Harmonizome 3.0

oligonucleotide/oligosaccharide-binding fold containing 1

OBFC1 and C17ORF68 (MIM 613129) are subunits of an alpha accessory factor (AAF) that stimulates the activity of DNA polymerase-alpha-primase (see MIM 176636), the enzyme that initiates DNA replication (Casteel et al., 2009 [PubMed 19119139]). OBFC1 also appears to function in a telomere-associated complex with C17ORF68 and TEN1 (C17ORF106; MIM 613130) (Miyake et al., 2009 [PubMed 19854130]).[supplied by OMIM, Nov 2009]

oligonucleotide/oligosaccharide-binding fold containing 1 pseudogene

B-cell translocation gene 1, anti-proliferative

This gene is a member of an anti-proliferative gene family that regulates cell growth and differentiation. Expression of this gene is highest in the G0/G1 phases of the cell cycle and downregulated when cells progressed through G1. The encoded protein interacts with several nuclear receptors, and functions as a coactivator of cell differentiation. This locus has been shown to be involved in a t(8;12)(q24;q22) chromosomal translocation in a case of B-cell chronic lymphocytic leukemia. [provided by RefSeq, Oct 2008]

anti-Mullerian hormone

This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate gene expression. The encoded preproprotein is proteolytically processed to generate N- and C-terminal cleavage products that homodimerize and associate to form a biologically active noncovalent complex. This complex binds to the anti-Mullerian hormone receptor type 2 and causes the regression of Mullerian ducts in the male embryo that would otherwise differentiate into the uterus and fallopian tubes. This protein also plays a role in Leydig cell differentiation and function and follicular development in adult females. Mutations in this gene result in persistent Mullerian duct syndrome. [provided by RefSeq, Jul 2016]

breast cancer anti-estrogen resistance 1 pseudogene 2

breast cancer anti-estrogen resistance 1 pseudogene 1

anti-CNG alpha 1 cation channel translation product-like

anti-silencing function 1A histone chaperone

This gene encodes a member of the H3/H4 family of histone chaperone proteins and is similar to the anti-silencing function-1 gene in yeast. The protein is a key component of a histone donor complex that functions in nucleosome assembly. It interacts with histones H3 and H4, and functions together with a chromatin assembly factor during DNA replication and repair. [provided by RefSeq, Jul 2008]

anti-silencing function 1B histone chaperone

This gene encodes a member of the H3/H4 family of histone chaperone proteins and is similar to the anti-silencing function-1 gene in yeast. The encoded protein is the substrate of the tousled-like kinase family of cell cycle-regulated kinases, and may play a key role in modulating the nucleosome structure of chromatin by ensuring a constant supply of histones at sites of nucleosome assembly. [provided by RefSeq, Jul 2008]

breast cancer anti-estrogen resistance 4 (non-protein coding)

This gene produces a spliced long non-coding RNA (lncRNA) that has been implicated in breast cancer metastasis. It was originally identified in a screen for genes responsible for the development of resistance to anti-estrogens in breast cancer cells. It is thought that release of CCL21 enables this lncRNA to bind to the SNIP1 and PNUTS transcription factors, thereby activating a non-canonical GLI-dependent hedgehog signaling pathway that promotes cancer cell migration and invasion. A similar gene in cow expresses a protein in mature oocytes and preimplantation embryos. Alternatively spliced transcript variants have been identified. [provided by RefSeq, Apr 2015]

breast cancer anti-estrogen resistance 1

The protein encoded by this gene is a member of the Crk-associated substrate (CAS) family of scaffold proteins, characterized by the presence of multiple protein-protein interaction domains and many serine and tyrosine phosphorylation sites. The encoded protein contains a Src-homology 3 (SH3) domain, a proline-rich domain, a substrate domain which contains 15 repeat of the YxxP consensus phosphorylation motif for Src family kinases, a serine-rich domain, and a bipartite Src-binding domain, which can bind both SH2 and SH3 domains. This adaptor protein functions in multiple cellular pathways, including in cell motility, apoptosis and cell cycle control. Dysregulation of this gene can have a wide range of effects, affecting different pathways, including cardiac development, vascular smooth muscle cells, liver and kidney function, endothelial migration, and cancer. [provided by RefSeq, Sep 2017]

breast cancer anti-estrogen resistance 3

Breast tumors are initially dependent on estrogens for growth and progression and can be inhibited by anti-estrogens such as tamoxifen. However, breast cancers progress to become anti-estrogen resistant. Breast cancer anti-estrogen resistance gene 3 was identified in the search for genes involved in the development of estrogen resistance. The gene encodes a component of intracellular signal transduction that causes estrogen-independent proliferation in human breast cancer cells. The protein contains a putative src homology 2 (SH2) domain, a hall mark of cellular tyrosine kinase signaling molecules, and is partly homologous to the cell division cycle protein CDC48. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2012]

TGFB1-induced anti-apoptotic factor 1

anti-Mullerian hormone receptor, type II

This gene encodes the receptor for the anti-Mullerian hormone (AMH) which, in addition to testosterone, results in male sex differentiation. AMH and testosterone are produced in the testes by different cells and have different effects. Testosterone promotes the development of male genitalia while the binding of AMH to the encoded receptor prevents the development of the mullerian ducts into uterus and Fallopian tubes. Mutations in this gene are associated with persistent Mullerian duct syndrome type II. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Sep 2009]

palmitic acid regulated anti-inflammatory lncRNA

RNF219 antisense RNA 1

ATP13A4 antisense RNA 1

ATP1B3 antisense RNA 1

TPT1 antisense RNA 1

Biomarker of malignant astrocytoma. [provided by Alliance of Genome Resources, Mar 2025]

STAU2 antisense RNA 1

ZNF197 antisense RNA 1

NCBP2 antisense RNA 1

NCBP2 antisense RNA 2 (head to head)

Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

SCAMP1 antisense RNA 1

DOCK9 antisense RNA 1

OGFR antisense RNA 1

EIF1AX antisense RNA 1

NNT antisense RNA 1

B3GALT5 antisense RNA 1

CLYBL antisense RNA 2

CLYBL antisense RNA 1

MLK7 antisense RNA 1

MED4 antisense RNA 1

YEATS2 antisense RNA 1

WASH and IL9R antisense RNA 1

WASH and IL9R antisense RNA 2

CYP4A22 antisense RNA 1

TTC21B antisense RNA 1

CTBP1 antisense RNA 2 (head to head)

Involved in postreplication repair and recombinational repair. Located in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

APCDD1L antisense RNA 1 (head to head)

