Name

Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq Dataset

From Allen Brain Atlas

mRNA expression profiles for human brain tissue samples spanning 31 time points and 26 brain structures

ENCODE Histone Modification Site Profiles Dataset

From Encyclopedia of DNA Elements

Histone site modification profiles for cell lines from ENCODE

Roadmap Epigenomics Histone Modification Site Profiles Dataset

From Roadmap Epigenomics

Histone modification profiles for primary cells and tissues

HuBMAP ASCT+B Augmented with RNA-seq Coexpression Dataset

From The Human BioMolecular Atlas Program

Anatomical structure and cell type biomarker annotations from the HuBMAP ASCT+B tables, augmented with RNA-seq coexpression data from ARCHS4

RMRP Gene

RNA component of mitochondrial RNA processing endoribonuclease

This gene encodes the RNA component of mitochondrial RNA processing endoribonuclease, which cleaves mitochondrial RNA at a priming site of mitochondrial DNA replication. This RNA also interacts with the telomerase reverse transcriptase catalytic subunit to form a distinct ribonucleoprotein complex that has RNA-dependent RNA polymerase activity and produces double-stranded RNAs that can be processed into small interfering RNA. Mutations in this gene are associated with cartilage-hair hypoplasia.[provided by RefSeq, Mar 2010]

NMTRS-TGA3-1 Gene

nuclear-encoded mitochondrial transfer RNA-Ser (TGA) 3-1

NMTRL-TAA1-1 Gene

nuclear-encoded mitochondrial transfer RNA-Leu (TAA) 1-1

LOC100421620 Gene

polymerase (RNA) mitochondrial (DNA directed) pseudogene

NMTRQ-TTG8-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 8-1

NMTRQ-TTG2-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 2-1

NMTRQ-TTG3-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 3-1

NMTRQ-TTG12-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 12-1

NMTRS-TGA2-1 Gene

nuclear-encoded mitochondrial transfer RNA-Ser (TGA) 2-1

NMTRQ-TTG6-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 6-1

NMTRQ-TTG13-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 13-1

NMTRV-TAC1-1 Gene

nuclear-encoded mitochondrial transfer RNA-Val (TAC) 1-1

NMTRL-TAA4-1 Gene

nuclear-encoded mitochondrial transfer RNA-Leu (TAA) 4-1

NMTRL-TAA5-1 Gene

nuclear-encoded mitochondrial transfer RNA-Leu (TAA) 5-1

NMTRQ-TTG7-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 7-1

NMTRS-TGA1-1 Gene

nuclear-encoded mitochondrial transfer RNA-Ser (TGA) 1-1

NMTRQ-TTG11-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 11-1

NMTRL-TAA3-1 Gene

nuclear-encoded mitochondrial transfer RNA-Leu (TAA) 3-1

POLRMT Gene

polymerase (RNA) mitochondrial (DNA directed)

This gene encodes a mitochondrial DNA-directed RNA polymerase. The gene product is responsible for mitochondrial gene expression as well as for providing RNA primers for initiation of replication of the mitochondrial genome. Although this polypeptide has the same function as the three nuclear DNA-directed RNA polymerases, it is more closely related to RNA polymerases of phage and mitochondrial polymerases of lower eukaryotes. [provided by RefSeq, Jul 2008]

NMTRQ-TTG10-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 10-1

NMTRQ-TTG9-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 9-1

NMTRL-TAA6-1 Gene

nuclear-encoded mitochondrial transfer RNA-Leu (TAA) 6-1

NMTRP-TGG1-1 Gene

nuclear-encoded mitochondrial transfer RNA-Pro (TGG) 1-1

NMTRL-TAA2-1 Gene

nuclear-encoded mitochondrial transfer RNA-Leu (TAA) 2-1

NMTRQ-TTG1-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 1-1

NMTRQ-TTG15-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 15-1

NMTRQ-TTG14-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 14-1

LOC89844 Gene

mitochondrial RNA polymerase pseudogene

POLRMTP1 Gene

polymerase (RNA) mitochondrial (DNA directed) pseudogene 1

NMTRQ-CTG1-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (CTG) 1-1

NMTRQ-TTG4-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 4-1

NMTRQ-TTG5-1 Gene

nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 5-1

MRPS31P4 Gene

mitochondrial ribosomal protein S31 pseudogene 4

TIMM44 Gene

translocase of inner mitochondrial membrane 44 homolog (yeast)

This gene encodes a peripheral membrane protein associated with the mitochondrial inner membrane translocase, which functions in the import of proteins across the mitochondrial inner membrane and into the mitochondrial matrix. The encoded protein mediates binding of mitochondrial heat shock protein 70 to the translocase of inner mitochondrial membrane 23 (TIM23) complex. Expression of this gene is upregulated in kidney in a mouse model of diabetes. A mutation in this gene is associated with familial oncocytic thyroid carcinoma. [provided by RefSeq, Jul 2016]

SLC25A3P2 Gene

solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 2

PTPMT1 Gene

protein tyrosine phosphatase, mitochondrial 1

Predicted to enable phosphatidylglycerophosphatase activity and phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity. Involved in regulation of intrinsic apoptotic signaling pathway. Located in nucleus. Is active in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

ATP5C1 Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1

This gene encodes a subunit of mitochondrial ATP synthase. Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. ATP synthase is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, comprising the proton channel. The catalytic portion of mitochondrial ATP synthase consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and a single representative of the other 3. The proton channel consists of three main subunits (a, b, c). This gene encodes the gamma subunit of the catalytic core. Alternatively spliced transcript variants encoding different isoforms have been identified. This gene also has a pseudogene on chromosome 14. [provided by RefSeq, Jul 2008]

MRPS24P1 Gene

mitochondrial ribosomal protein S24 pseudogene 1

LOC100421594 Gene

mitochondrial carrier 2 pseudogene

LOC359819 Gene

mitochondrial ribosomal protein L39 pseudogene

MTCH2 Gene

mitochondrial carrier 2

This gene encodes a member of the SLC25 family of nuclear-encoded transporters that are localized in the inner mitochondrial membrane. Members of this superfamily are involved in many metabolic pathways and cell functions. Genome-wide association studies in human have identified single-nucleotide polymorphisms in several loci associated with obesity. This gene is one such locus, which is highly expressed in white adipose tissue and adipocytes, and thought to play a regulatory role in adipocyte differentiation and biology. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. A recent study showed this gene to be an authentic stop codon readthrough target that can produce two isoforms from the same mRNA by use of alternative in-frame translation termination codons. [provided by RefSeq, Dec 2017]

MTCH1 Gene

mitochondrial carrier 1

This gene encodes a member of the mitochondrial carrier family. The encoded protein is localized to the mitochondrion inner membrane and induces apoptosis independent of the proapoptotic proteins Bax and Bak. Pseudogenes on chromosomes 6 and 11 have been identified for this gene. Alternatively spliced transcript variants encoding multiple isoforms have been observed. [provided by RefSeq, Oct 2012]

MARC1 Gene

mitochondrial amidoxime reducing component 1

Enables molybdenum ion binding activity; molybdopterin cofactor binding activity; and oxidoreductase activity, acting on other nitrogenous compounds as donors. Contributes to nitrite reductase (NO-forming) activity. Involved in cellular detoxification of nitrogen compound; nitrate metabolic process; and nitric oxide biosynthetic process. Located in mitochondrion. Part of nitric-oxide synthase complex. [provided by Alliance of Genome Resources, Mar 2025]

MARC2 Gene

mitochondrial amidoxime reducing component 2

The protein encoded by this gene is an enzyme found in the outer mitochondrial membrane that reduces N-hydroxylated substrates. The encoded protein uses molybdenum as a cofactor and cytochrome b5 type B and NADH cytochrome b5 reductase as accessory proteins. One type of substrate used is N-hydroxylated nucleotide base analogues, which can be toxic to a cell. Other substrates include N(omega)-hydroxy-L-arginine (NOHA) and amidoxime prodrugs, which are activated by the encoded enzyme. Multiple transcript variants encoding the different isoforms have been found for this gene. [provided by RefSeq, Sep 2016]

MIPEPP3 Gene

mitochondrial intermediate peptidase pseudogene 3

MIPEPP1 Gene

mitochondrial intermediate peptidase pseudogene 1

MRPL3P1 Gene

mitochondrial ribosomal protein L3 pseudogene 1

MRPL42P5 Gene

mitochondrial ribosomal protein L42 pseudogene 5

MRPL42P4 Gene

mitochondrial ribosomal protein L42 pseudogene 4

MRPL42P1 Gene

mitochondrial ribosomal protein L42 pseudogene 1

MRPS35P2 Gene

mitochondrial ribosomal protein S35 pseudogene 2

MRPS35P3 Gene

mitochondrial ribosomal protein S35 pseudogene 3

MRPS35P1 Gene

mitochondrial ribosomal protein S35 pseudogene 1

MRPL22P1 Gene

mitochondrial ribosomal protein L22 pseudogene 1

MPC2 Gene

mitochondrial pyruvate carrier 2

Enables identical protein binding activity. Involved in mitochondrial pyruvate transmembrane transport. Located in mitochondrial inner membrane. [provided by Alliance of Genome Resources, Mar 2025]

MPC1 Gene

mitochondrial pyruvate carrier 1

The protein encoded by this gene is part of an MPC1/MPC2 heterodimer that is responsible for transporting pyruvate into mitochondria. The encoded protein is found in the inner mitochondrial membrane. Defects in this gene are a cause of mitochondrial pyruvate carrier deficiency. Several transcript variants, some protein coding and one non-protein coding, have been found for this gene. [provided by RefSeq, Aug 2012]

LOC101929104 Gene

mitochondrial import receptor subunit TOM22 homolog pseudogene

SLC25A37 Gene

solute carrier family 25 (mitochondrial iron transporter), member 37

SLC25A37 is a solute carrier localized in the mitochondrial inner membrane. It functions as an essential iron importer for the synthesis of mitochondrial heme and iron-sulfur clusters (summary by Chen et al., 2009 [PubMed 19805291]).[supplied by OMIM, Jan 2011]

SLC25A31 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31

The protein encoded by this gene is a member of the ADP/ATP carrier family of proteins that exchange cytosolic ADP for matrix ATP in the mitochondria. Cells over-expressing this gene have been shown to display an anti-apoptotic phenotype. This protein is also thought to play a role in spermatogenesis, where it is believed to associate with a part of the flagellar cytoskeleton and with glycolytic enzymes. Male mice with mutations in the mouse ortholog of this gene are sterile and spermatocytes display an early meiotic arrest phenotype. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jan 2016]

SLC25A32 Gene

solute carrier family 25 (mitochondrial folate carrier), member 32

This gene encodes a member of the P(I/L)W subfamily of mitochondrial carrier family transport proteins. The encoded protein transports folate across the inner mitochondrial membrane. Alternatively spliced transcript variants have been described. [provided by RefSeq, Mar 2013]

LOC441996 Gene

aconitase 2, mitochondrial pseudogene

MRPS17 Gene

mitochondrial ribosomal protein S17

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S17P family. The encoded protein is moderately conserved between human mitochondrial and prokaryotic ribosomal proteins. Pseudogenes corresponding to this gene are found on chromosomes 1p, 3p, 6q, 14p, 18q, and Xq. [provided by RefSeq, Jul 2008]

CKMT2 Gene

creatine kinase, mitochondrial 2 (sarcomeric)

Mitochondrial creatine kinase (MtCK) is responsible for the transfer of high energy phosphate from mitochondria to the cytosolic carrier, creatine. It belongs to the creatine kinase isoenzyme family. It exists as two isoenzymes, sarcomeric MtCK and ubiquitous MtCK, encoded by separate genes. Mitochondrial creatine kinase occurs in two different oligomeric forms: dimers and octamers, in contrast to the exclusively dimeric cytosolic creatine kinase isoenzymes. Sarcomeric mitochondrial creatine kinase has 80% homology with the coding exons of ubiquitous mitochondrial creatine kinase. This gene contains sequences homologous to several motifs that are shared among some nuclear genes encoding mitochondrial proteins and thus may be essential for the coordinated activation of these genes during mitochondrial biogenesis. Three transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]

MRPS9 Gene

mitochondrial ribosomal protein S9

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein. [provided by RefSeq, Jul 2008]

MRPS7 Gene

mitochondrial ribosomal protein S7

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein. In the prokaryotic ribosome, the comparable protein is thought to play an essential role in organizing the 3' domain of the 16 S rRNA in the vicinity of the P- and A-sites. Pseudogenes corresponding to this gene are found on chromosomes 8p and 12p. [provided by RefSeq, Jul 2008]

MRPS6 Gene

mitochondrial ribosomal protein S6

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S6P family. Pseudogenes corresponding to this gene are found on chromosomes 1p and 12q. [provided by RefSeq, Jul 2008]

MRPS5 Gene

mitochondrial ribosomal protein S5

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S5P family. Pseudogenes corresponding to this gene are found on chromosomes 4q, 5q, and 18q. [provided by RefSeq, Jul 2008]

MRPS2 Gene

mitochondrial ribosomal protein S2

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S2 family. Alternatively spliced transcript variants have been observed for this gene. [provided by RefSeq, May 2012]

CKMT1A Gene

creatine kinase, mitochondrial 1A

Mitochondrial creatine (MtCK) kinase is responsible for the transfer of high energy phosphate from mitochondria to the cytosolic carrier, creatine. It belongs to the creatine kinase isoenzyme family. It exists as two isoenzymes, sarcomeric MtCK and ubiquitous MtCK, encoded by separate genes. Mitochondrial creatine kinase occurs in two different oligomeric forms: dimers and octamers, in contrast to the exclusively dimeric cytosolic creatine kinase isoenzymes. Many malignant cancers with poor prognosis have shown overexpression of ubiquitous mitochondrial creatine kinase; this may be related to high energy turnover and failure to eliminate cancer cells via apoptosis. Ubiquitous mitochondrial creatine kinase has 80% homology with the coding exons of sarcomeric mitochondrial creatine kinase. Two genes located near each other on chromosome 15 have been identified which encode identical mitochondrial creatine kinase proteins. [provided by RefSeq, Jul 2008]

CKMT1B Gene

creatine kinase, mitochondrial 1B

Mitochondrial creatine (MtCK) kinase is responsible for the transfer of high energy phosphate from mitochondria to the cytosolic carrier, creatine. It belongs to the creatine kinase isoenzyme family. It exists as two isoenzymes, sarcomeric MtCK and ubiquitous MtCK, encoded by separate genes. Mitochondrial creatine kinase occurs in two different oligomeric forms: dimers and octamers, in contrast to the exclusively dimeric cytosolic creatine kinase isoenzymes. Many malignant cancers with poor prognosis have shown overexpression of ubiquitous mitochondrial creatine kinase; this may be related to high energy turnover and failure to eliminate cancer cells via apoptosis. Ubiquitous mitochondrial creatine kinase has 80% homology with the coding exons of sarcomeric mitochondrial creatine kinase. Two genes located near each other on chromosome 15 have been identified which encode identical mitochondrial creatine kinase proteins. [provided by RefSeq, Jul 2008]

NADK2 Gene

NAD kinase 2, mitochondrial

This gene encodes a mitochondrial kinase that catalyzes the phosphorylation of NAD to yield NADP. Mutations in this gene result in 2,4-dienoyl-CoA reductase deficiency. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2014]

CA5B Gene

carbonic anhydrase VB, mitochondrial

Carbonic anhydrases (CAs) are a large family of zinc metalloenzymes that catalyze the reversible hydration of carbon dioxide. They participate in a variety of biological processes, including respiration, calcification, acid-base balance, bone resorption, and the formation of aqueous humor, cerebrospinal fluid, saliva, and gastric acid. They show extensive diversity in tissue distribution and in their subcellular localization. This gene encodes carbonic anhydrase 5B. CA5B, and the related CA5A gene, has its expression localized in the mitochondria though CA5B has a wider tissue distribution than CA5A, which is restricted to the liver, kidneys, and skeletal muscle. A carbonic anhydrase pseudogene (CA5BP1) is adjacent to the CA5B gene and these two loci produce CA5BP1-CA5B readthrough transcripts. [provided by RefSeq, Jan 2019]

