset

From Replogle et al., Cell, 2022

Gene expression prtrong>oftrong>iles in the K562 cell line following CRISPRi genetic perturbation trong>oftrong> essential genes

Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures Dataset

From Replogle et al., Cell, 2022

Gene expression prtrong>oftrong>iles in the RPE1 cell line following CRISPRi genetic perturbation trong>oftrong> essential genes

CM4AI U2OS Cell Map Protein Localization Assemblies Dataset

From Cell Maps for AI

Protein localization assemblies constructed from integrating AP-MS biomolecular interaction and IF imaging data

CM4AI KOLF21J CRISPRi Gene Perturbation Atlas Dataset

From Cell Maps for AI

Gene expression prtrong>oftrong>iles in the KOLF2.1J cell line following CRISPRi genetic perturbation