OIP5 antisense RNA 1

This is a conserved gene that produces a long non-coding RNA that maintains cell proliferation in embryonic stem cells. This RNA can bind to and negatively regulate the activity of multiple cellular RNAs and microRNAs, including cyclin G associated kinase and ELAV like RNA binding protein 1. [provided by RefSeq, Dec 2017]

BCDIN3D antisense RNA 1

KCTD21 antisense RNA 1

ELFN1 antisense RNA 1

NOVA1 antisense RNA 1 (head to head)

LAMA5 antisense RNA 1

HOXA11 antisense RNA

This gene produces a long non-coding RNA in antisense to transcription of the homeobox A11 gene. This transcript may associate with chromatin factors such as Polycomb repressive complex and act as a sponge for microRNAs, thereby participating in the regulation of expression of target genes. High levels of this transcript may be associated with tumor progression. [provided by RefSeq, Dec 2017]

ZBED5 antisense RNA 1

IGBP1 antisense RNA 1

UBOX5 antisense RNA 1

FAS antisense RNA 1

Predicted to be involved in regulation of gene expression. [provided by Alliance of Genome Resources, Mar 2025]

GPR158 antisense RNA 1

JARID2 antisense RNA 1

CDIPT antisense RNA 1 (head to head)

CNTN4 antisense RNA 1

adhesion G protein-coupled receptor A1 antisense RNA 1

LDLRAD4 antisense RNA 1

MCF2L antisense RNA 1

CYP1B1 antisense RNA 1

PROSER2 antisense RNA 1

RPS6KA2 antisense RNA 1

LPP antisense RNA 2

SIRPG antisense RNA 1

PRR34 antisense RNA 1

TMEM220 antisense RNA 1

TP73 antisense RNA 1

PCBP1 antisense RNA 1

CACNA1G antisense RNA 1

HOXB cluster antisense RNA 3

Involved in negative regulation of pre-miRNA processing; protein stabilization; and regulation of RNA splicing. [provided by Alliance of Genome Resources, Mar 2025]

HOXB cluster antisense RNA 4

ATE1 antisense RNA 1

Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and nuclear speck. [provided by Alliance of Genome Resources, Mar 2025]

TESC antisense RNA 1 (head to head)

EPN2 antisense RNA 1

AATK antisense RNA 1

Predicted to enable calcium ion binding activity. Predicted to be involved in skeletal muscle contraction. Predicted to be part of troponin complex. [provided by Alliance of Genome Resources, Mar 2025]

ALOX12 antisense RNA 1

CDKN1A antisense RNA 1

ZNF252P antisense RNA 1

COL18A1 antisense RNA 2

LNX1 antisense RNA 2

IGFBP7 antisense RNA 1

WWC2 antisense RNA 2

NHS antisense RNA 1

DLGAP4 antisense RNA 1

NLGN1 antisense RNA 1

KRTAP5-1/KRTAP5-2 antisense RNA 1

MMP25 antisense RNA 1

ZMYM4 antisense RNA 1

NAV2 antisense RNA 2

NAV2 antisense RNA 3

NAV2 antisense RNA 4

NAV2 antisense RNA 5

PGM5P4 antisense RNA 1

TMEM246 antisense RNA 1

TONSL antisense RNA 1

ZNF529 antisense RNA 1

SLC16A12 antisense RNA 1

RBM26 antisense RNA 1

NOP14 antisense RNA 1

PRKX antisense RNA 1

DEPDC1 antisense RNA 1

STK24 antisense RNA 1

NAGPA antisense RNA 1

antisense UCHL1

PLCXD2 antisense RNA 1

JMJD1C antisense RNA 1

MYB antisense RNA 1

TBL1XR1 antisense RNA 1

PSMD5 antisense RNA 1 (head to head)

CDKN2B antisense RNA 1

This gene is located within the CDKN2B-CDKN2A gene cluster at chromosome 9p21. The gene product is a functional RNA molecule that interacts with polycomb repressive complex-1 (PRC1) and -2 (PRC2), leading to epigenetic silencing of other genes in this cluster. This region is a significant genetic susceptibility locus for cardiovascular disease, and has also been linked to a number of other pathologies, including several cancers, intracranial aneurysm, type-2 diabetes, periodontitis, Alzheimer's disease, endometriosis, frailty in the elderly, and glaucoma. Multiple alternatively processed transcript variants have been detected, some of which may take the form of circular RNA molecules (PMID:21151960). [provided by RefSeq, May 2014]

ST3GAL5 antisense RNA 1 (head to head)

ADAMTS19 antisense RNA 1

CPEB2 antisense RNA 1 (head to head)

IDH1 antisense RNA 1

NDUFV2 antisense RNA 1

PLCH1 antisense RNA 2

DOCK9 antisense RNA 2 (head to head)

ACTN1 antisense RNA 1

HAS2 antisense RNA 1

SSTR5 antisense RNA 1

JRKL antisense RNA 1

FREM2 antisense RNA 1

MAMDC2 antisense RNA 1

GATA3 antisense RNA 1

ISX antisense RNA 1

BHLHE40 antisense RNA 1

Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. [provided by Alliance of Genome Resources, Mar 2025]

ZFHX4 antisense RNA 1

STARD4 antisense RNA 1

LRRC75A antisense RNA 1

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

DLGAP1 antisense RNA 2

Biomarker of hepatocellular carcinoma. [provided by Alliance of Genome Resources, Mar 2025]

DLGAP1 antisense RNA 3

DLGAP1 antisense RNA 4

DLGAP1 antisense RNA 5

PAXIP1 antisense RNA 1 (head to head)

PAXIP1 antisense RNA 2

TTC39A antisense RNA 1

Predicted to enable chromatin binding activity; ribonucleoprotein complex binding activity; and transcription cis-regulatory region binding activity. Predicted to act upstream of or within with a negative effect on inflammatory response and transcription by RNA polymerase II. Predicted to act upstream of or within gene expression; nucleosome organization; and response to lipopolysaccharide. [provided by Alliance of Genome Resources, Mar 2025]

SSSCA1 antisense RNA 1 (head to head)

TAPT1 antisense RNA 1 (head to head)

ZFAT antisense RNA 1

This gene encodes a small antisense RNA that may be involved in regulating the sense strand locus, zinc finger and AT hook domain containing. This RNA may play a role in B cell function. A single nucleotide polymorphism in the promoter of this gene is associated with an increased risk of autoimmune thyroid disease.[provided by RefSeq, Jan 2010]

RASGRF2 antisense RNA 1

ROR1 antisense RNA 1

BSN antisense RNA 2 (head to head)

TTLL10 antisense RNA 1

MYO16 antisense RNA 2

SMAD5 antisense RNA 1

Enables miRNA inhibitor activity via base-pairing. Involved in lncRNA-mediated post-transcriptional gene silencing and positive regulation of BMP signaling pathway. [provided by Alliance of Genome Resources, Mar 2025]