CA5A Gene

carbonic anhydrase VA, mitochondrial

Carbonic anhydrases (CAs) are a large family of zinc metalloenzymes that catalyze the reversible hydration of carbon dioxide. They participate in a variety of biological processes, including respiration, calcification, acid-base balance, bone resorption, and the formation of aqueous humor, cerebrospinal fluid, saliva, and gastric acid. They show extensive diversity in tissue distribution and in their subcellular localization. CA VA is localized in the mitochondria and expressed primarily in the liver. It may play an important role in ureagenesis and gluconeogenesis. CA5A gene maps to chromosome 16q24.3 and an unprocessed pseudogene has been assigned to 16p12-p11.2. [provided by RefSeq, Jul 2008]

SLC25A5P2 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 2

SLC25A5P4 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 4

SLC25A5P7 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 7

ATP5L2 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G2

Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in proton motive force-driven ATP synthesis. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

MARS2 Gene

methionyl-tRNA synthetase 2, mitochondrial

This gene produces a mitochondrial methionyl-tRNA synthetase protein that is encoded by the nuclear genome and imported to the mitochondrion. This protein likely functions as a monomer and is predicted to localize to the mitochondrial matrix. Mutations in this gene are associated with the autosomal recessive neurodegenerative disease spastic ataxia-3 (SPAX3). [provided by RefSeq, Apr 2014]

LOC100128523 Gene

mitochondrial carrier 2 pseudogene

MRPS31P2 Gene

mitochondrial ribosomal protein S31 pseudogene 2

MRPS31P1 Gene

mitochondrial ribosomal protein S31 pseudogene 1

MRPS31P5 Gene

mitochondrial ribosomal protein S31 pseudogene 5

IARS2P1 Gene

isoleucyl-tRNA synthetase 2, mitochondrial pseudogene 1

SOD2P1 Gene

superoxide dismutase 2, mitochondrial pseudogene 1

LOC100127892 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene

LOC100420251 Gene

mitochondrial fission factor pseudogene

MRPS10P1 Gene

mitochondrial ribosomal protein S10 pseudogene 1

MRPS10P2 Gene

mitochondrial ribosomal protein S10 pseudogene 2

MRPS10P5 Gene

mitochondrial ribosomal protein S10 pseudogene 5

GFM1 Gene

G elongation factor, mitochondrial 1

Eukaryotes contain two protein translational systems, one in the cytoplasm and one in the mitochondria. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. This gene encodes one of the mitochondrial translation elongation factors. Its role in the regulation of normal mitochondrial function and in different disease states attributed to mitochondrial dysfunction is not known. [provided by RefSeq, Jul 2008]

GFM2 Gene

G elongation factor, mitochondrial 2

Eukaryotes contain two protein translational systems, one in the cytoplasm and one in the mitochondria. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. This gene encodes one of the mitochondrial translation elongation factors, which is a GTPase that plays a role at the termination of mitochondrial translation by mediating the disassembly of ribosomes from messenger RNA . Its role in the regulation of normal mitochondrial function and in disease states attributed to mitochondrial dysfunction is not known. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2013]

TEFM Gene

transcription elongation factor, mitochondrial

Enables DNA polymerase processivity factor activity. Involved in mitochondrial transcription and oxidative phosphorylation. Located in mitochondrial nucleoid. Part of ribonucleoprotein complex. Implicated in combined oxidative phosphorylation deficiency. [provided by Alliance of Genome Resources, Mar 2025]

LOC100132621 Gene

mitochondrial fission regulator 2 pseudogene

MRPL10 Gene

mitochondrial ribosomal protein L10

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Sequence analysis identified three transcript variants that encode two different isoforms. A pseudogene corresponding to this gene is found on chromosome 5q. [provided by RefSeq, Nov 2010]

MRPL11 Gene

mitochondrial ribosomal protein L11

This nuclear gene encodes a 39S subunit component of the mitochondial ribosome. Alternative splicing results in multiple transcript variants. Pseudogenes for this gene are found on chromosomes 5 and 12. [provided by RefSeq, May 2014]

MRPL12 Gene

mitochondrial ribosomal protein L12

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein which forms homodimers. In prokaryotic ribosomes, two L7/L12 dimers and one L10 protein form the L8 protein complex. [provided by RefSeq, Jul 2008]

MRPL13 Gene

mitochondrial ribosomal protein L13

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. [provided by RefSeq, Jul 2008]

MRPL14 Gene

mitochondrial ribosomal protein L14

This nuclear gene encodes a protein component of the 39S subunit of the mitochondrial ribosome. A pseudogene of this gene is found on chromosome 17. [provided by RefSeq, Jan 2016]

MRPL15 Gene

mitochondrial ribosomal protein L15

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein that belongs to the EcoL15 ribosomal protein family. A pseudogene corresponding to this gene is found on chromosome 15q. [provided by RefSeq, Jul 2008]

MRPL16 Gene

mitochondrial ribosomal protein L16

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. [provided by RefSeq, Jul 2008]

MRPL17 Gene

mitochondrial ribosomal protein L17

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. [provided by RefSeq, Jul 2008]

MRPL18 Gene

mitochondrial ribosomal protein L18

This nuclear gene encodes a protein component of the larger 39S subunit of mitochondrial ribosome. This protein may also aid in the import of nuclear-encoded 5S rRNA into mitochondria. Alternative splicing results in multiple transcript variants, most of which are not predicted to encode a protein. A pseudogene of this gene is found on chromosome 16. [provided by RefSeq, Jan 2016]

MRPL19 Gene

mitochondrial ribosomal protein L19

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. [provided by RefSeq, Jul 2008]

LOC729057 Gene

translocase of outer mitochondrial membrane 40 homolog (yeast) pseudogene

LOC388955 Gene

PRELI domain-containing protein 1, mitochondrial pseudogene

TIMM8BP1 Gene

translocase of inner mitochondrial membrane 8B pseudogene 1

IMMP2L Gene

IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)

This gene encodes a protein involved in processing the signal peptide sequences used to direct mitochondrial proteins to the mitochondria. The encoded protein resides in the mitochondria and is one of the necessary proteins for the catalytic activity of the mitochondrial inner membrane peptidase (IMP) complex. Two variants that encode the same protein have been described for this gene. [provided by RefSeq, Sep 2011]

SOD2 Gene

superoxide dismutase 2, mitochondrial

This gene is a member of the iron/manganese superoxide dismutase family. It encodes a mitochondrial protein that forms a homotetramer and binds one manganese ion per subunit. This protein binds to the superoxide byproducts of oxidative phosphorylation and converts them to hydrogen peroxide and diatomic oxygen. Mutations in this gene have been associated with idiopathic cardiomyopathy (IDC), premature aging, sporadic motor neuron disease, and cancer. Alternative splicing of this gene results in multiple transcript variants. A related pseudogene has been identified on chromosome 1. [provided by RefSeq, Apr 2016]

CARS2 Gene

cysteinyl-tRNA synthetase 2, mitochondrial (putative)

This gene encodes a putative member of the class I family of aminoacyl-tRNA synthetases. These enzymes play a critical role in protein biosynthesis by charging tRNAs with their cognate amino acids. This protein is encoded by the nuclear genome but is likely to be imported to the mitochondrion where it is thought to catalyze the ligation of cysteine to tRNA molecules. A splice-site mutation in this gene has been associated with a novel progressive myoclonic epilepsy disease with similar symptoms to MERRF syndrome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2017]

HSCB Gene

HscB mitochondrial iron-sulfur cluster co-chaperone

This gene encodes a DnaJ-type co-chaperone and member of the heat shock cognate B (HscB) family of proteins. The encoded protein plays a role in the synthesis of iron-sulfur clusters, protein cofactors that are involved in the redox reactions of mitochondrial electron transport and other processes. Cells in which this gene is knocked down exhibit reduced activity of iron-sulfur cluster-dependent enzymes including succinate dehydrogenase and aconitase. The encoded protein may stimulate the ATPase activity of the mitochondrial stress-70 protein. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2015]

MCCD1 Gene

mitochondrial coiled-coil domain 1

Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

MRPS36P4 Gene

mitochondrial ribosomal protein S36 pseudogene 4

MRPS36P6 Gene

mitochondrial ribosomal protein S36 pseudogene 6

MRPS36P3 Gene

mitochondrial ribosomal protein S36 pseudogene 3

MRPS36P2 Gene

mitochondrial ribosomal protein S36 pseudogene 2

LOC100289091 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G2 pseudogene

PMPCAP1 Gene

peptidase (mitochondrial processing) alpha pseudogene 1

VARS2 Gene

valyl-tRNA synthetase 2, mitochondrial

This gene encodes a mitochondrial aminoacyl-tRNA synthetase, which catalyzes the attachment of valine to tRNA(Val) for mitochondrial translation. Mutations in this gene cause combined oxidative phosphorylation deficiency-20, and are also associated with early-onset mitochondrial encephalopathies. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Aug 2014]

ATP5BP1 Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide pseudogene 1

SLC25A3P3 Gene

solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene

SLC25A3P1 Gene

solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

MRPL11P3 Gene

mitochondrial ribosomal protein L11 pseudogene 3

MRPL11P2 Gene

mitochondrial ribosomal protein L11 pseudogene 2

MRPL45P1 Gene

mitochondrial ribosomal protein L45 pseudogene 1

MRPL45P2 Gene

mitochondrial ribosomal protein L45 pseudogene 2

LOC101929583 Gene

monofunctional C1-tetrahydrofolate synthase, mitochondrial-like

LOC100289118 Gene

mitochondrial carrier 2 pseudogene

MRPS16 Gene

mitochondrial ribosomal protein S16

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S16P family. The encoded protein is one of the most highly conserved ribosomal proteins between mammalian and yeast mitochondria. Three pseudogenes (located at 8q21.3, 20q13.32, 22q12-q13.1) for this gene have been described. [provided by RefSeq, Jul 2008]

MRPS15 Gene

mitochondrial ribosomal protein S15

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S15P family. The encoded protein is more than two times the size of its E. coli counterpart, with the 12S rRNA binding sites conserved. Between human and mouse, the encoded protein is the least conserved among small subunit ribosomal proteins. Pseudogenes corresponding to this gene are found on chromosomes 15q and 19q. [provided by RefSeq, Jul 2008]

MRPS14 Gene

mitochondrial ribosomal protein S14

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S14P family. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2010]

MRPS12 Gene

mitochondrial ribosomal protein S12

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S12P family. The encoded protein is a key component of the ribosomal small subunit and controls the decoding fidelity and susceptibility to aminoglycoside antibiotics. The gene for mitochondrial seryl-tRNA synthetase is located upstream and adjacent to this gene, and both genes are possible candidates for the autosomal dominant deafness gene (DFNA4). Splice variants that differ in the 5' UTR have been found for this gene; all three variants encode the same protein. [provided by RefSeq, Jul 2008]

MRPS11 Gene

mitochondrial ribosomal protein S11

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that contains a high level of sequence similarity with ribosomal protein S11P family members. A pseudogene corresponding to this gene is found on chromosome 20. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2016]

MRPS10 Gene

mitochondrial ribosomal protein S10

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S10P family. Pseudogenes corresponding to this gene are found on chromosomes 1q, 3p, and 9p. [provided by RefSeq, Jul 2008]

SLC25A5P8 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 8

SLC25A5P9 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 9

SLC25A5P1 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 1

SLC25A5P3 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 3

LOC100128171 Gene

mitochondrial fission regulator 1 pseudogene

TIMM17BP1 Gene

translocase of inner mitochondrial membrane 17 homolog B (yeast) pseudogene 1

LOC100131471 Gene

presenilins-associated rhomboid-like protein, mitochondrial-like

MTIF3 Gene

mitochondrial translational initiation factor 3

This gene encodes a translation initiation factor that is involved in mitochondrial protein synthesis. Polymorphism in this gene is associated with the onset of Parkinson's disease. Alternate splicing results in multiple transcript variants. A pseudogene of this gene is found on chromosome 5. [provided by RefSeq, Oct 2009]

MTIF2 Gene

mitochondrial translational initiation factor 2

During the initiation of protein biosynthesis, initiation factor-2 (IF-2) promotes the binding of the initiator tRNA to the small subunit of the ribosome in a GTP-dependent manner. Prokaryotic IF-2 is a single polypeptide, while eukaryotic cytoplasmic IF-2 (eIF-2) is a trimeric protein. Bovine liver mitochondria contain IF-2(mt), an 85-kD monomeric protein that is equivalent to prokaryotic IF-2. The predicted 727-amino acid human protein contains a 29-amino acid presequence. Human IF-2(mt) shares 32 to 38% amino acid sequence identity with yeast IF-2(mt) and several prokaryotic IF-2s, with the greatest degree of conservation in the G domains of the proteins. [provided by RefSeq, Mar 2016]

MTPAP Gene

mitochondrial poly(A) polymerase

The protein encoded by this gene is a member of the DNA polymerase type-B-like family. This enzyme synthesizes the 3' poly(A) tail of mitochondrial transcripts and plays a role in replication-dependent histone mRNA degradation.[provided by RefSeq, Jan 2011]

HMGCS2 Gene

3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial)

The protein encoded by this gene belongs to the HMG-CoA synthase family. It is a mitochondrial enzyme that catalyzes the first reaction of ketogenesis, a metabolic pathway that provides lipid-derived energy for various organs during times of carbohydrate deprivation, such as fasting. Mutations in this gene are associated with HMG-CoA synthase deficiency. Alternatively spliced transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Oct 2009]

MMDFS Gene

Multiple mitochondrial dysfunctions syndrome

SLC25A14P1 Gene

solute carrier family 25 (mitochondrial carrier, brain), member 14 pseudogene 1

ACO2 Gene

aconitase 2, mitochondrial

The protein encoded by this gene belongs to the aconitase/IPM isomerase family. It is an enzyme that catalyzes the interconversion of citrate to isocitrate via cis-aconitate in the second step of the TCA cycle. This protein is encoded in the nucleus and functions in the mitochondrion. It was found to be one of the mitochondrial matrix proteins that are preferentially degraded by the serine protease 15(PRSS15), also known as Lon protease, after oxidative modification. [provided by RefSeq, Jul 2008]

MIEF1 Gene

mitochondrial elongation factor 1

Enables identical protein binding activity; mitochondrial large ribosomal subunit binding activity; and purine ribonucleotide binding activity. Involved in several processes, including mitochondrial large ribosomal subunit assembly; mitochondrion organization; and regulation of mitochondrion organization. Located in mitochondrial matrix and mitochondrial outer membrane. Implicated in optic atrophy. [provided by Alliance of Genome Resources, Mar 2025]

MIEF2 Gene

mitochondrial elongation factor 2

This gene encodes an outer mitochondrial membrane protein that functions in the regulation of mitochondrial morphology. It can directly recruit the fission mediator dynamin-related protein 1 (Drp1) to the mitochondrial surface. The gene is located within the Smith-Magenis syndrome region on chromosome 17. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jun 2011]

MCAT Gene

malonyl CoA:ACP acyltransferase (mitochondrial)

The protein encoded by this gene is found exclusively in the mitochondrion, where it catalyzes the transfer of a malonyl group from malonyl-CoA to the mitochondrial acyl carrier protein. The encoded protein may be part of a fatty acid synthase complex that is more like the type II prokaryotic and plastid complexes rather than the type I human cytosolic complex. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Mar 2012]

MRPL42P3 Gene

mitochondrial ribosomal protein L42 pseudogene 3

MRPL42P2 Gene

mitochondrial ribosomal protein L42 pseudogene 2

OXSM Gene

3-oxoacyl-ACP synthase, mitochondrial

This gene encodes a beta-ketoacyl synthetase. The encoded enzyme is required for elongation of fatty acid chains in the mitochondria. Alternatively spliced transcript variants have been described.[provided by RefSeq, Feb 2009]

MRPS18A Gene

mitochondrial ribosomal protein S18A

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S18P family. The encoded protein is one of three that has significant sequence similarity to bacterial S18 proteins. The primary sequences of the three human mitochondrial S18 proteins are no more closely related to each other than they are to the prokaryotic S18 proteins. A pseudogene corresponding to this gene is found on chromosome 3p. Alternative splicing results in multiple transcript variants.[provided by RefSeq, Jul 2010]

MRPS18B Gene

mitochondrial ribosomal protein S18B

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S18P family. The encoded protein is one of three that has significant sequence similarity to bacterial S18 proteins. The primary sequences of the three human mitochondrial S18 proteins are no more closely related to each other than they are to the prokaryotic S18 proteins. Pseudogenes corresponding to this gene are found on chromosomes 1q and 2q. [provided by RefSeq, Jul 2008]