CACTIN antisense RNA 1

SRRM2 antisense RNA 1

DPYD antisense RNA 1

DPYD antisense RNA 2

RNASEH1 antisense RNA 1

GPC5 antisense RNA 1

NIPBL antisense RNA 1 (head to head)

ZFY antisense RNA 1

WWC3 antisense RNA 1

VAC14 antisense RNA 1

SEPSECS antisense RNA 1 (head to head)

DNAJB8 antisense RNA 1

PAQR9 antisense RNA 1

USP12 antisense RNA 2 (head to head)

EGFLAM antisense RNA 3

ARHGEF3 antisense RNA 1

EXTL3 antisense RNA 1

NFIA antisense RNA 2

ZNF30 antisense RNA 1

IBA57 antisense RNA 1 (head to head)

HAND2 antisense RNA 1 (head to head)

Predicted to be involved in positive regulation of gene expression. Predicted to act upstream of or within with a positive effect on cardiac right ventricle morphogenesis. Predicted to act upstream of or within transcription elongation by RNA polymerase II. Predicted to be located in chromatin; cytoplasm; and nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

KLHL6 antisense RNA 1

HOXA transcript antisense RNA, myeloid-specific 1

This non-coding locus is located in the HOX gene cluster. Transcription of this locus is induced by retinoic acid, and transcripts likely function in regulation of myelopoiesis through transcriptional activation of several genes in the HOXA cluster, in addition to several beta-2 integrins. [provided by RefSeq, Jan 2013]

ITPR1 antisense RNA 1 (head to head)

LYST antisense RNA 1

NDP antisense RNA 1

adhesion G protein-coupled receptor L3 antisense RNA 1

RAD51 antisense RNA 1 (head to head)

LMCD1 antisense RNA 1 (head to head)

PLS1 antisense RNA 1

ATP13A5 antisense RNA 1

DARS antisense RNA 1

SYNPR antisense RNA 1

CLDN10 antisense RNA 1

USP3 antisense RNA 1

PPP1R26 antisense RNA 1

TSIX transcript, XIST antisense RNA

In mammals, dosage compensation of genes on the X chromosome occurs by X inactivation, which is regulated in cis by the X-inactivation center (XIC) and expression of the XIST non-coding RNA. This gene expresses a non-coding antisense transcript across the 3' end of the XIST locus, and is coexpressed with XIST only from the inactive X chromosome. The mouse ortholog of this locus is required for imprinted X inactivation in extraembryonic tissues and silences Xist through modification of the chromatin structure in the Xist promoter region. In contrast, imprinted X inactivation does not occur in human extraembryonic tissues and transcripts from this locus do not repress XIST expression or affect random X chromosome inactivation in embryonic cells. This transcript is thought to be unspliced and extend over more than 30 kb, but its exact nature has not been determined. [provided by RefSeq, Jul 2008]

FSIP2 antisense RNA 1

BMP7 antisense RNA 1

C20orf166 antisense RNA 1

ERICH3 antisense RNA 1

CDKN2A antisense RNA 1 (head to head)

SUCLA2 antisense RNA 1

PCED1B antisense RNA 1

SDCBP2 antisense RNA 1

EXOC3 antisense RNA 1

Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Mar 2025]

LMF1 antisense RNA 1

FLG antisense RNA 1

IFNG antisense RNA 1

OSBPL10 antisense RNA 1

FANK1 antisense RNA 1

DLX6 antisense RNA 1

Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

DLX6 antisense RNA 2

MAPT antisense RNA 1

Involved in regulatory ncRNA-mediated gene silencing. Implicated in Parkinson's disease. [provided by Alliance of Genome Resources, Mar 2025]

LLPH antisense RNA 1 (head to head)

ARHGAP26 antisense RNA 1

ZSWIM8 antisense RNA 1

TMC3 antisense RNA 1

MAST4 antisense RNA 1

OTUD6B antisense RNA 1 (head to head)

KLF3 antisense RNA 1

LANCL1 antisense RNA 1

MCM8 antisense RNA 1

cysteine/tyrosine-rich 1 antisense RNA 1

GCC2 antisense RNA 1

PEG3 antisense RNA 1

This gene is located in the paternally expressed gene 3 (PEG3) imprinted region on chromosome 19. The corresponding transcript in mouse is imprinted and regulates expression of the mouse Peg3 gene. [provided by RefSeq, Sep 2016]

ACVR2B antisense RNA 1

PTGES2 antisense RNA 1 (head to head)

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

PIK3IP1 antisense RNA 1 (head to head)

UFL1 antisense RNA 1

VPS9D1 antisense RNA 1

TBX2 antisense RNA 1

ZNF793 antisense RNA 1 (head to head)

SEMA6A antisense RNA 1

PLBD1 antisense RNA 1

COL4A2 antisense RNA 1

ALKBH3 antisense RNA 1

DOCK4 antisense RNA 1

ZNF32 antisense RNA 3

ZNF32 antisense RNA 2

ZNF32 antisense RNA 1

SLCO4A1 antisense RNA 1

LENG8 antisense RNA 1

CCND2 antisense RNA 1

TRPC7 antisense RNA 1

MKX antisense RNA 1

BACE1 antisense RNA

This gene encodes an unspliced long non-coding RNA transcribed from the opposite strand to BACE1. The encoded transcript is thought to form an RNA duplex with BACE1 mRNA thereby regulating its expression and is also thought to promote post-transcriptional feed-forward regulation of BACE1. This may lead to increased levels of beta amyloid and increased senile plaque deposition, and therefore may play a role in the pathophysiology of Alzheimer's disease. [provided by RefSeq, Jan 2015]

CADM3 antisense RNA 1

DDX11 antisense RNA 1

THAP9 antisense RNA 1

Predicted to act upstream of or within response to wounding. [provided by Alliance of Genome Resources, Mar 2025]

PRKG1 antisense RNA 1

UBAC2 antisense RNA 1

ZNF667 antisense RNA 1 (head to head)

HLA-F antisense RNA 1

ZRANB2 antisense RNA 1

SPATA17 antisense RNA 1

FAM212B antisense RNA 1

KCNMA1 antisense RNA 1

GPC5 antisense RNA 2

ST3GAL6 antisense RNA 1

GABRG3 antisense RNA 1

C1RL antisense RNA 1

DSG1 antisense RNA 1

CYP17A1 antisense RNA 1

ZNFX1 antisense RNA 1

This gene represents a snoRNA host gene that produces a non-coding RNA. Increased expression or amplification of this locus is associated with cancer progression and metastasis. This transcript regulates expression of genes involved in differentiation. It may act a molecular sponge for microRNAs. Alternatively spliced transcript variants have been observed. [provided by RefSeq, Dec 2017]

ITPK1 antisense RNA 1

GDNF antisense RNA 1 (head to head)

A2ML1 antisense RNA 1

LBX1 antisense RNA 1 (head to head)

ST7 antisense RNA 1

ST7 antisense RNA 2

GMDS antisense RNA 1 (head to head)

ARNTL2 antisense RNA 1

ZEB2 antisense RNA 1

This gene produces a spliced long non-coding RNA which is a natural antisense transcript corresponding to the 5' UTR of zinc finger E-box binding homeobox 2 (ZEB2). It is thought that this transcript may be involved in the regulation of ZEB2 expression, and may play a role in the progression of bladder cancer. [provided by RefSeq, Aug 2015]

DDX26B antisense RNA 1

LRRC3 antisense RNA 1 (head to head)

CD27 antisense RNA 1

SOX9 antisense RNA 1

HNF1A antisense RNA 1

Biomarker of colon cancer and stomach cancer. [provided by Alliance of Genome Resources, Mar 2025]

CDH23 antisense RNA 1

HIF1A antisense RNA 1

HIF1A antisense RNA 2

Enables miRNA inhibitor activity via base-pairing. Involved in lncRNA-mediated post-transcriptional gene silencing and positive regulation of miRNA catabolic process. [provided by Alliance of Genome Resources, Mar 2025]

FLVCR1 antisense RNA 1 (head to head)

ETV5 antisense RNA 1

TMEM44 antisense RNA 1

BZRAP1 antisense RNA 1

LURAP1L antisense RNA 1

COL5A1 antisense RNA 1

TNK2 antisense RNA 1

ITGA9 antisense RNA 1

WWTR1 antisense RNA 1

MLLT4 antisense RNA 1 (head to head)

MAN1B1 antisense RNA 1 (head to head)

ZNF503 antisense RNA 1

ZNF503 antisense RNA 2

ATP6V1B1 antisense RNA 1

GFOD1 antisense RNA 1

PYCARD antisense RNA 1

USP12 antisense RNA 1

BOK antisense RNA 1

KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)

Human chromosomal region 11p15.5 contains two clusters of epigenetically-regulated genes that are expressed from only one chromosome in a parent-of-origin manner. Each cluster, or imprinted domain, is regulated by a functionally independent imprinting control region (ICR). The human CDKN1C/KCNQ1OT1 domain is regulated by an ICR located in an intron of KCNQ1, and contains at least eight genes that are expressed exclusively or preferentially from the maternally-inherited allele. The DNA of the ICR is specifically methylated on the maternally-inherited chromosome, and unmethylated on the paternally-inherited chromosome. The ICR contains the promoter of the KCNQ1OT1 gene that is exclusively expressed from the paternal allele. The KCNQ1OT1 transcript is the antisense to the KCNQ1 gene and is a unspliced long non-coding RNA. It interacts with chromatin and regulates transcription of multiple target genes through epigenetic modifications. The transcript is abnormally expressed from both chromosomes in most patients with Beckwith-Wiedemann syndrome, and the transcript also plays an important role in colorectal carcinogenesis. [provided by RefSeq, Apr 2012]

ZFX antisense RNA 1

LIFR antisense RNA 1

RORB antisense RNA 1

progesterone receptor antisense RNA

RAB6C antisense RNA 1

SEC24B antisense RNA 1

This lncRNA contains a single Alu element which, along with 1/2-sbsRNA3, appears to target the 3' UTR Alu element in MTAP. Downregulation of the RNA appears to up-regulate the target. [provided by RefSeq, Feb 2011]

EFCAB6 antisense RNA 1

TM4SF1 antisense RNA 1

NKX2-2 antisense RNA 1

NKX2-1 antisense RNA 1

FOCAD antisense RNA 1

RFPL1 antisense RNA 1

KRBOX1 antisense RNA 1

DPP10 antisense RNA 1

DPP10 antisense RNA 3

MORC1 antisense RNA 1

EZR antisense RNA 1

TAB3 antisense RNA 1

RGPD4 antisense RNA 1 (head to head)

COL4A2 antisense RNA 2

RAMP2 antisense RNA 1

promoter of MAT2A antisense radiation-induced circulating long non-coding RNA

Enables dsDNA-RNA triple helix-forming chromatin adaptor activity and mRNA binding activity. Involved in cellular response to ionizing radiation and regulatory ncRNA-mediated heterochromatin formation. Is active in cytosol and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SLC39A12 antisense RNA 1

MACROD2 antisense RNA 1

EDNRB antisense RNA 1

LACTB2 antisense RNA 1

HDAC11 antisense RNA 1

HID1 antisense RNA 1

CCDC39 antisense RNA 1

RORA antisense RNA 1

PPP4R1 antisense RNA 1

PHEX antisense RNA 1

ANO1 antisense RNA 1

HOXB cluster antisense RNA 1

EML2 antisense RNA 1

KCNQ1 antisense RNA 1

RERG antisense RNA 1

RORA antisense RNA 2

HLX antisense RNA 1

PGM5 antisense RNA 1

DLG1 antisense RNA 1

ARSD antisense RNA 1

C15orf59 antisense RNA 1

OSGEPL1 antisense RNA 1

NUTM2A antisense RNA 1

EMX2 opposite strand/antisense RNA

SPATA13 antisense RNA 1

DNAH17 antisense RNA 1

RNF139 antisense RNA 1 (head to head)

GRID1 antisense RNA 1

KIRREL3 antisense RNA 2

KIRREL3 antisense RNA 3

KIRREL3 antisense RNA 1

TMLHE antisense RNA 1

EVX1 antisense RNA

Predicted to enable chromatin binding activity. Predicted to be part of histone methyltransferase complex. [provided by Alliance of Genome Resources, Mar 2025]

PVRL3 antisense RNA 1

PTPRD antisense RNA 1

LNX1 antisense RNA 1

HTR2A antisense RNA 1

CA3 antisense RNA 1

LMO7 antisense RNA 1

RASAL2 antisense RNA 1

KIAA1614 antisense RNA 1

IPO9 antisense RNA 1

HOXD cluster antisense RNA 2

RRS1 antisense RNA 1 (head to head)

PABPC5 antisense RNA 1

SATB1 antisense RNA 1

GLIS3 antisense RNA 1

ARHGAP5 antisense RNA 1 (head to head)

Enables ubiquitin ligase inhibitor activity. Involved in negative regulation of proteasomal ubiquitin-dependent protein catabolic process. [provided by Alliance of Genome Resources, Mar 2025]