MRPS18C Gene

mitochondrial ribosomal protein S18C

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S18P family. The encoded protein is one of three that has significant sequence similarity to bacterial S18 proteins. The primary sequences of the three human mitochondrial S18 proteins are no more closely related to each other than they are to the prokaryotic S18 proteins. Pseudogenes corresponding to this gene are found on chromosomes 8p, 12p, 15q, and 22q. [provided by RefSeq, Jul 2008]

MRPL14P1 Gene

mitochondrial ribosomal protein L14 pseudogene 1

ATP5J2LP Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2-like pseudogene

MRPS7P2 Gene

mitochondrial ribosomal protein S7 pseudogene 2

MRPS7P1 Gene

mitochondrial ribosomal protein S7 pseudogene 1

FIS1 Gene

fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae)

Enables identical protein binding activity; lipid binding activity; and molecular adaptor activity. Involved in several processes, including negative regulation of ATP metabolic process; negative regulation of fatty acid transport; and organelle fission. Acts upstream of or within mitochondrion organization. Located in mitochondrial outer membrane and peroxisomal membrane. Part of protein-containing complex. Biomarker of Alzheimer's disease. [provided by Alliance of Genome Resources, Mar 2025]

LOC260339 Gene

transcription factor A, mitochondrial pseudogene

MTRF1 Gene

mitochondrial translational release factor 1

The protein encoded by this gene was determined by in silico methods to be a mitochondrial protein with similarity to the peptide chain release factors (RFs) discovered in bacteria and yeast. The peptide chain release factors direct the termination of translation in response to the peptide chain termination codons. Initially thought to have a role in the termination of mitochondria protein synthesis, a recent publication found no mitochondrial translation release functionality. Multiple alternatively spliced transcript variants have been suggested by mRNA and EST data; however, their full-length natures are not clear. [provided by RefSeq, Jul 2008]

MTFR1 Gene

mitochondrial fission regulator 1

This gene encodes a mitochondrial protein that is characterized by a poly-proline rich region. A chicken homolog of this protein promotes mitochondrial fission and the mouse homolog protects cells from oxidative stress. A related pseudogene of this gene is found on chromosome X. [provided by RefSeq, Mar 2009]

MTFR2 Gene

mitochondrial fission regulator 2

Predicted to be involved in aerobic respiration and mitochondrial fission. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

LOC100288416 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene

LOC100128454 Gene

39S ribosomal protein L32, mitochondrial pseudogene

MPV17L Gene

MPV17 mitochondrial membrane protein-like

Involved in negative regulation of hydrogen peroxide biosynthetic process; negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway; and reactive oxygen species metabolic process. Located in peroxisome. [provided by Alliance of Genome Resources, Mar 2025]

MPV17L2 Gene

MPV17 mitochondrial membrane protein-like 2

Involved in mitochondrial ribosome assembly and positive regulation of mitochondrial translation. Located in mitochondrial inner membrane. Part of mitochondrial large ribosomal subunit. [provided by Alliance of Genome Resources, Mar 2025]

LOC645324 Gene

GrpE-like 1, mitochondrial (E. coli) pseudogene

LOC100736408 Gene

NAD kinase 2, mitochondrial pseudogene

LOC100509370 Gene

39S ribosomal protein L21, mitochondrial pseudogene

LOC101928296 Gene

ATP synthase-coupling factor 6, mitochondrial-like

TOMM40 Gene

translocase of outer mitochondrial membrane 40 homolog (yeast)

The protein encoded by this gene is localized in the outer membrane of the mitochondria. It is the channel-forming subunit of the translocase of the mitochondrial outer membrane (TOM) complex that is essential for import of protein precursors into mitochondria. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Aug 2015]

TFB2M Gene

transcription factor B2, mitochondrial

Enables mitochondrial transcription factor activity. Involved in transcription initiation at mitochondrial promoter. Located in mitochondrial nucleoid. [provided by Alliance of Genome Resources, Mar 2025]

MGME1 Gene

mitochondrial genome maintenance exonuclease 1

The protein encoded by this gene is a nuclear-encoded mitochondrial protein necessary for the maintenance of mitochondrial genome synthesis. The encoded protein is a RecB-type exonuclease and primarily cleaves single-stranded DNA. Defects in this gene have been associated with mitochondrial DNA depletion syndrome-11. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2015]

MRPL51P2 Gene

mitochondrial ribosomal protein L51 pseudogene 2

MRPL51P1 Gene

mitochondrial ribosomal protein L51 pseudogene 1

TARS2 Gene

threonyl-tRNA synthetase 2, mitochondrial (putative)

This gene encodes a member of the class-II aminoacyl-tRNA synthetase family. The encoded protein is a mitochondrial aminoacyl-tRNA synthetase. Alternative splicing results in multiple transcript variants. A related pseudogene has been identified on chromosome 4. [provided by RefSeq, Dec 2012]

LOC343508 Gene

aconitase 2, mitochondrial pseudogene

MRPS23P1 Gene

mitochondrial ribosomal protein S23 pseudogene 1

ME2P1 Gene

malic enzyme 2, NAD(+)-dependent, mitochondrial pseudogene 1

ATP5JP1 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 pseudogene 1

ATP5A1 Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle

This gene encodes a subunit of mitochondrial ATP synthase. Mitochondrial ATP synthase catalyzes ATP synthesis, using an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. ATP synthase is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, comprising the proton channel. The catalytic portion of mitochondrial ATP synthase consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and a single representative of the other 3. The proton channel consists of three main subunits (a, b, c). This gene encodes the alpha subunit of the catalytic core. Alternatively spliced transcript variants encoding the different isoforms have been identified. Pseudogenes of this gene are located on chromosomes 9, 2, and 16. [provided by RefSeq, Mar 2012]

LOC105369446 Gene

mitochondrial import receptor subunit TOM20 homolog pseudogene

MRPS18AP1 Gene

mitochondrial ribosomal protein S18A pseudogene 1

MRPL39 Gene

mitochondrial ribosomal protein L39

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Two transcript variants encoding distinct isoforms have been described. A pseudogene corresponding to this gene is found on chromosome 5q. [provided by RefSeq, Jul 2008]

LOC102724738 Gene

tricarboxylate transport protein, mitochondrial pseudogene

MRPL43 Gene

mitochondrial ribosomal protein L43

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. This gene and the gene for a semaphorin class 4 protein (SEMA4G) overlap at map location 10q24.31 and are transcribed in opposite directions. Sequence analysis identified multiple transcript variants encoding at least four different protein isoforms. [provided by RefSeq, Jul 2008]

MRPL42 Gene

mitochondrial ribosomal protein L42

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a protein identified as belonging to both the 28S and the 39S subunits. Alternative splicing results in multiple transcript variants. Pseudogenes corresponding to this gene are found on chromosomes 4q, 6p, 6q, 7p, and 15q. [provided by RefSeq, May 2011]

MRPL40 Gene

mitochondrial ribosomal protein L40

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Deletions in this gene may contribute to the etiology of velo-cardio-facial syndrome and DiGeorge syndrome. [provided by RefSeq, Jul 2008]

MRPL47 Gene

mitochondrial ribosomal protein L47

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. This gene is immediately adjacent to the gene for BAF complex 53 kDa subunit protein a (BAF53a), in a tail-to-tail orientation. Two transcript variants encoding different protein isoforms have been identified. [provided by RefSeq, Jul 2008]

MRPL46 Gene

mitochondrial ribosomal protein L46

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. [provided by RefSeq, Jul 2008]

MRPL44 Gene

mitochondrial ribosomal protein L44

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. [provided by RefSeq, Jul 2008]

MRPL49 Gene

mitochondrial ribosomal protein L49

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. Pseudogenes corresponding to this gene are found on chromosomes 5q and 8p. [provided by RefSeq, May 2011]

MRPL48 Gene

mitochondrial ribosomal protein L48

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. A pseudogene corresponding to this gene is found on chromosome 6p. Several transcript variants, some protein-coding and some non-protein coding, have been found for this gene. [provided by RefSeq, Jan 2016]

ATP5J2P6 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 6

ATP5J2P4 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 4

ATP5J2P5 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 5

ATP5J2P2 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 2

ATP5J2P3 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 3

MPC1L Gene

mitochondrial pyruvate carrier 1-like

Predicted to enable pyruvate transmembrane transporter activity. Involved in mitochondrial pyruvate transmembrane transport. Located in mitochondrial inner membrane. [provided by Alliance of Genome Resources, Mar 2025]

MRPS28 Gene

mitochondrial ribosomal protein S28

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that has been called mitochondrial ribosomal protein S35 in the literature. [provided by RefSeq, Jul 2008]

MRPS26 Gene

mitochondrial ribosomal protein S26

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein. This gene lies adjacent to and downstream of the gonadotropin-releasing hormone precursor gene. [provided by RefSeq, Jul 2008]

MRPS27 Gene

mitochondrial ribosomal protein S27

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that may be a functional partner of the death associated protein 3 (DAP3). Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Nov 2013]

MRPS24 Gene

mitochondrial ribosomal protein S24

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein. A pseudogene corresponding to this gene is found on chromosome 11. Read-through transcription exists between this gene and the upstream upregulator of cell proliferation (URGCP) gene. [provided by RefSeq, Mar 2011]

MRPS25 Gene

mitochondrial ribosomal protein S25

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein. A pseudogene corresponding to this gene is found on chromosome 4. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2016]

MRPS22 Gene

mitochondrial ribosomal protein S22

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that does not seem to have a counterpart in prokaryotic and fungal-mitochondrial ribosomes. This gene lies telomeric of and is transcribed in the opposite direction from the forkhead box L2 gene. A pseudogene corresponding to this gene is found on chromosome Xq. [provided by RefSeq, Jul 2008]

MRPS23 Gene

mitochondrial ribosomal protein S23

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein. A pseudogene corresponding to this gene is found on chromosome 7p. [provided by RefSeq, Jul 2008]

MRPS21 Gene

mitochondrial ribosomal protein S21

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S21P family. Pseudogenes corresponding to this gene are found on chromosomes 1p, 1q, 9p, 10p, 10q, 16q, and 17q. Available sequence data analyses identified splice variants that differ in the 5' UTR; both transcripts encode the same protein. [provided by RefSeq, Jul 2008]

ATP5S Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)

This gene encodes a subunit of mitochondrial ATP synthase. Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. ATP synthase is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, comprising the proton channel. This gene encodes the subunit s, also known as factor B, of the proton channel. This subunit is necessary for the energy transduction activity of the ATP synthase complexes. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]

ATP5J Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6

Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. It is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, which comprises the proton channel. The F1 complex consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled in a ratio of 3 alpha, 3 beta, and a single representative of the other 3. The Fo complex has nine subunits (a, b, c, d, e, f, g, F6 and 8). This gene encodes the F6 subunit of the Fo complex. The F6 subunit is required for F1 and Fo interactions. Alternatively spliced transcript variants encoding different isoforms have been identified for this gene. This gene has 1 or more pseudogenes. [provided by RefSeq, Feb 2016]

ATP5I Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit E

Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. It is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, which comprises the proton channel. The F1 complex consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled in a ratio of 3 alpha, 3 beta, and a single representative of the other 3. The Fo seems to have nine subunits (a, b, c, d, e, f, g, F6 and 8). This gene encodes the e subunit of the Fo complex. Alternative splicing results in multiple transcript variants.[provided by RefSeq, Jun 2010]

ATP5H Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d

Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. It is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, which comprises the proton channel. The F1 complex consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled in a ratio of 3 alpha, 3 beta, and a single representative of the other 3. The Fo seems to have nine subunits (a, b, c, d, e, f, g, F6 and 8). This gene encodes the d subunit of the Fo complex. Alternatively spliced transcript variants encoding different isoforms have been identified for this gene. In addition, three pseudogenes are located on chromosomes 9, 12 and 15. [provided by RefSeq, Jun 2010]

ATP5O Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit

The protein encoded by this gene is a component of the F-type ATPase found in the mitochondrial matrix. F-type ATPases are composed of a catalytic core and a membrane proton channel. The encoded protein appears to be part of the connector linking these two components and may be involved in transmission of conformational changes or proton conductance. [provided by RefSeq, Jul 2008]

ME3 Gene

malic enzyme 3, NADP(+)-dependent, mitochondrial

Malic enzyme catalyzes the oxidative decarboxylation of malate to pyruvate using either NAD+ or NADP+ as a cofactor. Mammalian tissues contain 3 distinct isoforms of malic enzyme: a cytosolic NADP(+)-dependent isoform, a mitochondrial NADP(+)-dependent isoform, and a mitochondrial NAD(+)-dependent isoform. This gene encodes a mitochondrial NADP(+)-dependent isoform. Multiple alternatively spliced transcript variants have been found for this gene, but the biological validity of some variants has not been determined. [provided by RefSeq, Jul 2008]

ME2 Gene

malic enzyme 2, NAD(+)-dependent, mitochondrial

This gene encodes a mitochondrial NAD-dependent malic enzyme, a homotetrameric protein, that catalyzes the oxidative decarboxylation of malate to pyruvate. It had previously been weakly linked to a syndrome known as Friedreich ataxia that has since been shown to be the result of mutation in a completely different gene. Certain single-nucleotide polymorphism haplotypes of this gene have been shown to increase the risk for idiopathic generalized epilepsy. Alternatively spliced transcript variants encoding different isoforms found for this gene. [provided by RefSeq, Dec 2009]

ATP5B Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide

This gene encodes a subunit of mitochondrial ATP synthase. Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. ATP synthase is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, comprising the proton channel. The catalytic portion of mitochondrial ATP synthase consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and a single representative of the other 3. The proton channel consists of three main subunits (a, b, c). This gene encodes the beta subunit of the catalytic core. [provided by RefSeq, Jul 2008]

ATP5E Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit

This gene encodes a subunit of mitochondrial ATP synthase. Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. ATP synthase is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, comprising the proton channel. The catalytic portion of mitochondrial ATP synthase consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and a single representative of the other 3. The proton channel consists of three main subunits (a, b, c). This gene encodes the epsilon subunit of the catalytic core. Two pseudogenes of this gene are located on chromosomes 4 and 13. Read-through transcripts that include exons from this gene are expressed from the upstream gene SLMO2.[provided by RefSeq, Mar 2011]

ATP5D Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit

This gene encodes a subunit of mitochondrial ATP synthase. Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. ATP synthase is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, comprising the proton channel. The catalytic portion of mitochondrial ATP synthase consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and a single representative of the other 3. The proton channel consists of three main subunits (a, b, c). This gene encodes the delta subunit of the catalytic core. Alternatively spliced transcript variants encoding the same isoform have been identified. [provided by RefSeq, Jul 2008]

CLPX Gene

caseinolytic mitochondrial matrix peptidase chaperone subunit

The protein encoded by this gene is part of a protease found in mitochondria. This protease is ATP-dependent and targets specific proteins for degradation. The protease consists of two heptameric rings of the CLPP catalytic subunit sandwiched between two hexameric rings of the chaperone subunit encoded by this gene. Targeted proteins are unwound by this protein and then passed on to the CLPP subunit for degradation. Two transcript variants, one protein-coding and the other non-protein coding, have been found for this gene. [provided by RefSeq, Nov 2015]

CLPP Gene

caseinolytic mitochondrial matrix peptidase proteolytic subunit

The protein encoded by this gene belongs to the peptidase family S14 and hydrolyzes proteins into small peptides in the presence of ATP and magnesium. The protein is transported into mitochondrial matrix and is associated with the inner mitochondrial membrane. [provided by RefSeq, Jul 2008]

CLPB Gene

ClpB homolog, mitochondrial AAA ATPase chaperonin

This gene belongs to the ATP-ases associated with diverse cellular activities (AAA+) superfamily. Members of this superfamily form ring-shaped homo-hexamers and have highly conserved ATPase domains that are involved in various processes including DNA replication, protein degradation and reactivation of misfolded proteins. All members of this family hydrolyze ATP through their AAA+ domains and use the energy generated through ATP hydrolysis to exert mechanical force on their substrates. In addition to an AAA+ domain, the protein encoded by this gene contains a C-terminal D2 domain, which is characteristic of the AAA+ subfamily of Caseinolytic peptidases to which this protein belongs. It cooperates with Hsp70 in the disaggregation of protein aggregates. Allelic variants of this gene are associated with 3-methylglutaconic aciduria, which causes cataracts and neutropenia. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2015]