ZNRF3 antisense RNA 1

ZNF674 antisense RNA 1 (head to head)

GNG12 antisense RNA 1

TMEM72 antisense RNA 1

PHKA1 antisense RNA 1

NTRK3 antisense RNA 1

PIK3CD antisense RNA 1

OSER1 antisense RNA 1 (head to head)

ADAMTS9 antisense RNA 2

Implicated in diabetic retinopathy. [provided by Alliance of Genome Resources, Mar 2025]

CSE1L antisense RNA 1

MZF1 antisense RNA 1

THSD4 antisense RNA 1

THSD4 antisense RNA 2

USP30 antisense RNA 1

RFX3 antisense RNA 1

TCEB3 antisense RNA 1

UBE2E2 antisense RNA 1 (head to head)

SEPT7 antisense RNA 1 (head to head)

NPSR1 antisense RNA 1

This gene is located within a region that has been associated with asthma susceptibility. The locus is considered non-protein-coding based on lack of protein homology and a lack of experimental support for an encoded protein. Three alternatively spliced transcript variants have been identified for this gene. [provided by RefSeq, May 2010]

STK4 antisense RNA 1 (head to head)

AGBL1 antisense RNA 1

LOXL1 antisense RNA 1

LSAMP antisense RNA 1

LATS2 antisense RNA 1

TBC1D22A antisense RNA 1

IL20RB antisense RNA 1

USP46 antisense RNA 1

SCOC antisense RNA 1

RBMS3 antisense RNA 1

PLA2G4E antisense RNA 1

PITPNA antisense RNA 1

NEBL antisense RNA 1

RPARP antisense RNA 1

SPATA8 antisense RNA 1 (head to head)

DNAJC9 antisense RNA 1

PINK1 antisense RNA

OTX2 antisense RNA 1 (head to head)

LIPE antisense RNA 1

SLC25A5 antisense RNA 1

EPHA1 antisense RNA 1

CELSR3 antisense RNA 1 (head to head)

WNT5A antisense RNA 1

FAM222A antisense RNA 1

FOXD2 antisense RNA 1 (head to head)

RBPMS antisense RNA 1

MKLN1 antisense RNA

PEX5L antisense RNA 1

IQCH antisense RNA 1

ADD3 antisense RNA 1

ENTPD1 antisense RNA 1

PPEF1 antisense RNA 1

SEMA3B antisense RNA 1 (head to head)

PGM5P3 antisense RNA 1

DNM3 opposite strand/antisense RNA

Enables miRNA inhibitor activity via base-pairing. Involved in cellular response to transforming growth factor beta stimulus and regulation of macromolecule metabolic process. Predicted to be part of RISC complex. [provided by Alliance of Genome Resources, Mar 2025]

ZNF385D antisense RNA 2

NDUFA6 antisense RNA 1 (head to head)

DIAPH3 antisense RNA 1

DIAPH3 antisense RNA 2

NRG3 antisense RNA 1

CLSTN2 antisense RNA 1

RAPGEF4 antisense RNA 1

ITIH4 antisense RNA 1

EIF2B5 antisense RNA 1

EPB41L4A antisense RNA 1

EPB41L4A antisense RNA 2 (head to head)

PCNA antisense RNA 1

KMT2E antisense RNA 1 (head to head)

CBR3 antisense RNA 1

PLCG1 antisense RNA 1

STX18 antisense RNA 1 (head to head)

ZNF341 antisense RNA 1

CHL1 antisense RNA 2

CHL1 antisense RNA 1

apoptotic BCL2L1-antisense long non-coding RNA

GK antisense RNA 1

RCAN3 antisense

SLC7A11 antisense RNA 1

MACC1 antisense RNA 1

NUP50 antisense RNA 1 (head to head)

ZNF528 antisense RNA 1

LAMP5 antisense RNA 1

ABCA9 antisense RNA 1

GCSAML antisense RNA 1

MYLK antisense RNA 1

TSPEAR antisense RNA 2

TSPEAR antisense RNA 1

RAB30 antisense RNA 1 (head to head)

AADACL2 antisense RNA 1

OR2A1 antisense RNA 1

PRRT3 antisense RNA 1

RBM12B antisense RNA 1

CARD8 antisense RNA 1

SP2 antisense RNA 1

MSC antisense RNA 1

ATP11A antisense RNA 1

myosin heavy chain gene cluster antisense RNA

Predicted to enable primary miRNA binding activity. Predicted to be involved in response to muscle activity and skeletal muscle fiber development. Predicted to act upstream of or within with a positive effect on gene expression. Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

WT1 antisense RNA

This gene is located upstream of the Wilms tumor 1 (WT1) gene; these two genes are bi-directionally transcribed from the same promoter region. This gene is imprinted in kidney, with preferential expression from the paternal allele. Imprinting defects at chromosome 11p13 may contribute to tumorigenesis. [provided by RefSeq, May 2014]

PITRM1 antisense RNA 1

APOA1 antisense RNA

OVOL1 antisense RNA 1

NADK2 antisense RNA 1

EGFLAM antisense RNA 4

EGFLAM antisense RNA 1

FBXL19 antisense RNA 1 (head to head)

EGFLAM antisense RNA 2

F10 antisense RNA 1

SRP54 antisense RNA 1 (head to head)

DNAJC27 antisense RNA 1

LGALS8 antisense RNA 1

VIPR1 antisense RNA 1

TET2 antisense RNA 1

CLIP1 antisense RNA 1

DACT3 antisense RNA 1

ZNF649 antisense RNA 1

ZMIZ1 antisense RNA 1

PKN2 antisense RNA 1

SYP antisense RNA 1

P4HA2 antisense RNA 1

BMPR1B antisense RNA 1 (head to head)

NLGN4Y antisense RNA 1

EIF1B antisense RNA 1

C5orf66 antisense RNA 2

RAET1E antisense RNA 1

URB1 antisense RNA 1 (head to head)

IDI2 antisense RNA 1

RPL34 antisense RNA 1 (head to head)

CHRM3 antisense RNA 2

CHRM3 antisense RNA 1

SAMD12 antisense RNA 1

PRICKLE2 antisense RNA 1

PRICKLE2 antisense RNA 3

PRICKLE2 antisense RNA 2

AGBL5 antisense RNA 1

WDR11 antisense RNA 1

NFYC antisense RNA 1

ST3GAL4 antisense RNA 1 (head to head)