LOC100996643 Gene

monofunctional C1-tetrahydrofolate synthase, mitochondrial-like

LOC100421472 Gene

mitochondrial fission regulator 2 pseudogene

DIABLO Gene

diablo, IAP-binding mitochondrial protein

This gene encodes an inhibitor of apoptosis protein (IAP)-binding protein. The encoded mitochondrial protein enters the cytosol when cells undergo apoptosis, and allows activation of caspases by binding to inhibitor of apoptosis proteins. Overexpression of the encoded protein sensitizes tumor cells to apoptosis. A mutation in this gene is associated with young-adult onset of nonsyndromic deafness-64. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, May 2013]

MTO1 Gene

mitochondrial tRNA translation optimization 1

This gene encodes a mitochondrial protein thought to be involved in mitochondrial tRNA modification. The encoded protein may also play a role in the expression of the non-syndromic and aminoglycoside-induced deafness phenotypes associated with a specific mutation in the mitochondrial 12S rRNA gene. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

LOC100132849 Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit pseudogene

MPV17 Gene

MpV17 mitochondrial inner membrane protein

This gene encodes a mitochondrial inner membrane protein that is implicated in the metabolism of reactive oxygen species. Mutations in this gene have been associated with the hepatocerebral form of mitochondrial DNA depletion syndrome (MDDS). [provided by RefSeq, Jul 2008]

GPAM Gene

glycerol-3-phosphate acyltransferase, mitochondrial

This gene encodes a mitochondrial enzyme which prefers saturated fatty acids as its substrate for the synthesis of glycerolipids. This metabolic pathway's first step is catalyzed by the encoded enzyme. Two forms for this enzyme exist, one in the mitochondria and one in the endoplasmic reticulum. Two alternatively spliced transcript variants have been described for this gene. [provided by RefSeq, Oct 2011]

LOC102724580 Gene

monofunctional C1-tetrahydrofolate synthase, mitochondrial-like

ATP5C1P1 Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 pseudogene 1

TFAMP2 Gene

transcription factor A, mitochondrial pseudogene 2

TFAMP1 Gene

transcription factor A, mitochondrial pseudogene 1

MECR Gene

mitochondrial trans-2-enoyl-CoA reductase

The protein encoded by this gene is an oxidoreductase that catalyzes the last step in mitochondrial fatty acid synthesis. Defects in this gene are a cause of childhood-onset dystonia and optic atrophy. [provided by RefSeq, Mar 2017]

LOC100507083 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene

LOC102724828 Gene

39S ribosomal protein L23, mitochondrial-like

LOC101929091 Gene

enoyl-CoA hydratase domain-containing protein 2, mitochondrial pseudogene

MTG2 Gene

mitochondrial ribosome-associated GTPase 2

Small G proteins, such as GTPBP5, act as molecular switches that play crucial roles in the regulation of fundamental cellular processes such as protein synthesis, nuclear transport, membrane trafficking, and signal transduction (Hirano et al., 2006 [PubMed 17054726]).[supplied by OMIM, Mar 2008]

MTG1 Gene

mitochondrial ribosome-associated GTPase 1

Enables GTPase activity. Involved in regulation of mitochondrial translation and regulation of respiratory system process. Located in mitochondrial inner membrane; mitochondrial ribosome; and nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

MRPS6P2 Gene

mitochondrial ribosomal protein S6 pseudogene 2

MRPS6P1 Gene

mitochondrial ribosomal protein S6 pseudogene 1

MRPS6P4 Gene

mitochondrial ribosomal protein S6 pseudogene 4

CMPK2 Gene

cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial

This gene encodes one of the enzymes in the nucleotide synthesis salvage pathway that may participate in terminal differentiation of monocytic cells. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2012]

ATP5J2 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2

Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. It is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, which comprises the proton channel. The catalytic portion of mitochondrial ATP synthase consists of five different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and single representatives of the gamma, delta, and epsilon subunits. The proton channel likely has nine subunits (a, b, c, d, e, f, g, F6 and 8). This gene encodes the f subunit of the Fo complex. Alternatively spliced transcript variants encoding different isoforms have been identified for this gene. This gene has multiple pseudogenes. Naturally occurring read-through transcription also exists between this gene and the downstream pentatricopeptide repeat domain 1 (PTCD1) gene. [provided by RefSeq, Nov 2010]

SHMT2 Gene

serine hydroxymethyltransferase 2 (mitochondrial)

This gene encodes the mitochondrial form of a pyridoxal phosphate-dependent enzyme that catalyzes the reversible reaction of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate. The encoded product is primarily responsible for glycine synthesis. The activity of the encoded protein has been suggested to be the primary source of intracellular glycine. The gene which encodes the cytosolic form of this enzyme is located on chromosome 17. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2009]

TARS2P1 Gene

threonyl-tRNA synthetase 2, mitochondrial pseudogene

TIMM10B Gene

translocase of inner mitochondrial membrane 10 homolog B (yeast)

FXC1, or TIMM10B, belongs to a family of evolutionarily conserved proteins that are organized in heterooligomeric complexes in the mitochondrial intermembrane space. These proteins mediate the import and insertion of hydrophobic membrane proteins into the mitochondrial inner membrane.[supplied by OMIM, Apr 2004]

MSTO1 Gene

misato 1, mitochondrial distribution and morphology regulator

Involved in mitochondrion distribution; mitochondrion organization; and positive regulation of mitochondrial fusion. Located in mitochondrial outer membrane. Is active in cytosol. [provided by Alliance of Genome Resources, Mar 2025]

TFAM Gene

transcription factor A, mitochondrial

This gene encodes a key mitochondrial transcription factor containing two high mobility group motifs. The encoded protein also functions in mitochondrial DNA replication and repair. Sequence polymorphisms in this gene are associated with Alzheimer's and Parkinson's diseases. There are pseudogenes for this gene on chromosomes 6, 7, and 11. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2012]

ERAL1 Gene

Era-like 12S mitochondrial rRNA chaperone 1

The protein encoded by this gene is a GTPase that localizes to the mitochondrion. The encoded protein binds to the 3' terminal stem loop of 12S mitochondrial rRNA and is required for proper assembly of the 28S small mitochondrial ribosomal subunit. Deletion of this gene has been shown to cause mitochondrial dysfunction, growth retardation, and apoptosis. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2015]

ALDH2 Gene

aldehyde dehydrogenase 2 family (mitochondrial)

This protein belongs to the aldehyde dehydrogenase family of proteins. Aldehyde dehydrogenase is the second enzyme of the major oxidative pathway of alcohol metabolism. Two major liver isoforms of aldehyde dehydrogenase, cytosolic and mitochondrial, can be distinguished by their electrophoretic mobilities, kinetic properties, and subcellular localizations. Most Caucasians have two major isozymes, while approximately 50% of East Asians have the cytosolic isozyme but not the mitochondrial isozyme. A remarkably higher frequency of acute alcohol intoxication among East Asians than among Caucasians could be related to the absence of a catalytically active form of the mitochondrial isozyme. The increased exposure to acetaldehyde in individuals with the catalytically inactive form may also confer greater susceptibility to many types of cancer. This gene encodes a mitochondrial isoform, which has a low Km for acetaldehydes, and is localized in mitochondrial matrix. Alternative splicing results in multiple transcript variants encoding distinct isoforms.[provided by RefSeq, Nov 2016]

LOC642355 Gene

nucleoside diphosphate kinase, mitochondrial-like

MRPS11P1 Gene

mitochondrial ribosomal protein S11 pseudogene 1

HARS2 Gene

histidyl-tRNA synthetase 2, mitochondrial

Aminoacyl-tRNA synthetases are a class of enzymes that charge tRNAs with their cognate amino acids. The protein encoded by this gene is an enzyme belonging to the class II family of aminoacyl-tRNA synthetases. Functioning in the synthesis of histidyl-transfer RNA, the enzyme plays an accessory role in the regulation of protein biosynthesis. The gene is located in a head-to-head orientation with HARS on chromosome five, where the homologous genes likely share a bidirectional promoter. Mutations in this gene are associated with the pathogenesis of Perrault syndrome, which involves ovarian dysgenesis and sensorineural hearing loss. Alternative splicing results in multiple transcript variants of this gene. [provided by RefSeq, Jul 2013]

TOMM40L Gene

translocase of outer mitochondrial membrane 40 homolog (yeast)-like

Predicted to enable protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Located in mitochondrion. Part of protein-containing complex. [provided by Alliance of Genome Resources, Mar 2025]

LONP1 Gene

lon peptidase 1, mitochondrial

This gene encodes a mitochondrial matrix protein that belongs to the Lon family of ATP-dependent proteases. This protein mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides in the mitochondrial matrix. It may also have a chaperone function in the assembly of inner membrane protein complexes, and participate in the regulation of mitochondrial gene expression and maintenance of the integrity of the mitochondrial genome. Decreased expression of this gene has been noted in a patient with hereditary spastic paraplegia (PMID:18378094). Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Feb 2013]

FTMT Gene

ferritin mitochondrial

Enables ferroxidase activity and iron ion binding activity. Involved in several processes, including intracellular iron ion homeostasis; positive regulation of aconitate hydratase activity; and positive regulation of succinate dehydrogenase activity. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

TIMM50 Gene

translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)

This gene encodes a subunit of the TIM23 inner mitochondrial membrane translocase complex. The encoded protein functions as the receptor subunit that recognizes the mitochondrial targeting signal, or presequence, on protein cargo that is destined for the mitochondrial inner membrane and matrix. This protein may also play a role in maintaining the membrane permeability barrier, and knockdown of this gene in human cells results in the release of cytochrome c and apoptosis. [provided by RefSeq, Jul 2016]

MAVS Gene

mitochondrial antiviral signaling protein

This gene encodes an intermediary protein necessary in the virus-triggered beta interferon signaling pathways. It is required for activation of transcription factors which regulate expression of beta interferon and contributes to antiviral innate immunity. [provided by RefSeq, Jul 2020]

TK2 Gene

thymidine kinase 2, mitochondrial

This gene encodes a deoxyribonucleoside kinase that specifically phosphorylates thymidine, deoxycytidine, and deoxyuridine. The encoded enzyme localizes to the mitochondria and is required for mitochondrial DNA synthesis. Mutations in this gene are associated with a myopathic form of mitochondrial DNA depletion syndrome. Alternate splicing results in multiple transcript variants encoding distinct isoforms, some of which lack transit peptide, so are not localized to mitochondria. [provided by RefSeq, Dec 2012]

LOC100996384 Gene

aconitate hydratase, mitochondrial pseudogene

LOC101060049 Gene

ornithine aminotransferase, mitochondrial-like

MINOS1P4 Gene

mitochondrial inner membrane organizing system 1 pseudogene 4

LOC133332 Gene

mitochondrial ribosomal protein S5 pseudogene

TOMM6 Gene

translocase of outer mitochondrial membrane 6 homolog (yeast)

Predicted to be involved in protein insertion into mitochondrial outer membrane. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

TOMM7 Gene

translocase of outer mitochondrial membrane 7 homolog (yeast)

This gene encodes a subunit of the translocase of the outer mitochondrial membrane. The encoded protein regulates the assembly and stability of the translocase complex. [provided by RefSeq, Oct 2012]

TOMM5 Gene

translocase of outer mitochondrial membrane 5 homolog (yeast)

Predicted to be involved in protein insertion into mitochondrial outer membrane. Located in mitochondrion. Part of mitochondrial outer membrane translocase complex. [provided by Alliance of Genome Resources, Mar 2025]

LOC100422685 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene

WARS2 Gene

tryptophanyl tRNA synthetase 2, mitochondrial

Aminoacyl-tRNA synthetases catalyze the aminoacylation of tRNA by their cognate amino acid. Because of their central role in linking amino acids with nucleotide triplets contained in tRNAs, aminoacyl-tRNA synthetases are thought to be among the first proteins that appeared in evolution. Two forms of tryptophanyl-tRNA synthetase exist, a cytoplasmic form, named WARS, and a mitochondrial form, named WARS2. This gene encodes the mitochondrial tryptophanyl-tRNA synthetase. Two alternative transcripts encoding different isoforms have been described. [provided by RefSeq, Jul 2008]

ATP5EP1 Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 1

ATP5EP2 Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2

Predicted to enable hydrolase activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in proton motive force-driven mitochondrial ATP synthesis. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

SLC25A22 Gene

solute carrier family 25 (mitochondrial carrier: glutamate), member 22

This gene encodes a mitochondrial glutamate carrier. Mutations in this gene are associated with early infantile epileptic encephalopathy. Multiple alternatively spliced variants, encoding the same protein, have been identified.[provided by RefSeq, Jul 2010]

SLC25A23 Gene

solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23

Enables ADP:phosphate antiporter activity and ATP:phosphate antiporter activity. Involved in mitochondrial transmembrane transport; positive regulation of mitochondrial calcium ion concentration; and regulation of cellular hyperosmotic salinity response. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

SLC25A21 Gene

solute carrier family 25 (mitochondrial oxoadipate carrier), member 21

SLC25A21 is a homolog of the S. cerevisiae ODC proteins, mitochondrial carriers that transport C5-C7 oxodicarboxylates across inner mitochondrial membranes. One of the species transported by ODC is 2-oxoadipate, a common intermediate in the catabolism of lysine, tryptophan, and hydroxylysine in mammals. Within mitochondria, 2-oxoadipate is converted into acetyl-CoA.[supplied by OMIM, Apr 2004]

SLC25A24 Gene

solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24

This gene encodes a carrier protein that transports ATP-Mg exchanging it for phosphate. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2012]

SLC25A25 Gene

solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25

The protein encoded by this gene belongs to the family of calcium-binding mitochondrial carriers, with a characteristic mitochondrial carrier domain at the C-terminus. These proteins are found in the inner membranes of mitochondria, and function as transport proteins. They shuttle metabolites, nucleotides and cofactors through the mitochondrial membrane and thereby connect and/or regulate cytoplasm and matrix functions. This protein may function as an ATP-Mg/Pi carrier that mediates the transport of Mg-ATP in exchange for phosphate, and likely responsible for the net uptake or efflux of adenine nucleotides into or from the mitochondria. Alternatively spliced transcript variants encoding different isoforms with a common C-terminus but variable N-termini have been described for this gene. [provided by RefSeq, Jul 2012]

SLC25A28 Gene

solute carrier family 25 (mitochondrial iron transporter), member 28

Predicted to enable ferrous iron transmembrane transporter activity. Predicted to be involved in iron import into the mitochondrion. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

SLC25A29 Gene

solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29

This gene encodes a nuclear-encoded mitochondrial protein that is a member of the large family of solute carrier family 25 (SLC25) mitochondrial transporters. The members of this superfamily are involved in numerous metabolic pathways and cell functions. This gene product was previously reported to be a mitochondrial carnitine-acylcarnitine-like (CACL) translocase (PMID:128829710) or an ornithine transporter (designated ORNT3, PMID:19287344), however, a recent study characterized the main role of this protein as a mitochondrial transporter of basic amino acids, with a preference for arginine and lysine (PMID:24652292). Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Apr 2014]

MCCD1P1 Gene

mitochondrial coiled-coil domain 1 pseudogene 1

GPD2 Gene

glycerol-3-phosphate dehydrogenase 2 (mitochondrial)

The protein encoded by this gene localizes to the inner mitochondrial membrane and catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate, using FAD as a cofactor. Along with GDP1, the encoded protein constitutes the glycerol phosphate shuttle, which reoxidizes NADH formed during glycolysis. Two transcript variants encoding the same protein have been found for this gene.[provided by RefSeq, Jan 2010]

MICU3 Gene

mitochondrial calcium uptake family, member 3

Enables calcium channel regulator activity; calcium ion sensor activity; and protein heterodimerization activity. Involved in calcium import into the mitochondrion and cellular response to calcium ion. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

MICU2 Gene

mitochondrial calcium uptake 2

Enables several functions, including calcium channel regulator activity; calcium ion sensor activity; and protein heterodimerization activity. Involved in calcium import into the mitochondrion; cellular response to calcium ion; and negative regulation of mitochondrial calcium ion concentration. Located in mitochondrial intermembrane space. Part of uniplex complex. Is active in mitochondrial inner membrane. [provided by Alliance of Genome Resources, Mar 2025]