FAM83C antisense RNA 1

NIFK antisense RNA 1

MRGPRG antisense RNA 1

RNASEH2B antisense RNA 1

C1QTNF9B antisense RNA 1 pseudogene

ADIRF antisense RNA 1

PIK3CD antisense RNA 2

IQCJ-SCHIP1 readthrough antisense RNA 1

PKIA antisense RNA 1

PXN antisense RNA 1

BVES antisense RNA 1

FGF13 antisense RNA 1

SLC26A4 antisense RNA 1

BOLA3 antisense RNA 1 (head to head)

DLG2 antisense RNA 1

EAF1 antisense RNA 1

MAGEA8 antisense RNA 1 (head to head)

SMAD1 antisense RNA 2

SMAD1 antisense RNA 1

ZNF350 antisense RNA 1

ZNF385D antisense RNA 1

CERS3 antisense RNA 1

solute carrier family 22 (organic cation transporter), member 18 antisense

FMR1 antisense RNA 1

Predicted to be involved in negative regulation of apoptotic process. [provided by Alliance of Genome Resources, Mar 2025]

ALDH1L1 antisense RNA 2

ATP6V0E2 antisense RNA 1

HS6ST2 antisense RNA 1

MATN1 antisense RNA 1

TMPO antisense RNA 1

CHODL antisense RNA 1

RUNDC3A antisense RNA 1

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

GLYCTK antisense RNA 1

KIF9 antisense RNA 1

STX17 antisense RNA 1

PAN3 antisense RNA 1

ZSCAN16 antisense RNA 1

MKNK1 antisense RNA 1

PTPRG antisense RNA 1

WWC2 antisense RNA 1

FOXD3 antisense RNA 1 (head to head)

NDFIP2 antisense RNA 1

C21orf62 antisense RNA 1

RAP2C antisense RNA 1

DLEU7 antisense RNA 1

RUVBL1 antisense RNA 1

SPAG5 antisense RNA 1

DNAJC3 antisense RNA 1 (head to head)

HOXC13 antisense RNA

SIX3 antisense RNA 1

Predicted to be involved in regulation of gene expression. [provided by Alliance of Genome Resources, Mar 2025]

TCF21 antisense RNA inducing promoter demethylation

STEAP3 antisense RNA 1

RHPN1 antisense RNA 1 (head to head)

CECR5 antisense RNA 1

UPK1A antisense RNA 1

MFI2 antisense RNA 1

CLRN1 antisense RNA 1

TTN antisense RNA 1

This gene encodes a non-coding RNA transcribed from the opposite strand to the titin gene. [provided by RefSeq, Aug 2016]

KCND3 antisense RNA 1

CSTF3 antisense RNA 1 (head to head)

ASTN2 antisense RNA 1

TRAF3IP2 antisense RNA 1

HNF4A antisense RNA 1

DMD antisense RNA 3

RUSC1 antisense RNA 1

GTF3C2 antisense RNA 1

SLC8A1 antisense RNA 1

ADNP antisense RNA 1

NAALADL2 antisense RNA 2

NAALADL2 antisense RNA 3

NAALADL2 antisense RNA 1

MCPH1 antisense RNA 1

GATA2 antisense RNA 1

HPN antisense RNA 1

PACRG antisense RNA 1

LMLN antisense RNA 1

ABHD15 antisense RNA 1

FLNB antisense RNA 1

COL18A1 antisense RNA 1

CADM2 antisense RNA 2

CADM2 antisense RNA 1

AP4B1 antisense RNA 1

NCOA7 antisense RNA 1

XIRP2 antisense RNA 1

TAF1A antisense RNA 1

ABCC5 antisense RNA 1

MCM3AP antisense RNA 1

INHBA antisense RNA 1

PLCH1 antisense RNA 1

GRTP1 antisense RNA 1

XXYLT1 antisense RNA 1

ARRDC3 antisense RNA 1

BAALC antisense RNA 1

BAALC antisense RNA 2

CACNA1C antisense RNA 1

C8orf37 antisense RNA 1

PLCL2 antisense RNA 1

RDH10 antisense RNA 1

TOB1 antisense RNA 1

DBH antisense RNA 1

SLC14A2 antisense RNA 1

TRAPPC12 antisense RNA 1

MEF2C antisense RNA 1

ADAMTS9 antisense RNA 1

LCMT1 antisense RNA 2

UBE2Q1 antisense RNA 1

LCMT1 antisense RNA 1

ghrelin opposite strand/antisense RNA

This gene is an antisense gene of the ghrelin/obestatin prepropeptide gene. Alternatively spliced transcript variants have been identified and they may function as non-coding regulatory RNAs. [provided by RefSeq, Jan 2013]

DDR1 antisense RNA 1 (head to head)

TOPORS antisense RNA 1

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

DAB1 antisense RNA 1

FAM83H antisense RNA 1 (head to head)

TMEM212 antisense RNA 1

CAPN10 antisense RNA 1 (head to head)

GRM5 antisense RNA 1

TM4SF19 antisense RNA 1

SNAP25 antisense RNA 1

Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. [provided by Alliance of Genome Resources, Mar 2025]

WDFY3 antisense RNA 2

WDFY3 antisense RNA 1

KDM4A antisense RNA 1

GATA6 antisense RNA 1 (head to head)

SAP30L antisense RNA 1 (head to head)

TMEM254 antisense RNA 1

MTOR antisense RNA 1

FGF10 antisense RNA 1

MYCBP2 antisense RNA 2

MYCBP2 antisense RNA 1

THRB antisense RNA 1

HOXC cluster antisense RNA 2

RFPL3 antisense

CELF2 antisense RNA 1

Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Mar 2025]

MANEA antisense RNA 1 (head to head)

RALY antisense RNA 1

TMEM9B antisense RNA 1

JAZF1 antisense RNA 1

ARHGEF19 antisense RNA 1

DSC1/DSC2 antisense RNA

LAMTOR5 antisense RNA 1

PHKA2 antisense RNA 1

HOXA cluster antisense RNA 3

HOXA cluster antisense RNA 2

This gene produces a long non-coding RNA that promotes cell proliferation. This transcript may interact with enhancer of zeste homolog 2 Polycomb repressive complex to repress gene expression. [provided by RefSeq, Dec 2017]

AZIN1 antisense RNA 1

ARMCX3 antisense RNA 1

LY86 antisense RNA 1

RAD21 antisense RNA 1

EFCAB14 antisense RNA 1

ZC3H18 antisense RNA 1 (head to head)

CASK antisense RNA 1

UBE2E1 antisense RNA 1

ZNF205 antisense RNA 1

Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. [provided by Alliance of Genome Resources, Mar 2025]