MICU1 Gene

mitochondrial calcium uptake 1

This gene encodes an essential regulator of mitochondrial Ca2+ uptake under basal conditions. The encoded protein interacts with the mitochondrial calcium uniporter, a mitochondrial inner membrane Ca2+ channel, and is essential in preventing mitochondrial Ca2+ overload, which can cause excessive production of reactive oxygen species and cell stress. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Mar 2013]

ATP5G2P1 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 1

ATP5G2P3 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 3

ATP5G2P2 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 2

ATP5G2P4 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 4

LOC102724023 Gene

ES1 protein homolog, mitochondrial

SLC25A15P1 Gene

solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 1

SLC25A15P2 Gene

solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 2

SLC25A15P3 Gene

solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 3

SLC25A15P5 Gene

solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 5

GRPEL2P2 Gene

GrpE-like 2, mitochondrial (E. coli) pseudogene 2

ECHS1 Gene

enoyl CoA hydratase, short chain, 1, mitochondrial

The protein encoded by this gene functions in the second step of the mitochondrial fatty acid beta-oxidation pathway. It catalyzes the hydration of 2-trans-enoyl-coenzyme A (CoA) intermediates to L-3-hydroxyacyl-CoAs. The gene product is a member of the hydratase/isomerase superfamily. It localizes to the mitochondrial matrix. Transcript variants utilizing alternative transcription initiation sites have been described in the literature. [provided by RefSeq, Jul 2008]

LOC392452 Gene

mitochondrial fission factor pseudogene

ATP5HP1 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 1

ATP5HP3 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 3

ATP5HP2 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 2

ATP5HP4 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 4

FARS2 Gene

phenylalanyl-tRNA synthetase 2, mitochondrial

This gene encodes a protein that transfers phenylalanine to its cognate tRNA. This protein localizes to the mitochondrion and plays a role in mitochondrial protein translation. Mutations in this gene can cause combined oxidative phosphorylation deficiency 14 (Alpers encephalopathy). Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2016]

TOMM20 Gene

translocase of outer mitochondrial membrane 20 homolog (yeast)

Enables mitochondrion targeting sequence binding activity; protein-transporting ATPase activity; and unfolded protein binding activity. Involved in protein targeting to mitochondrion. Located in mitochondria-associated endoplasmic reticulum membrane contact site and mitochondrial outer membrane. Is active in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

TOMM22 Gene

translocase of outer mitochondrial membrane 22 homolog (yeast)

The protein encoded by this gene is an integral membrane protein of the mitochondrial outer membrane. The encoded protein interacts with TOMM20 and TOMM40, and forms a complex with several other proteins to import cytosolic preproteins into the mitochondrion. [provided by RefSeq, Jul 2008]

SLC25A6P3 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 3

MRPL37P1 Gene

mitochondrial ribosomal protein L37 pseudogene 1

DFNM2 Gene

deafness (mitochondrial) modifier 2

AARS2 Gene

alanyl-tRNA synthetase 2, mitochondrial

The protein encoded by this gene belongs to the class-II aminoacyl-tRNA synthetase family. Aminoacyl-tRNA synthetases play critical roles in mRNA translation by charging tRNAs with their cognate amino acids. The encoded protein is a mitochondrial enzyme that specifically aminoacylates alanyl-tRNA. Mutations in this gene are a cause of combined oxidative phosphorylation deficiency 8. [provided by RefSeq, Dec 2011]

MRRF Gene

mitochondrial ribosome recycling factor

This gene encodes a ribosome recycling factor, which is a component of the mitochondrial translational machinery. The encoded protein, along with mitochondrial elongation factor 2, functions in ribosomal recycling at the termination of mitochondrial translation by mediating the disassembly of ribosomes from messenger RNA. A pseudogene of this gene has been identified on chromosome X. [provided by RefSeq, Oct 2016]

IMMP1LP1 Gene

IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) pseudogene 1

LOC105379443 Gene

monofunctional C1-tetrahydrofolate synthase, mitochondrial-like

MRPS33P1 Gene

mitochondrial ribosomal protein S33 pseudogene 1

MRPS33P2 Gene

mitochondrial ribosomal protein S33 pseudogene 2

MRPS33P3 Gene

mitochondrial ribosomal protein S33 pseudogene 3

MRPS33P4 Gene

mitochondrial ribosomal protein S33 pseudogene 4

GPAT2 Gene

glycerol-3-phosphate acyltransferase 2, mitochondrial

Enables glycerol-3-phosphate O-acyltransferase activity. Predicted to be involved in glycerol-3-phosphate metabolic process; glycerolipid biosynthetic process; and piRNA processing. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

MRPL57P10 Gene

mitochondrial ribosomal protein L57 pseudogene 10

LOC100420057 Gene

aconitase 2, mitochondrial pseudogene

ATP5G3 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)

This gene encodes a subunit of mitochondrial ATP synthase. Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. ATP synthase is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, comprising the proton channel. The catalytic portion of mitochondrial ATP synthase consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and a single representative of the other 3. The proton channel seems to have nine subunits (a, b, c, d, e, f, g, F6 and 8). This gene is one of three genes that encode subunit c of the proton channel. Each of the three genes have distinct mitochondrial import sequences but encode the identical mature protein. Alternatively spliced transcript variants encoding different proteins have been identified. [provided by RefSeq, Jun 2010]

ATP5G2 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)

This gene encodes a subunit of mitochondrial ATP synthase. Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. ATP synthase is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, comprising the proton channel. The catalytic portion of mitochondrial ATP synthase consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and single representatives of the gamma, delta, and epsilon subunits. The proton channel likely has nine subunits (a, b, c, d, e, f, g, F6 and 8). There are three separate genes which encode subunit c of the proton channel and they specify precursors with different import sequences but identical mature proteins. The protein encoded by this gene is one of three precursors of subunit c. This gene has multiple pseudogenes. [provided by RefSeq, Jan 2018]

MRPL15P1 Gene

mitochondrial ribosomal protein L15 pseudogene 1

MRPL2P1 Gene

mitochondrial ribosomal protein L2 pseudogene 1

MRPL50P2 Gene

mitochondrial ribosomal protein L50 pseudogene 2

MRPL50P3 Gene

mitochondrial ribosomal protein L50 pseudogene 3

MRPL50P1 Gene

mitochondrial ribosomal protein L50 pseudogene 1

MRPL50P4 Gene

mitochondrial ribosomal protein L50 pseudogene 4

MRPL32P1 Gene

mitochondrial ribosomal protein L32 pseudogene 1

LOC653924 Gene

glycerol-3-phosphate acyltransferase 2, mitochondrial pseudogene

MRPL24 Gene

mitochondrial ribosomal protein L24

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein which is more than twice the size of its E.coli counterpart (EcoL24). Sequence analysis identified two transcript variants that encode the same protein. [provided by RefSeq, Jul 2008]

MRPL27 Gene

mitochondrial ribosomal protein L27

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. [provided by RefSeq, Jul 2008]

MRPL21 Gene

mitochondrial ribosomal protein L21

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Multiple transcript variants encoding different isoforms were identified through sequence analysis although some may be subject to nonsense-mediated decay (NMD). [provided by RefSeq, Jul 2008]

MRPL20 Gene

mitochondrial ribosomal protein L20

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. A pseudogene corresponding to this gene is found on chromosome 21q. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jan 2016]

MRPL23 Gene

mitochondrial ribosomal protein L23

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. The gene is biallelically expressed, despite its location within a region of imprinted genes on chromosome 11. [provided by RefSeq, Jul 2008]

MRPL22 Gene

mitochondrial ribosomal protein L22

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein that belongs to the L22 ribosomal protein family. A pseudogene corresponding to this gene is found on chromosome 4q. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

MRPL28 Gene

mitochondrial ribosomal protein L28

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein, a part of which was originally isolated by its ability to recognize tyrosinase in an HLA-A24-restricted fashion. [provided by RefSeq, Jul 2008]

LOC100288560 Gene

mitochondrial ribosomal protein S18C pseudogene

GRPEL1 Gene

GrpE-like 1, mitochondrial (E. coli)

Enables identical protein binding activity and unfolded protein binding activity. Predicted to be involved in protein import into mitochondrial matrix. Located in mitochondrial matrix and nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

GRPEL2 Gene

GrpE-like 2, mitochondrial (E. coli)

Predicted to enable adenyl-nucleotide exchange factor activity and unfolded protein binding activity. Predicted to be involved in protein import into mitochondrial matrix. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

BCAT2 Gene

branched chain amino-acid transaminase 2, mitochondrial

This gene encodes a branched chain aminotransferase found in mitochondria. The encoded protein forms a dimer that catalyzes the first step in the production of the branched chain amino acids leucine, isoleucine, and valine. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2009]

LOC440514 Gene

citrate synthase, mitochondrial-like

TCAIM Gene

T cell activation inhibitor, mitochondrial

Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

TSFM Gene

Ts translation elongation factor, mitochondrial

This gene encodes a mitochondrial translation elongation factor. The encoded protein is an enzyme that catalyzes the exchange of guanine nucleotides on the translation elongation factor Tu during the elongation step of mitchondrial protein translation. Mutations in this gene are associated with combined oxidative phosphorylation deficiency-3 syndrome. Alternate splicing results in multiple transcript variants.[provided by RefSeq, Mar 2010]

MRPS34 Gene

mitochondrial ribosomal protein S34

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]

TIMM8A Gene

translocase of inner mitochondrial membrane 8 homolog A (yeast)

This translocase is involved in the import and insertion of hydrophobic membrane proteins from the cytoplasm into the mitochondrial inner membrane. The gene is mutated in Mohr-Tranebjaerg syndrome/Deafness Dystonia Syndrome (MTS/DDS) and it is postulated that MTS/DDS is a mitochondrial disease caused by a defective mitochondrial protein import system. Defects in this gene also cause Jensen syndrome; an X-linked disease with opticoacoustic nerve atrophy and muscle weakness. This protein, along with TIMM13, forms a 70 kDa heterohexamer. Alternative splicing results in multiple transcript variants encoding distinct isoforms.[provided by RefSeq, Mar 2009]

TIMM8B Gene

translocase of inner mitochondrial membrane 8 homolog B (yeast)

This gene encodes a member of a well-conserved family of proteins with similarity to yeast Tim mitochondrial import proteins. This gene is encoded by a nuclear gene and is transported into the intermembrane space of the mitochondrion. When formed into complexes, these proteins guide membrane-spanning proteins across the mitochondrial intermembrane space before they are added into the mitochondrial inner membrane. This gene is adjacent to succinate dehydrogenase, subunit D (SDHD), in which mutations have been found in affected members of families with hereditary paraganglioma.[provided by RefSeq, Aug 2009]

NT5M Gene

5',3'-nucleotidase, mitochondrial

This gene encodes a 5' nucleotidase that localizes to the mitochondrial matrix. This enzyme dephosphorylates the 5'- and 2'(3')-phosphates of uracil and thymine deoxyribonucleotides. The gene is located within the Smith-Magenis syndrome region on chromosome 17. [provided by RefSeq, Jul 2008]

XPNPEP3 Gene

X-prolyl aminopeptidase 3, mitochondrial

The protein encoded by this gene belongs to the family of X-pro-aminopeptidases that utilize a metal cofactor, and remove the N-terminal amino acid from peptides with a proline residue in the penultimate position. This protein has been shown to localize to the mitochondria of renal cells, and have a role in ciliary function. Mutations in this gene are associated with nephronophthisis-like nephropathy-1. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene, however, expression of some of these isoforms in vivo is not known.[provided by RefSeq, Mar 2011]

LOC727980 Gene

translocase of outer mitochondrial membrane 40 homolog (yeast) pseudogene

TIMMDC1 Gene

translocase of inner mitochondrial membrane domain containing 1

Predicted to be involved in mitochondrial respiratory chain complex I assembly. Located in mitochondrion and nucleoplasm. Implicated in nuclear type mitochondrial complex I deficiency 31. [provided by Alliance of Genome Resources, Mar 2025]

SARS2 Gene

seryl-tRNA synthetase 2, mitochondrial

This gene encodes the mitochondrial seryl-tRNA synthethase precursor, a member of the class II tRNA synthetase family. The mature enzyme catalyzes the ligation of Serine to tRNA(Ser) and participates in the biosynthesis of selenocysteinyl-tRNA(sec) in mitochondria. The enzyme contains an N-terminal tRNA binding domain and a core catalytic domain. It functions in a homodimeric form, which is stabilized by tRNA binding. This gene is regulated by a bidirectional promoter that also controls the expression of mitochondrial ribosomal protein S12. Both genes are within the critical interval for the autosomal dominant deafness locus DFNA4 and might be linked to this disease. Multiple transcript variants encoding different isoforms have been identified for this gene. [provided by RefSeq, Mar 2009]

GTPBP3 Gene

GTP binding protein 3 (mitochondrial)

This locus encodes a GTP-binding protein. The encoded protein is localized to the mitochondria and may play a role in mitochondrial tRNA modification. Polymorphisms at this locus may be associated with severity of aminoglycoside-induced deafness, a disease associated with a mutation in the 12S rRNA. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Sep 2010]

SLC25A1P4 Gene

solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 4

SLC25A1P5 Gene

solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 5

SLC25A1P1 Gene

solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 1

SLC25A1P2 Gene

solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 2

SLC25A1P3 Gene

solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 3

MCU Gene

mitochondrial calcium uniporter

Enables calcium channel activity; identical protein binding activity; and uniporter activity. Involved in several processes, including cellular response to calcium ion starvation; positive regulation of mitochondrial calcium ion concentration; and positive regulation of mitochondrial fission. Located in mitochondrion. Part of uniplex complex. Is active in mitochondrial inner membrane. [provided by Alliance of Genome Resources, Mar 2025]

TIMM9 Gene

translocase of inner mitochondrial membrane 9 homolog (yeast)

TIMM9 belongs to a family of evolutionarily conserved proteins that are organized in heterooligomeric complexes in the mitochondrial intermembrane space. These proteins mediate the import and insertion of hydrophobic membrane proteins into the mitochondrial inner membrane.[supplied by OMIM, Apr 2004]

LOC100129577 Gene

mitochondrial carrier 1 pseudogene

MINOS1P3 Gene

mitochondrial inner membrane organizing system 1 pseudogene 3

MINOS1P2 Gene

mitochondrial inner membrane organizing system 1 pseudogene 2

MINOS1P1 Gene

mitochondrial inner membrane organizing system 1 pseudogene 1

LOC642661 Gene

translocase of outer mitochondrial membrane 40 homolog (yeast) pseudogene

LOC100420620 Gene

mitochondrial calcium uniporter regulator 1 pseudogene

ATP5A1P4 Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 4

ATP5A1P5 Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 5

ATP5A1P7 Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 7

ATP5A1P2 Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 2

ATP5A1P3 Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 3

ATP5A1P8 Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 8

MRPS18CP2 Gene

mitochondrial ribosomal protein S18C pseudogene 2

NDUFA4 Gene

NDUFA4, mitochondrial complex associated

The protein encoded by this gene belongs to the complex I 9kDa subunit family. Mammalian complex I of mitochondrial respiratory chain is composed of 45 different subunits. This protein has NADH dehydrogenase activity and oxidoreductase activity. It transfers electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. [provided by RefSeq, Jul 2008]

MTIF2P1 Gene

mitochondrial translational initiation factor 2 pseudogene 1

ATP5A1P10 Gene

ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 10

TOMM70A Gene

translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)

This gene encodes an import receptor of the outer mitochondrial membrane that is part of the translocase of the outer membrane complex. This protein is involved in the import of mitochondrial precursor proteins. The protein interacts with the SARS-CoV and SARS-Cov-2 ORF9b proteins. [provided by RefSeq, Dec 2021]

MCCD1P2 Gene

mitochondrial coiled-coil domain 1 pseudogene 2

MRPL36P1 Gene

mitochondrial ribosomal protein L36 pseudogene 1

MRPS15P1 Gene

mitochondrial ribosomal protein S15 pseudogene 1

MRPS15P2 Gene

mitochondrial ribosomal protein S15 pseudogene 2

MTERF2 Gene

mitochondrial transcription termination factor 2

Enables DNA binding activity. Predicted to be involved in termination of mitochondrial transcription. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

MTERF3 Gene

mitochondrial transcription termination factor 3

Enables transcription cis-regulatory region binding activity. Involved in negative regulation of DNA-templated transcription. Located in cytosol and mitochondrial matrix. [provided by Alliance of Genome Resources, Mar 2025]

MTERF1 Gene

mitochondrial transcription termination factor 1

This gene encodes a mitochondrial transcription termination factor. This protein participates in attenuating transcription from the mitochondrial genome; this attenuation allows higher levels of expression of 16S ribosomal RNA relative to the tRNA gene downstream. The product of this gene has three leucine zipper motifs bracketed by two basic domains that are all required for DNA binding. There is evidence that, for this protein, the zippers participate in intramolecular interactions that establish the three-dimensional structure required for DNA binding. [provided by RefSeq, Jul 2008]

MTERF4 Gene

mitochondrial transcription termination factor 4

Enables rRNA binding activity. Predicted to be involved in mitochondrial ribosome assembly and mitochondrial transcription. Predicted to act upstream of or within several processes, including camera-type eye development; protein targeting to mitochondrion; and ribosome assembly. Located in cytosol and mitochondrion. Part of mitochondrial large ribosomal subunit. [provided by Alliance of Genome Resources, Mar 2025]

TFB1M Gene

transcription factor B1, mitochondrial

The protein encoded by this gene is a dimethyltransferase that methylates the conserved stem loop of mitochondrial 12S rRNA. The encoded protein also is part of the basal mitochondrial transcription complex and is necessary for mitochondrial gene expression. The methylation and transcriptional activities of this protein are independent of one another. Variations in this gene may influence the severity of aminoglycoside-induced deafness (AID).[provided by RefSeq, Aug 2010]

LOC729999 Gene

glycerol-3-phosphate dehydrogenase 2 (mitochondrial) pseudogene

LOC100422473 Gene

translocase of outer mitochondrial membrane 40 homolog (yeast) pseudogene

ATP5F1P1 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 1

ATP5F1P3 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 3

ATP5F1P5 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 5

ATP5F1P4 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 4

ATP5F1P7 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 7

ATP5F1P6 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 6

LOC100129966 Gene

mitochondrial carrier 1 pseudogene

MRM1 Gene

mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)

Enables rRNA (guanosine-2'-O-)-methyltransferase activity. Involved in rRNA processing. Located in mitochondrial matrix. [provided by Alliance of Genome Resources, Mar 2025]

LOC100130270 Gene

NDUFA4, mitochondrial complex associated pseudogene

MRPL53P1 Gene

mitochondrial ribosomal protein L53 pseudogene 1

MRPS21P9 Gene

mitochondrial ribosomal protein S21 pseudogene 9

MRPS21P4 Gene

mitochondrial ribosomal protein S21 pseudogene 4

MRPS21P7 Gene

mitochondrial ribosomal protein S21 pseudogene 7

UCP1 Gene

uncoupling protein 1 (mitochondrial, proton carrier)

Mitochondrial uncoupling proteins (UCP) are members of the family of mitochondrial anion carrier proteins (MACP). UCPs separate oxidative phosphorylation from ATP synthesis with energy dissipated as heat, also referred to as the mitochondrial proton leak. UCPs facilitate the transfer of anions from the inner to the outer mitochondrial membrane and the return transfer of protons from the outer to the inner mitochondrial membrane. They also reduce the mitochondrial membrane potential in mammalian cells. Tissue specificity occurs for the different UCPs and the exact methods of how UCPs transfer H+/OH- are not known. UCPs contain the three homologous protein domains of MACPs. This gene is expressed only in brown adipose tissue, a specialized tissue which functions to produce heat. [provided by RefSeq, Jul 2008]

UCP3 Gene

uncoupling protein 3 (mitochondrial, proton carrier)

Mitochondrial uncoupling proteins (UCP) are members of the larger family of mitochondrial anion carrier proteins (MACP). UCPs separate oxidative phosphorylation from ATP synthesis with energy dissipated as heat, also referred to as the mitochondrial proton leak. UCPs facilitate the transfer of anions from the inner to the outer mitochondrial membrane and the return transfer of protons from the outer to the inner mitochondrial membrane. They also reduce the mitochondrial membrane potential in mammalian cells. The different UCPs have tissue-specific expression; this gene is primarily expressed in skeletal muscle. This gene's protein product is postulated to protect mitochondria against lipid-induced oxidative stress. Expression levels of this gene increase when fatty acid supplies to mitochondria exceed their oxidation capacity and the protein enables the export of fatty acids from mitochondria. UCPs contain the three solcar protein domains typically found in MACPs. Two splice variants have been found for this gene.[provided by RefSeq, Nov 2008]

MSS51 Gene

MSS51 mitochondrial translational activator

Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Mar 2025]

MINOS1 Gene

mitochondrial inner membrane organizing system 1

Involved in cristae formation. Located in mitochondrion. Part of MIB complex; MICOS complex; and SAM complex. [provided by Alliance of Genome Resources, Mar 2025]

ATPAF2 Gene

ATP synthase mitochondrial F1 complex assembly factor 2

This gene encodes an assembly factor for the F(1) component of the mitochondrial ATP synthase. This protein binds specifically to the F1 alpha subunit and is thought to prevent this subunit from forming nonproductive homooligomers during enzyme assembly. This gene is located within the Smith-Magenis syndrome region on chromosome 17. An alternatively spliced transcript variant has been described, but its biological validity has not been determined. [provided by RefSeq, Jul 2008]

ATPAF1 Gene

ATP synthase mitochondrial F1 complex assembly factor 1

This gene encodes an assembly factor for the F(1) component of the mitochondrial ATP synthase. This protein binds specifically to the F1 beta subunit and is thought to prevent this subunit from forming nonproductive homooligomers during enzyme assembly. Alternatively spliced transcript variants have been identified. [provided by RefSeq, Aug 2011]

LARS2 Gene

leucyl-tRNA synthetase 2, mitochondrial

This gene encodes a class 1 aminoacyl-tRNA synthetase, mitochondrial leucyl-tRNA synthetase. Each of the twenty aminoacyl-tRNA synthetases catalyzes the aminoacylation of a specific tRNA or tRNA isoaccepting family with the cognate amino acid. [provided by RefSeq, Jul 2008]

ATP5LP5 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 5

ATP5LP4 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 4

ATP5LP7 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 7

ATP5LP6 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 6

ATP5LP1 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 1

ATP5LP3 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 3

ATP5LP2 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 2

ATP5LP8 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 8

LOC729126 Gene

GrpE-like 1, mitochondrial (E. coli) pseudogene

MRPL54 Gene

mitochondrial ribosomal protein L54

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. [provided by RefSeq, Jul 2008]

MRPL55 Gene

mitochondrial ribosomal protein L55

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Multiple transcript variants encoding two different isoforms were identified through sequence analysis. [provided by RefSeq, Jul 2008]

MRPL57 Gene

mitochondrial ribosomal protein L57

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a protein which belongs to an undetermined ribosomal subunit and which seems to be specific to animal mitoribosomes. Pseudogenes corresponding to this gene are found on chromosomes 1p, 1q, 3p, 5q, 8q, 14q, and Y. [provided by RefSeq, Jul 2008]

MRPL50 Gene

mitochondrial ribosomal protein L50

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a putative 39S subunit protein and belongs to the L47P ribosomal protein family. Pseudogenes corresponding to this gene are found on chromosomes 2p, 2q, 5p, and 10q. [provided by RefSeq, Jul 2008]

MRPL51 Gene

mitochondrial ribosomal protein L51

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Pseudogenes corresponding to this gene are found on chromosomes 4p and 21q. [provided by RefSeq, Jul 2008]

MRPL52 Gene

mitochondrial ribosomal protein L52

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein which has no bacterial homolog. Multiple transcript variants encoding different protein isoforms were identified through sequence analysis. [provided by RefSeq, Jul 2008]

MRPL53 Gene

mitochondrial ribosomal protein L53

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. A pseudogene corresponding to this gene is found on chromosome 1p. [provided by RefSeq, Jul 2008]

LOC100129693 Gene

mitochondrial ribosomal protein L19 pseudogene

LOC101060206 Gene

transcription termination factor 1, mitochondrial-like

MRPS16P3 Gene

mitochondrial ribosomal protein S16 pseudogene 3

MRPS16P2 Gene

mitochondrial ribosomal protein S16 pseudogene 2

MRPS16P1 Gene

mitochondrial ribosomal protein S16 pseudogene 1

MRPL40P1 Gene

mitochondrial ribosomal protein L40 pseudogene 1

MFF Gene

mitochondrial fission factor

This is a nuclear gene encoding a protein that functions in mitochondrial and peroxisomal fission. The encoded protein recruits dynamin-1-like protein (DNM1L) to mitochondria. There are multiple pseudogenes for this gene on chromosomes 1, 5, and X. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2013]

MRPL20P1 Gene

mitochondrial ribosomal protein L20 pseudogene 1

MDH2 Gene

malate dehydrogenase 2, NAD (mitochondrial)

Malate dehydrogenase catalyzes the reversible oxidation of malate to oxaloacetate, utilizing the NAD/NADH cofactor system in the citric acid cycle. The protein encoded by this gene is localized to the mitochondria and may play pivotal roles in the malate-aspartate shuttle that operates in the metabolic coordination between cytosol and mitochondria. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2013]

TOMM20L Gene

translocase of outer mitochondrial membrane 20 homolog (yeast)-like

Predicted to enable mitochondrion targeting sequence binding activity. Predicted to contribute to protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix and tRNA import into mitochondrion. Predicted to be located in mitochondrial outer membrane. Predicted to be part of mitochondrial outer membrane translocase complex. [provided by Alliance of Genome Resources, Mar 2025]

SLC25A3 Gene

solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3

The protein encoded by this gene catalyzes the transport of phosphate into the mitochondrial matrix, either by proton cotransport or in exchange for hydroxyl ions. The protein contains three related segments arranged in tandem which are related to those found in other characterized members of the mitochondrial carrier family. Both the N-terminal and C-terminal regions of this protein protrude toward the cytosol. Multiple alternatively spliced transcript variants have been isolated. [provided by RefSeq, Jul 2008]

ATP5G1P3 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 3

ATP5G1P1 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 1

TMEM243 Gene

transmembrane protein 243, mitochondrial

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

LOC100132126 Gene

mitochondrial carrier 2 pseudogene

LOC442155 Gene

transcription factor B2, mitochondrial pseudogene

LOC101060199 Gene

acyl-coenzyme A synthetase ACSM6, mitochondrial-like

LOC100131779 Gene

translocase of outer mitochondrial membrane 6 homolog (yeast) pseudogene

IDH2 Gene

isocitrate dehydrogenase 2 (NADP+), mitochondrial

Isocitrate dehydrogenases catalyze the oxidative decarboxylation of isocitrate to 2-oxoglutarate. These enzymes belong to two distinct subclasses, one of which utilizes NAD(+) as the electron acceptor and the other NADP(+). Five isocitrate dehydrogenases have been reported: three NAD(+)-dependent isocitrate dehydrogenases, which localize to the mitochondrial matrix, and two NADP(+)-dependent isocitrate dehydrogenases, one of which is mitochondrial and the other predominantly cytosolic. Each NADP(+)-dependent isozyme is a homodimer. The protein encoded by this gene is the NADP(+)-dependent isocitrate dehydrogenase found in the mitochondria. It plays a role in intermediary metabolism and energy production. This protein may tightly associate or interact with the pyruvate dehydrogenase complex. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2014]

LOC101060442 Gene

calcium-binding mitochondrial carrier protein SCaMC-1-like

SLC25A5P5 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 5

SLC25A5P6 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 6

LOC646639 Gene

translocase of outer mitochondrial membrane 40 homolog (yeast) pseudogene

MRPL41 Gene

mitochondrial ribosomal protein L41

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein that belongs to the YmL27 ribosomal protein family. [provided by RefSeq, Jul 2008]

MRPL45 Gene

mitochondrial ribosomal protein L45

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Alternative splicing results in multiple transcript variants. Pseudogenes corresponding to this gene are found on chromosomes 2p and 17q. [provided by RefSeq, May 2013]

ATP5F1P2 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 2

GLS2 Gene

glutaminase 2 (liver, mitochondrial)

The protein encoded by this gene is a mitochondrial phosphate-activated glutaminase that catalyzes the hydrolysis of glutamine to stoichiometric amounts of glutamate and ammonia. Originally thought to be liver-specific, this protein has been found in other tissues as well. Alternative splicing results in multiple transcript variants that encode different isoforms. [provided by RefSeq, Jul 2013]

LOC648934 Gene

citrate synthase, mitochondrial-like

IMMT Gene

inner membrane protein, mitochondrial

Enables RNA binding activity. Involved in cristae formation. Located in mitochondrial inner membrane. Part of MICOS complex. [provided by Alliance of Genome Resources, Mar 2025]

IMMTP1 Gene

inner membrane protein, mitochondrial (mitofilin) pseudogene 1

MRPL48P1 Gene

mitochondrial ribosomal protein L48 pseudogene 1

LOC644203 Gene

glutaryl-CoA dehydrogenase, mitochondrial-like

LOC100420247 Gene

mitochondrial fission factor pseudogene

LOC100506224 Gene

translocase of outer mitochondrial membrane 5 homolog (yeast) pseudogene

SLC25A15P4 Gene

solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 4

GRPEL2P1 Gene

GrpE-like 2, mitochondrial (E. coli) pseudogene 1

GRPEL2P3 Gene

GrpE-like 2, mitochondrial (E. coli) pseudogene 3

TIMM23 Gene

translocase of inner mitochondrial membrane 23 homolog (yeast)

The protein encoded by this gene is part of a complex located in the inner mitochondrial membrane that mediates the transport of transit peptide-containing proteins across the membrane. Multiple transcript variants, one protein-coding and others not protein-coding, have been found for this gene. [provided by RefSeq, Jul 2012]

TIMM22 Gene

translocase of inner mitochondrial membrane 22 homolog (yeast)

Multipass transmembrane proteins are brought into mitochondria and inserted into the mitochondrial inner membrane by way of the TIM22 complex. This complex has six subunits and is a twin-pore translocase. The protein encoded by this gene is a subunit of TIM22 and represents the voltage-activated and signal-gated channel. [provided by RefSeq, Jul 2016]

TUFM Gene

Tu translation elongation factor, mitochondrial

This gene encodes a protein which participates in protein translation in mitochondria. Mutations in this gene have been associated with combined oxidative phosphorylation deficiency resulting in lactic acidosis and fatal encephalopathy. A pseudogene has been identified on chromosome 17. [provided by RefSeq, Jul 2008]

MTRF1L Gene

mitochondrial translational release factor 1-like

The protein encoded by this gene plays a role in mitochondrial translation termination, and is thought to be a release factor that is involved in the dissociation of the complete protein from the final tRNA, the ribosome, and the cognate mRNA. This protein acts upon UAA and UAG stop codons, but has no in vitro activity against UGA, which encodes tryptophan in human mitochondrion, or, the mitochondrial non-cognate stop codons, AGA and AGG. This protein shares sequence similarity to bacterial release factors. Pseudogenes of this gene are found on chromosomes 4, 8, and 11. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2014]

TIMM17B Gene

translocase of inner mitochondrial membrane 17 homolog B (yeast)

This gene encodes a multipass transmembrane protein that forms an integral component of the mitochondrial translocase TIM23 complex. This complex facilitates the transport of mitochondrial proteins from the cytosol across the mitochondrial inner membrane and into the mitochondrion. There is a pseudogene for this gene on chromosome 12. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2013]

TIMM17A Gene

translocase of inner mitochondrial membrane 17 homolog A (yeast)

Predicted to contribute to protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Located in mitochondrial inner membrane and nucleoplasm. Part of TIM23 mitochondrial import inner membrane translocase complex. [provided by Alliance of Genome Resources, Mar 2025]

TUFMP1 Gene

Tu translation elongation factor, mitochondrial pseudogene 1

LOC100420951 Gene

mitochondrial ribosomal protein L18 pseudogene

LOC100420954 Gene

GrpE-like 1, mitochondrial (E. coli) pseudogene

PMPCB Gene

peptidase (mitochondrial processing) beta

This gene is a member of the peptidase M16 family and encodes a protein with a zinc-binding motif. This protein is located in the mitochondrial matrix and catalyzes the cleavage of the leader peptides of precursor proteins newly imported into the mitochondria, though it only functions as part of a heterodimeric complex. [provided by RefSeq, Jul 2008]