CNTFR antisense RNA 1

DLGAP1 antisense RNA 1

KANSL1 antisense RNA 1

IQCF5 antisense RNA 1

HTR5A antisense RNA 1

HMMR antisense RNA 1

DCTN1 antisense RNA 1

EGFR antisense RNA 1

C9orf173 antisense RNA 1

OCIAD1 antisense RNA 1

ARHGEF7 antisense RNA 2

ARHGEF7 antisense RNA 1

ADARB2 antisense RNA 1

ENTPD3 antisense RNA 1

TSC22D1 antisense RNA 1

antisense of IGF2R non-protein coding RNA

Both spliced and un-spliced long non-coding RNAs are transcribed from this gene. This gene overlaps on the opposite strand the second intron of the insulin-like growth factor 2 receptor gene; a CpG island associated with the second intron denotes an active promoter that drives the expression of this gene. The related mouse gene is responsible for silencing the insulin-like growth factor 2 receptor gene and flanking genes in the imprinted gene cluster of mice. This gene may be expressed in Wilms tumors. [provided by RefSeq, Feb 2013]

SNAP47 antisense RNA 1

TMEM26 antisense RNA 1

FER1L6 antisense RNA 2

FER1L6 antisense RNA 1

C1QTNF9B antisense RNA 1

Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Mar 2025]

DIO2 antisense RNA 1

WD repeat containing, antisense to TP53

This gene encodes an essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex required for telomere synthesis. This protein is enriched in Cajal bodies, nuclear sites of RNP processing that are important for telomerase function. It interacts with dyskerin, TERT and TERC, other components of active telomerase, and with small Cajal body RNAs (scaRNAs), which are involved in modifying splicing RNAs. This mRNA also functions as a p53 antisense transcript, that regulates endogenous p53 mRNA levels and further induction of p53 protein by targeting the 5' untranslated region of p53 mRNA. Alternatively spliced transcript variants which differ only in the 5' UTR have been found for this gene. [provided by RefSeq, Mar 2011]

FOXG1 antisense RNA 1 (head to head)

RHOXF1 antisense RNA 1

TXNDC12 antisense RNA 1

RNF185 antisense RNA 1

TFAP2A antisense RNA 1

ZFPM2 antisense RNA 1

SOCS2 antisense RNA 1

ANO1 antisense RNA 2 (head to head)

SCEL antisense RNA 1

MMP24 antisense RNA 1

DLG5 antisense RNA 1

FAM13A antisense RNA 1

NFIA antisense RNA 1

RASSF1 antisense RNA 1

ARRDC1 antisense RNA 1

This transcribed locus is thought to be non-coding. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2014]

A1BG antisense RNA 1

CEBPA antisense RNA 1 (head to head)

UBA6 antisense RNA 1 (head to head)

USP27X antisense RNA 1 (head to head)

SH3BP5 antisense RNA 1

KLHL30 antisense RNA 1

KLHL7 antisense RNA 1 (head to head)

ITGB2 antisense RNA 1

RBM5 antisense RNA 1

This gene produces a non-coding RNA in antisense to the RNA binding motif protein 5 (RBM5) gene. This transcript interacts with beta catenin and may regulate expression of WNT target genes. [provided by RefSeq, Sep 2016]

FRMD6 antisense RNA 1

KCNIP2 antisense RNA 1

IL21R antisense RNA 1

YTHDF3 antisense RNA 1 (head to head)

AQP4 antisense RNA 1

NPHP3 antisense RNA 1

TMEM92 antisense RNA 1

MYLK antisense RNA 2

DIO3 opposite strand/antisense RNA (head to head)

The mouse and human DIO3OS and DIO3 (MIM 601038) genes overlap and are transcribed in opposite directions. The mouse Dio3 gene is imprinted from the paternal allele during fetal development, suggesting that DIO3OS is a noncoding gene that may have a role in maintaining monoallelic expression of DIO3 (Hernandez et al., 2004 [PubMed 14962667]).[supplied by OMIM, Mar 2008]

NEXN antisense RNA 1

RBMS3 antisense RNA 3

RBMS3 antisense RNA 2

FRMPD4 antisense RNA 1

MRPL23 antisense RNA 1

LRRC2 antisense RNA 1

UNC5B antisense RNA 1

SRGAP2 antisense RNA 1

ITPKB antisense RNA 1

MAPKAPK5 antisense RNA 1

CCDC13 antisense RNA 1

HCFC1 antisense RNA 1

HEXA antisense RNA 1

T cell receptor gamma locus antisense RNA 1

DPH6 antisense RNA 1 (head to head)

NPPA antisense RNA 1

Predicted to enable mRNA binding activity. Predicted to be involved in regulation of gene expression. [provided by Alliance of Genome Resources, Mar 2025]

ADPGK antisense RNA 1

POT1 antisense RNA 1

STARD13 antisense RNA

GSN antisense RNA 1

HLTF antisense RNA 1

GAS6 antisense RNA 1

GAS6 antisense RNA 2 (head to head)

BTBD9 antisense RNA 1

DNMBP antisense RNA 1

SSBP3 antisense RNA 1

Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Mar 2025]

TPRG1 antisense RNA 1

TPRG1 antisense RNA 2

NUCB1 antisense RNA 1

LEMD1 antisense RNA 1

MORF4L2 antisense RNA 1

CELF2 antisense RNA 2

LARS2 antisense RNA 1

CHKB antisense RNA 1 (head to head)

KCNJ2 antisense RNA 1 (head to head)

MGAT3 antisense RNA 1

MEIS1 antisense RNA 3

MORC2 antisense RNA 1

MEIS1 antisense RNA 2

VAV3 antisense RNA 1

PPP3CB antisense RNA 1 (head to head)

GABPB1 antisense RNA 1

CDR1 antisense RNA

This gene represents naturally-occurring RNAs transcribed in antisense to CDR1 (cerebellar degeneration-related protein 1, 34kDa; GeneID:1038), some of which may be circular rather than linear. The circular RNA produced by this locus acts as an miRNA sponge, preventing the miRNA from interacting with target transcripts. No RefSeq transcript is created for the circular RNA. [provided by RefSeq, Feb 2024]

IGF1R antisense imprinted non-protein coding RNA

This gene expresses a long non-coding RNA in antisense to the insulin-like growth factor type I receptor (IGF1R) gene. This transcript is imprinted and expressed from the paternal allele. It interacts with chromatin and may promote long-range DNA interactions that influence the regulation of gene expression. [provided by RefSeq, Nov 2015]

NRSN2 antisense RNA 1

ZBED3 antisense RNA 1

PARD3 antisense RNA 1

SLIT1 antisense RNA 1

FAM83A antisense RNA 1

ZBTB11 antisense RNA 1

SORCS3 antisense RNA 1

ZMYND10 antisense RNA 1

PRMT5 antisense RNA 1

GRIK1 antisense RNA 2

GRIK1 antisense RNA 1

WDR86 antisense RNA 1

ZNF561 antisense RNA 1 (head to head)

CERS6 antisense RNA 1

ST20 antisense RNA 1

SMIM2 antisense RNA 1

NEURL1 antisense RNA 1

ENOX1 antisense RNA 2

ENOX1 antisense RNA 1

THUMPD3 antisense RNA 1

UBE2R2 antisense RNA 1

MLIP antisense RNA 1

FBXO22 antisense RNA 1

TRAM2 antisense RNA 1 (head to head)

TGFB2 antisense RNA 1 (head to head)

TRHDE antisense RNA 1

DSCAM antisense RNA 1

MID1IP1 antisense RNA 1

MEST intronic transcript 1, antisense RNA

This gene encodes a non-protein coding antisense RNA that is imprinted, and preferentially expressed from the paternal allele. It is located in an intron of MEST gene in the opposite orientation, and shares the promoter region in common with one of the promoters (P2) of MEST gene. The antisense RNA is expressed predominantly in testis and mature motile spermatozoa, suggesting that it may be involved in the regulation of MEST expression during development.[provided by RefSeq, Oct 2010]

IGSF11 antisense RNA 1

TEX36 antisense RNA 1

CKMT2 antisense RNA 1

NUTM2B antisense RNA 1

C3orf67 antisense RNA 1

PCCA antisense RNA 1

HHATL antisense RNA 1

ERICH1 antisense RNA 1

MBNL1 antisense RNA 1

CALML3 antisense RNA 1

A2M antisense RNA 1 (head to head)

CRYM antisense RNA 1

Predicted to act upstream of or within hematopoietic progenitor cell differentiation. [provided by Alliance of Genome Resources, Mar 2025]

MYO16 antisense RNA 1

CFLAR antisense RNA 1

ANKRD34C antisense RNA 1

SRD5A3 antisense RNA 1

DDC antisense RNA 1

JHDM1D antisense RNA 1 (head to head)

EMC3 antisense RNA 1

ZNRD1 antisense RNA 1

SMG7 antisense RNA 1

HOX transcript antisense RNA

This gene is located within the Homeobox C (HOXC) gene cluster on chromosome 12 and is co-expressed with the HOXC genes. It functions through an RNA product, which binds lysine specific demethylase 1 (LSD1) and Polycomb repressive complex 2 (PRC2), and serves as a scaffold to assemble these regulators at the HOXD gene cluster, thereby promoting epigenetic repression of HOXD. This gene is highly expressed in multiple tumors. Alternatively spliced transcript variants have been identified. [provided by RefSeq, Feb 2019]

STPG2 antisense RNA 1

TEX26 antisense RNA 1

TAT antisense RNA 1

DCUN1D2 antisense RNA

CACNA1C antisense RNA 2

GYG2 antisense RNA 1

MTUS2 antisense RNA 1

GAS8 antisense RNA 1

This gene encodes a long non-coding RNA (lncRNA) that may function as a tumor suppressor. Mutations in this gene have been identified in human papillary thyroid carcinoma (PTC) patients that abrogate the ability of encoded lncRNA to inhibit cancer cell growth. [provided by RefSeq, May 2017]

ST8SIA6 antisense RNA 1

XXYLT1 antisense RNA 2

TLR8 antisense RNA 1

PRC1 antisense RNA 1

CCDC183 antisense RNA 1

VPS13A antisense RNA 1

ZNF582 antisense RNA 1 (head to head)

UGDH antisense RNA 1

CCDC37 antisense RNA 1 (head to head)

BARX1 antisense RNA 1 (head to head)

MEOX2 antisense RNA 1 (head to head)

SACS antisense RNA 1

SBF2 antisense RNA 1

HORMAD2 antisense RNA 1

DENND5B antisense RNA 1

RMDN2 antisense RNA 1

TOLLIP antisense RNA 1 (head to head)

KCNAB1 antisense RNA 2

PTPRJ antisense RNA 1

THOC7 antisense RNA 1

TMEM5 antisense RNA 1

HHIP antisense RNA 1

SMARCA5 antisense RNA 1

FGF14 antisense RNA 1

FGF14 antisense RNA 2

DICER1 antisense RNA 1

HTT antisense RNA (head to head)

Predicted to be involved in regulation of gene expression. [provided by Alliance of Genome Resources, Mar 2025]

DLEU1 antisense RNA 1

FEZF1 antisense RNA 1

PCDH9 antisense RNA 4

PCDH9 antisense RNA 2

TMEM161B antisense RNA 1

PCDH9 antisense RNA 1

CATIP antisense RNA 1

CATIP antisense RNA 2

WASF3 antisense RNA 1

GLIS2 antisense RNA 1

CSMD2 antisense RNA 1

LIMD1 antisense RNA 1

IL21 antisense RNA 1

GNAS antisense RNA 1

This gene produces a paternally-imprinted antisense RNA transcript that helps regulate the GNAS complex locus, which encodes the alpha subunit of the stimulatory G protein. Defects in this gene are a cause of pseudohypoparathyroidism type Ib.[provided by RefSeq, Jun 2010]

ENO1 antisense RNA 1

KTN1 antisense RNA 1

PRKCQ antisense RNA 1

FTCD antisense RNA 1

ANKRD33B antisense RNA 1

ELMO1 antisense RNA 1

DAOA antisense RNA 1

ACTA2 antisense RNA 1

IFT74 antisense RNA 1

C1QTNF9 antisense RNA 1

RNF217 antisense RNA 1 (head to head)

GPR1 antisense RNA

This gene is thought to produce a non-coding RNA. It is situated adjacent to a differentially methylated region (DMR) and is imprinted and paternally expressed in the placenta. [provided by RefSeq, Nov 2015]

ZNF790 antisense RNA 1

SH3PXD2A antisense RNA 1

SNAI3 antisense RNA 1

FGF12 antisense RNA 2

FGF12 antisense RNA 3

ASB16 antisense RNA 1

MNX1 antisense RNA 1 (head to head)

NDUFB2 antisense RNA 1

FGD5 antisense RNA 1

EIF3J antisense RNA 1 (head to head)

TMPRSS4 antisense RNA 1

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

IGF2 antisense RNA

This gene is expressed in antisense to the insulin-like growth factor 2 (IGF2) gene and is imprinted and paternally expressed. It is thought to be non-coding because the putative protein is not conserved and translation is predicted to trigger nonsense mediated decay (NMD). Transcripts from this gene are produced in tumors and may function to suppress cell growth. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2015]

H1FX antisense RNA 1

FARP1 antisense RNA 1

HOXD antisense growth-associated long non-coding RNA

ZNF436 antisense RNA 1

UXT antisense RNA 1