PMPCA Gene

peptidase (mitochondrial processing) alpha

The protein encoded by this gene is found in the mitochondrion, where it represents the alpha subunit of a proteolytic heterodimer. This heterodimer is responsible for cleaving the transit peptide from nuclear-encoded mitochondrial proteins. Defects in this gene are a cause of spinocerebellar ataxia, autosomal recessive 2. [provided by RefSeq, Mar 2016]

ATP5L Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G

Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. It is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, which comprises the proton channel. The F1 complex consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled in a ratio of 3 alpha, 3 beta, and a single representative of the other 3. The Fo seems to have nine subunits (a, b, c, d, e, f, g, F6 and 8). This gene encodes the g subunit of the Fo complex. Alternative splicing results in multiple transcript variants.[provided by RefSeq, Jun 2010]

TOP1MT Gene

topoisomerase (DNA) I, mitochondrial

This gene encodes a mitochondrial DNA topoisomerase that plays a role in the modification of DNA topology. The encoded protein is a type IB topoisomerase and catalyzes the transient breaking and rejoining of DNA to relieve tension and DNA supercoiling generated in the mitochondrial genome during replication and transcription. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, May 2012]

UCP2 Gene

uncoupling protein 2 (mitochondrial, proton carrier)

Mitochondrial uncoupling proteins (UCP) are members of the larger family of mitochondrial anion carrier proteins (MACP). UCPs separate oxidative phosphorylation from ATP synthesis with energy dissipated as heat, also referred to as the mitochondrial proton leak. UCPs facilitate the transfer of anions from the inner to the outer mitochondrial membrane and the return transfer of protons from the outer to the inner mitochondrial membrane. They also reduce the mitochondrial membrane potential in mammalian cells. Tissue specificity occurs for the different UCPs and the exact methods of how UCPs transfer H+/OH- are not known. UCPs contain the three homologous protein domains of MACPs. This gene is expressed in many tissues, with the greatest expression in skeletal muscle. It is thought to play a role in nonshivering thermogenesis, obesity and diabetes. Chromosomal order is 5'-UCP3-UCP2-3'. [provided by RefSeq, Jul 2008]

IMMP1L Gene

IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)

The mitochondrial inner membrane peptidase (IMP) complex generates mature, active proteins in the mitochondrial intermembrane space by proteolytically removing the mitochondrial targeting presequence of nuclear-encoded proteins. IMP1 and IMP2 (IMMP2L; MIM 605977) are the catalytic subunits of the IMP complex (Burri et al., 2005 [PubMed 15814844]).[supplied by OMIM, Sep 2008]

MALSU1 Gene

mitochondrial assembly of ribosomal large subunit 1

Enables mitochondrial large ribosomal subunit binding activity. Involved in negative regulation of mitochondrial translation and ribosomal large subunit biogenesis. Located in cytosol and mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

LOC348210 Gene

mitochondrial ribosomal protein L57 pseudogene

ATP5G1P2 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 2

ATP5G1P6 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 6

ATP5G1P7 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 7

ATP5G1P4 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 4

ATP5G1P5 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 5

ATP5G1P8 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 8

LOC100422628 Gene

glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) pseudogene

MRPS17P9 Gene

mitochondrial ribosomal protein S17 pseudogene 9

MRPS17P6 Gene

mitochondrial ribosomal protein S17 pseudogene 6

MRPS17P7 Gene

mitochondrial ribosomal protein S17 pseudogene 7

MRPS17P5 Gene

mitochondrial ribosomal protein S17 pseudogene 5

MRPS17P3 Gene

mitochondrial ribosomal protein S17 pseudogene 3

MRPS17P1 Gene

mitochondrial ribosomal protein S17 pseudogene 1

LOC100129626 Gene

translocase of outer mitochondrial membrane 5 homolog (yeast) pseudogene

SLC25A19 Gene

solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19

This gene encodes a mitochondrial protein that is a member of the solute carrier family. Although this protein was initially thought to be the mitochondrial deoxynucleotide carrier involved in the uptake of deoxynucleotides into the matrix of the mitochondria, further studies have demonstrated that this protein instead functions as the mitochondrial thiamine pyrophosphate carrier, which transports thiamine pyrophosphates into mitochondria. Mutations in this gene cause microcephaly, Amish type, a metabolic disease that results in severe congenital microcephaly, severe 2-ketoglutaric aciduria, and death within the first year. Multiple alternatively spliced variants, encoding the same protein, have been identified for this gene. [provided by RefSeq, Jul 2008]

SLC25A17 Gene

solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17

This gene encodes a peroxisomal membrane protein that belongs to the family of mitochondrial solute carriers. It is expressed in the liver, and is likely involved in transport. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]

SLC25A16 Gene

solute carrier family 25 (mitochondrial carrier), member 16

This gene encodes a protein that contains three tandemly repeated mitochondrial carrier protein domains. The encoded protein is localized in the inner membrane and facilitates the rapid transport and exchange of molecules between the cytosol and the mitochondrial matrix space. This gene has a possible role in Graves' disease. [provided by RefSeq, Jul 2008]

SLC25A15 Gene

solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15

This gene is a member of the mitochondrial carrier family. The encoded protein transports ornithine across the inner mitochondrial membrane from the cytosol to the mitochondrial matrix. The protein is an essential component of the urea cycle, and functions in ammonium detoxification and biosynthesis of the amino acid arginine. Mutations in this gene result in hyperornithinemia-hyperammonemia-homocitrullinuria (HHH) syndrome. There is a pseudogene of this locus on the Y chromosome.[provided by RefSeq, May 2009]

SLC25A14 Gene

solute carrier family 25 (mitochondrial carrier, brain), member 14

Mitochondrial uncoupling proteins (UCP) are members of the larger family of mitochondrial anion carrier proteins (MACP). Uncoupling proteins separate oxidative phosphorylation from ATP synthesis with energy dissipated as heat, also referred to as the mitochondrial proton leak. Uncoupling proteins facilitate the transfer of anions from the inner to the outer mitochondrial membrane and the return transfer of protons from the outer to the inner mitochondrial membrane. They also reduce the mitochondrial membrane potential in mammalian cells. This gene is widely expressed in many tissues with the greatest abundance in brain and testis. Alternative splicing results in multiple transcript variants. A pseudogene of this gene has been defined on chromosome 4. [provided by RefSeq, Aug 2013]

SLC25A11 Gene

solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11

The oxoglutarate/malate carrier transports 2-oxoglutarate across the inner membranes of mitochondria in an electroneutral exchange for malate or other dicarboxylic acids (summary by Iacobazzi et al., 1992 [PubMed 1457818]).[supplied by OMIM, Jan 2011]

SLC25A10 Gene

solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10

This gene encodes a member of a family of proteins that translocate small metabolites across the mitochondrial membrane. The encoded protein exchanges dicarboxylates, such as malate and succinate, for phosphate, sulfate, and other small molecules, thereby providing substrates for metabolic processes including the Krebs cycle and fatty acid synthesis. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Aug 2012]

MRPS18BP1 Gene

mitochondrial ribosomal protein S18B pseudogene 1

MRPS18BP2 Gene

mitochondrial ribosomal protein S18B pseudogene 2

LOC101928195 Gene

monofunctional C1-tetrahydrofolate synthase, mitochondrial-like

MRPL9P1 Gene

mitochondrial ribosomal protein L9 pseudogene 1

MRPS22P1 Gene

mitochondrial ribosomal protein S22 pseudogene 1

MRPL4 Gene

mitochondrial ribosomal protein L4

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Sequence analysis identified alternatively spliced variants that encode different protein isoforms. [provided by RefSeq, Jul 2008]

MRPL2 Gene

mitochondrial ribosomal protein L2

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein that belongs to the EcoL2 ribosomal protein family. A pseudogene corresponding to this gene is found on chromosome 12q. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2014]

MRPL3 Gene

mitochondrial ribosomal protein L3

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein that belongs to the L3P ribosomal protein family. A pseudogene corresponding to this gene is found on chromosome 13q. [provided by RefSeq, Jul 2008]

MRPL1 Gene

mitochondrial ribosomal protein L1

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein that belongs to the L1 ribosomal protein family. [provided by RefSeq, Jul 2008]

MRPL9 Gene

mitochondrial ribosomal protein L9

This is a nuclear gene encoding a protein component of the 39S subunit of the mitochondrial ribosome. Alternative splicing results in multiple transcript variants. A pseudogene of this gene is found on chromosome 8. [provided by RefSeq, Jul 2014]

MRPS5P3 Gene

mitochondrial ribosomal protein S5 pseudogene 3

MRPS5P4 Gene

mitochondrial ribosomal protein S5 pseudogene 4

MUL1 Gene

mitochondrial E3 ubiquitin protein ligase 1

Enables several functions, including p53 binding activity; ubiquitin protein ligase binding activity; and ubiquitin-like protein transferase activity. Involved in several processes, including negative regulation of defense response; positive regulation of protein metabolic process; and regulation of mitochondrion organization. Located in several cellular components, including mitochondrial outer membrane; neuronal cell body; and peroxisome. [provided by Alliance of Genome Resources, Mar 2025]

TOMM34 Gene

translocase of outer mitochondrial membrane 34

The protein encoded by this gene is involved in the import of precursor proteins into mitochondria. The encoded protein has a chaperone-like activity, binding the mature portion of unfolded proteins and aiding their import into mitochondria. This protein, which is found in the cytoplasm and sometimes associated with the outer mitochondrial membrane, has a weak ATPase activity and contains 6 TPR repeats. [provided by RefSeq, Jul 2008]

MIPEPP2 Gene

mitochondrial intermediate peptidase pseudogene 2

PARS2 Gene

prolyl-tRNA synthetase 2, mitochondrial (putative)

This gene encodes a putative member of the class II family of aminoacyl-tRNA synthetases. These enzymes play a critical role in protein biosynthesis by charging tRNAs with their cognate amino acids. This protein is encoded by the nuclear genome but is likely to be imported to the mitochondrion where it is thought to catalyze the ligation of proline to tRNA molecules. Mutations have been found in this gene in some patients with Alpers syndrome. [provided by RefSeq, Mar 2015]

LOC101060098 Gene

deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like

TIMM8BP2 Gene

translocase of inner mitochondrial membrane 8B pseudogene 2

SSBP1 Gene

single-stranded DNA binding protein 1, mitochondrial

SSBP1 is a housekeeping gene involved in mitochondrial biogenesis (Tiranti et al., 1995 [PubMed 7789991]). It is also a subunit of a single-stranded DNA (ssDNA)-binding complex involved in the maintenance of genome stability (Huang et al., 2009) [PubMed 19683501].[supplied by OMIM, Feb 2010]

MTFMT Gene

mitochondrial methionyl-tRNA formyltransferase

The protein encoded by this nuclear gene localizes to the mitochondrion, where it catalyzes the formylation of methionyl-tRNA. [provided by RefSeq, Jun 2011]

LOC102724788 Gene

proline dehydrogenase 1, mitochondrial

LOC100420899 Gene

mitochondrial ribosomal protein S25 pseudogene

LOC644924 Gene

glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) pseudogene

EARS2 Gene

glutamyl-tRNA synthetase 2, mitochondrial

This gene encodes a member of the class I family of aminoacyl-tRNA synthetases. These enzymes play a critical role in protein biosynthesis by charging tRNAs with their cognate amino acids. This protein is encoded by the nuclear genome but is likely to be imported to the mitochondrion where it is thought to catalyze the ligation of glutamate to tRNA molecules. Mutations in this gene have been associated with combined oxidative phosphorylation deficiency 12 (COXPD12). Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2015]

RARS2 Gene

arginyl-tRNA synthetase 2, mitochondrial

This nuclear gene encodes a protein that localizes to the mitochondria, where it catalyzes the transfer of L-arginine to its cognate tRNA, an important step in translation of mitochondrially-encoded proteins. Defects in this gene are a cause of pontocerebellar hypoplasia type 6 (PCH6). Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2016]

MRPL57P7 Gene

mitochondrial ribosomal protein L57 pseudogene 7

MRPL57P6 Gene

mitochondrial ribosomal protein L57 pseudogene 6

MRPL57P1 Gene

mitochondrial ribosomal protein L57 pseudogene 1

MRPL57P3 Gene

mitochondrial ribosomal protein L57 pseudogene 3

MRPL57P2 Gene

mitochondrial ribosomal protein L57 pseudogene 2

MRPL57P9 Gene

mitochondrial ribosomal protein L57 pseudogene 9

MRPL57P8 Gene

mitochondrial ribosomal protein L57 pseudogene 8

TIMM13 Gene

translocase of inner mitochondrial membrane 13 homolog (yeast)

This gene encodes a member of the evolutionarily conserved TIMM (translocase of inner mitochondrial membrane) family of proteins that function as chaperones in the import of proteins from the cytoplasm into the mitochondrial inner membrane. Proteins of this family play a role in collecting substrate proteins from the translocase of the outer mitochondrial membrane (TOM) complex and delivering them to either the sorting and assembly machinery in the outer mitochondrial membrane (SAM) complex or the TIMM22 complex in the inner mitochondrial membrane. The encoded protein and the translocase of mitochondrial inner membrane 8a protein form a 70 kDa complex in the intermembrane space. [provided by RefSeq, Jul 2013]

TIMM10 Gene

translocase of inner mitochondrial membrane 10 homolog (yeast)

The mitochondrial protein encoded by this gene belongs to a family of evolutionarily conserved proteins that are organized in heterooligomeric complexes in the mitochondrial intermembrane space. These proteins mediate the import and insertion of hydrophobic membrane proteins into the mitochondrial inner membrane, functioning as intermembrane space chaperones for the highly insoluble carrier proteins. [provided by RefSeq, Nov 2011]

YARS2 Gene

tyrosyl-tRNA synthetase 2, mitochondrial

This gene encodes a mitochondrial protein that catalyzes the attachment of tyrosine to tRNA(Tyr). Mutations in this gene are associated with myopathy with lactic acidosis and sideroblastic anemia type 2 (MLASA2). [provided by RefSeq, Jan 2011]

MRPL49P1 Gene

mitochondrial ribosomal protein L49 pseudogene 1

MRPL49P2 Gene

mitochondrial ribosomal protein L49 pseudogene 2

ATP5F1 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1

This gene encodes a subunit of mitochondrial ATP synthase. Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. ATP synthase is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, comprising the proton channel. The catalytic portion of mitochondrial ATP synthase consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and a single representative of the other 3. The proton channel seems to have nine subunits (a, b, c, d, e, f, g, F6 and 8). This gene encodes the b subunit of the proton channel. [provided by RefSeq, Jul 2008]

MTFR1L Gene

mitochondrial fission regulator 1-like

Predicted to be involved in aerobic respiration and mitochondrial fission. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

NARS2 Gene

asparaginyl-tRNA synthetase 2, mitochondrial (putative)

This gene encodes a putative member of the class II family of aminoacyl-tRNA synthetases. These enzymes play a critical role in protein biosynthesis by charging tRNAs with their cognate amino acids. This protein is encoded by the nuclear genome but is likely to be imported to the mitochondrion where it is thought to catalyze the ligation of asparagine to tRNA molecules. Mutations in this gene have been associated with combined oxidative phosphorylation deficiency 24 (COXPD24). [provided by RefSeq, Mar 2015]

TIMM21 Gene

translocase of inner mitochondrial membrane 21 homolog (yeast)

Involved in mitochondrial cytochrome c oxidase assembly; mitochondrial respiratory chain complex I assembly; and protein import into mitochondrial matrix. Located in mitochondrion. Part of TIM23 mitochondrial import inner membrane translocase complex. [provided by Alliance of Genome Resources, Mar 2025]

IMMP1LP2 Gene

IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) pseudogene 2

MRPS25P1 Gene

mitochondrial ribosomal protein S25 pseudogene 1

LOC644762 Gene

mitochondrial fission factor pseudogene

CYB5B Gene

cytochrome b5 type B (outer mitochondrial membrane)

Enables heme binding activity. Contributes to nitrite reductase (NO-forming) activity. Involved in nitric oxide biosynthetic process. Located in membrane. Part of nitric-oxide synthase complex. [provided by Alliance of Genome Resources, Mar 2025]

PCK2 Gene

phosphoenolpyruvate carboxykinase 2 (mitochondrial)

This gene encodes a mitochondrial enzyme that catalyzes the conversion of oxaloacetate to phosphoenolpyruvate in the presence of guanosine triphosphate (GTP). A cytosolic form of this protein is encoded by a different gene and is the key enzyme of gluconeogenesis in the liver. Alternatively spliced transcript variants have been described. [provided by RefSeq, Apr 2014]

MRPL36 Gene

mitochondrial ribosomal protein L36

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. A pseudogene corresponding to this gene is found on chromosome 2p. [provided by RefSeq, Jul 2008]

MRPL37 Gene

mitochondrial ribosomal protein L37

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. [provided by RefSeq, Jul 2008]

MRPL34 Gene

mitochondrial ribosomal protein L34

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. [provided by RefSeq, Jul 2008]

MRPL35 Gene

mitochondrial ribosomal protein L35

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Sequence analysis identified three transcript variants. Pseudogenes corresponding to this gene are found on chromosomes 6p, 10q, and Xp. [provided by RefSeq, Jul 2008]

MRPL32 Gene

mitochondrial ribosomal protein L32

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein that belongs to the L32 ribosomal protein family. A pseudogene corresponding to this gene is found on chromosome Xp. [provided by RefSeq, Jul 2008]

MRPL33 Gene

mitochondrial ribosomal protein L33

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Jul 2008]

MRPL30 Gene

mitochondrial ribosomal protein L30

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Alternative splicing results in multiple transcript variants. Pseudogenes corresponding to this gene are found on chromosomes 6p and 12p. Read-through transcription also exists between this gene and the neighboring upstream lipoyltransferase 1 (LIPT1) gene. [provided by RefSeq, Mar 2011]

MRPL38 Gene

mitochondrial ribosomal protein L38

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. [provided by RefSeq, Jul 2008]

METAP1D Gene

methionyl aminopeptidase type 1D (mitochondrial)

The N-terminal methionine excision pathway is an essential process in which the N-terminal methionine is removed from many proteins, thus facilitating subsequent protein modification. In mitochondria, enzymes that catalyze this reaction are celled methionine aminopeptidases (MetAps, or MAPs; EC 3.4.11.18) (Serero et al., 2003 [PubMed 14532271]).[supplied by OMIM, Mar 2008]

TIMM8AP1 Gene

translocase of inner mitochondrial membrane 8 homolog A (yeast) pseudogene 1

MRPL30P1 Gene

mitochondrial ribosomal protein L30 pseudogene 1

MRPL30P2 Gene

mitochondrial ribosomal protein L30 pseudogene 2

LOC285442 Gene

mitochondrial translational release factor 1-like pseudogene

LOC102724904 Gene

monofunctional C1-tetrahydrofolate synthase, mitochondrial-like

LOC105369987 Gene

mitochondrial inner membrane protease subunit 1 pseudogene

LOC100421031 Gene

carbonic anhydrase VA, mitochondrial pseudogene

TIMM23B Gene

translocase of inner mitochondrial membrane 23 homolog B (yeast)

Predicted to enable protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

MRPS35 Gene

mitochondrial ribosomal protein S35

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that has had confusing nomenclature in the literature. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. Pseudogenes corresponding to this gene are found on chromosomes 3p, 5q, and 10q. [provided by RefSeq, Jul 2010]

MRPS36 Gene

mitochondrial ribosomal protein S36

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. The mitochondrial ribosome (mitoribosome) consists of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein. Pseudogenes corresponding to this gene are found on chromosomes 3p, 4q, 8p, 11q, 12q, and 20p. [provided by RefSeq, Jul 2008]

MRPS31 Gene

mitochondrial ribosomal protein S31

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. The 28S subunit of the mammalian mitoribosome may play a crucial and characteristic role in translation initiation. This gene encodes a 28S subunit protein that has also been associated with type 1 diabetes; however, its relationship to the etiology of this disease remains to be clarified. Pseudogenes corresponding to this gene have been found on chromosomes 3 and 13. [provided by RefSeq, Jul 2008]

MRPS30 Gene

mitochondrial ribosomal protein S30

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that is similar to the chicken pro-apoptotic protein p52. Transcript variants using alternative promoters or polyA sites have been mentioned in the literature but the complete description of these sequences is not available. [provided by RefSeq, Jul 2008]

MRPS33 Gene

mitochondrial ribosomal protein S33

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. The 28S subunit of the mammalian mitoribosome may play a crucial and characteristic role in translation initiation. This gene encodes a 28S subunit protein that is one of the more highly conserved mitochondrial ribosomal proteins among mammals, Drosophila and C. elegans. Splice variants that differ in the 5' UTR have been found for this gene; all variants encode the same protein. Pseudogenes corresponding to this gene are found on chromosomes 1q, 4p, 4q, and 20q [provided by RefSeq, Jul 2008]

LOC100310782 Gene

mitochondrial translational initiation factor 3 pseudogene

MRRFP1 Gene

mitochondrial ribosome recycling factor pseudogene 1

SLC25A6P2 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 2

SLC25A6P1 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6, pseudogene 1

SLC25A6P6 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 6

SLC25A6P5 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 5

SLC25A6P4 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 4

LOC100287966 Gene

ATP synthase-coupling factor 6, mitochondrial-like

TAMM41 Gene

TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)

Predicted to enable phosphatidate cytidylyltransferase activity. Predicted to be involved in CDP-diacylglycerol biosynthetic process and cardiolipin biosynthetic process. Is active in mitochondrion. Implicated in combined oxidative phosphorylation deficiency 56. [provided by Alliance of Genome Resources, Mar 2025]

MRPS18CP3 Gene

mitochondrial ribosomal protein S18C pseudogene 3

MRPS18CP5 Gene

mitochondrial ribosomal protein S18C pseudogene 5

MRPS18CP4 Gene

mitochondrial ribosomal protein S18C pseudogene 4

MRPS18CP6 Gene

mitochondrial ribosomal protein S18C pseudogene 6

MCUR1 Gene

mitochondrial calcium uniporter regulator 1

Involved in calcium import into the mitochondrion; calcium ion import; and positive regulation of mitochondrial calcium ion concentration. Located in mitochondrial inner membrane. [provided by Alliance of Genome Resources, Mar 2025]

MRPS21P8 Gene

mitochondrial ribosomal protein S21 pseudogene 8

MRPS21P1 Gene

mitochondrial ribosomal protein S21 pseudogene 1

MRPS21P3 Gene

mitochondrial ribosomal protein S21 pseudogene 3

MRPS21P2 Gene

mitochondrial ribosomal protein S21 pseudogene 2

MRPS21P5 Gene

mitochondrial ribosomal protein S21 pseudogene 5

MRPS21P6 Gene

mitochondrial ribosomal protein S21 pseudogene 6

MTRF1LP1 Gene

mitochondrial translational release factor 1-like pseudogene 1

MTRF1LP2 Gene

mitochondrial translational release factor 1-like pseudogene 2

SLC25A2 Gene

solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2

This intronless gene encodes a protein that localizes to the mitochondrial inner membrane and likely functions as a transporter of small molecules such as ornithine. This gene is located between the protocadherin beta and gamma gene clusters on chromosome 5. [provided by RefSeq, Dec 2014]

SLC25A1 Gene

solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1

This gene encodes a member of the mitochondrial carrier subfamily of solute carrier proteins. Members of this family include nuclear-encoded transporters that translocate small metabolites across the mitochondrial membrane. This protein regulates the movement of citrate across the inner membranes of the mitochondria. Mutations in this gene have been associated with combined D-2- and L-2-hydroxyglutaric aciduria. Pseudogenes of this gene have been identified on chromosomes 7, 11, 16, and 19. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2013]

SLC25A6 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6

This gene is a member of the mitochondrial carrier subfamily of solute carrier protein genes. The product of this gene functions as a gated pore that translocates ADP from the cytoplasm into the mitochondrial matrix and ATP from the mitochondrial matrix into the cytoplasm. The protein is implicated in the function of the permability transition pore complex (PTPC), which regulates the release of mitochondrial products that induce apoptosis. The human genome contains several non-transcribed pseudogenes of this gene. [provided by RefSeq, Jun 2013]

SLC25A5 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5

This gene is a member of the mitochondrial carrier subfamily of solute carrier protein genes. The product of this gene functions as a gated pore that translocates ADP from the cytoplasm into the mitochondrial matrix and ATP from the mitochondrial matrix into the cytoplasm. The protein forms a homodimer embedded in the inner mitochondria membrane. Suppressed expression of this gene has been shown to induce apoptosis and inhibit tumor growth. The human genome contains several non-transcribed pseudogenes of this gene.[provided by RefSeq, Jun 2013]

SLC25A4 Gene

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4

This gene is a member of the mitochondrial carrier subfamily of solute carrier protein genes. The product of this gene functions as a gated pore that translocates ADP from the cytoplasm into the mitochondrial matrix and ATP from the mitochondrial matrix into the cytoplasm. The protein forms a homodimer embedded in the inner mitochondria membrane. Mutations in this gene have been shown to result in autosomal dominant progressive external opthalmoplegia and familial hypertrophic cardiomyopathy. [provided by RefSeq, Jun 2013]

IARS2 Gene

isoleucyl-tRNA synthetase 2, mitochondrial

Aminoacyl-tRNA synthetases catalyze the aminoacylation of tRNA by their cognate amino acid. Because of their central role in linking amino acids with nucleotide triplets contained in tRNAS, aminoacyl-tRNA synthetases are thought to be among the first proteins that appeared in evolution. Two forms of isoleucine-tRNA synthetase exist, a cytoplasmic form and a mitochondrial form. This gene encodes the mitochondrial isoleucine-tRNA synthetase which belongs to the class-I aminoacyl-tRNA synthetase family. [provided by RefSeq, Dec 2014]

DECR1 Gene

2,4-dienoyl CoA reductase 1, mitochondrial

Enables 2,4-dienoyl-CoA reductase (NADPH) activity; NADPH binding activity; and identical protein binding activity. Involved in fatty acid beta-oxidation. Located in cytosol; mitochondrion; and nucleoplasm. Part of catalytic complex. [provided by Alliance of Genome Resources, Mar 2025]

LOC646828 Gene

carbonic anhydrase VA, mitochondrial pseudogene

MIPEP Gene

mitochondrial intermediate peptidase

The product of this gene performs the final step in processing a specific class of nuclear-encoded proteins targeted to the mitochondrial matrix or inner membrane. This protein is primarily involved in the maturation of oxidative phosphorylation (OXPHOS)-related proteins. This gene may contribute to the functional effects of frataxin deficiency and the clinical manifestations of Friedreich ataxia. [provided by RefSeq, Jul 2008]

MTFP1 Gene

mitochondrial fission process 1

MTP18 is a mitochondrial protein and downstream target of the phosphatidylinositol 3-kinase (see PIK3CA, MIM 171834) signaling pathway that plays a role in cell viability and mitochondrial dynamics (Tondera et al., 2004 [PubMed 15155745]).[supplied by OMIM, Mar 2008]

PDF Gene

peptide deformylase (mitochondrial)

Protein synthesis proceeds after formylation of methionine by methionyl-tRNA formyl transferase (FMT) and transfer of the charged initiator f-met tRNA to the ribosome. In eubacteria and eukaryotic organelles the product of this gene, peptide deformylase (PDF), removes the formyl group from the initiating methionine of nascent peptides. In eubacteria, deformylation of nascent peptides is required for subsequent cleavage of initiating methionines by methionine aminopeptidase. The discovery that a natural inhibitor of PDF, actinonin, acts as an antimicrobial agent in some bacteria has spurred intensive research into the design of bacterial-specific PDF inhibitors. In human cells, only mitochondrial proteins have N-formylation of initiating methionines. Protein inhibitors of PDF or siRNAs of PDF block the growth of cancer cell lines but have no effect on normal cell growth. In humans, PDF function may therefore be restricted to rapidly growing cells. [provided by RefSeq, Nov 2008]

LOC348958 Gene

mitochondrial ribosomal protein L10 pseudogene

GOT2 Gene

glutamic-oxaloacetic transaminase 2, mitochondrial

Glutamic-oxaloacetic transaminase is a pyridoxal phosphate-dependent enzyme which exists in cytoplasmic and inner-membrane mitochondrial forms, GOT1 and GOT2, respectively. GOT plays a role in amino acid metabolism and the urea and tricarboxylic acid cycles. The two enzymes are homodimeric and show close homology. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2013]

LOC100287498 Gene

NDUFA4, mitochondrial complex associated pseudogene

LOC643219 Gene

glycerol-3-phosphate acyltransferase 2, mitochondrial pseudogene

ATP5G1 Gene

ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)

This gene encodes a subunit of mitochondrial ATP synthase. Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. ATP synthase is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, comprising the proton channel. The catalytic portion of mitochondrial ATP synthase consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and a single representative of the other 3. The proton channel seems to have nine subunits (a, b, c, d, e, f, g, F6 and 8). This gene is one of three genes that encode subunit c of the proton channel. Each of the three genes have distinct mitochondrial import sequences but encode the identical mature protein. Alternatively spliced transcript variants encoding the same protein have been identified. [provided by RefSeq, Jul 2008]

LOC100421651 Gene

caseinolytic mitochondrial matrix peptidase chaperone subunit pseudogene

MRPS36P5 Gene

mitochondrial ribosomal protein S36 pseudogene 5

MRPS36P1 Gene

mitochondrial ribosomal protein S36 pseudogene 1

MRPL35P4 Gene

mitochondrial ribosomal protein L35 pseudogene 4

MRPL35P1 Gene

mitochondrial ribosomal protein L35 pseudogene 1

MRPL35P3 Gene

mitochondrial ribosomal protein L35 pseudogene 3

MRPL35P2 Gene

mitochondrial ribosomal protein L35 pseudogene 2

APOPT1 Gene

apoptogenic 1, mitochondrial

This gene encodes a protein that localizes to the mitochondria, where it stimulates the release of cytochrome c, thereby promoting programmed cell death. Mutations in this gene have been found in individuals with mitochondrial complex IV deficiency. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2014]

DARS2 Gene

aspartyl-tRNA synthetase 2, mitochondrial

The protein encoded by this gene belongs to the class-II aminoacyl-tRNA synthetase family. It is a mitochondrial enzyme that specifically aminoacylates aspartyl-tRNA. Mutations in this gene are associated with leukoencephalopathy with brainstem and spinal cord involvement and lactate elevation (LBSL). [provided by RefSeq, Nov 2009]

CPS1 Gene

carbamoyl-phosphate synthase 1, mitochondrial

The mitochondrial enzyme encoded by this gene catalyzes synthesis of carbamoyl phosphate from ammonia and bicarbonate. This reaction is the first committed step of the urea cycle, which is important in the removal of excess urea from cells. The encoded protein may also represent a core mitochondrial nucleoid protein. Three transcript variants encoding different isoforms have been found for this gene. The shortest isoform may not be localized to the mitochondrion. Mutations in this gene have been associated with carbamoyl phosphate synthetase deficiency, susceptibility to persistent pulmonary hypertension, and susceptibility to venoocclusive disease after bone marrow transplantation.[provided by RefSeq, May 2010]

LOC100420262 Gene

mitochondrial fission factor pseudogene

TOMM70 Gene

translocase of outer mitochondrial membrane 70

This gene encodes an import receptor of the outer mitochondrial membrane that is part of the translocase of the outer membrane complex. This protein is involved in the import of mitochondrial precursor proteins. The protein interacts with the SARS-CoV and SARS-Cov-2 ORF9b proteins. [provided by RefSeq, Dec 2021]

MIX23 Gene

mitochondrial matrix import factor 23

Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

MRM3 Gene

mitochondrial rRNA methyltransferase 3

Efficient translation of mitochondrial-derived transcripts requires proper assembly of the large subunit of the mitochondrial ribosome. Central to the biogenesis of this large subunit is the A-loop of mitochondrial 16S rRNA, which is modified by three rRNA methyltransferases located near mtDNA nucleoids. The protein encoded by this gene methylates G(1370) of 16S rRNA, and this modification is necessary for proper ribosomal large subnit assembly. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2015]

TIMM29 Gene

translocase of inner mitochondrial membrane 29

Enables protein transporter activity. Involved in protein insertion into mitochondrial inner membrane. Located in mitochondrial inner membrane and mitochondrial intermembrane space. Part of TIM22 mitochondrial import inner membrane insertion complex. [provided by Alliance of Genome Resources, Mar 2025]

FMC1 Gene

formation of mitochondrial complex V assembly factor 1 homolog

Involved in mitochondrial proton-transporting ATP synthase complex assembly. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

MRPL58 Gene

mitochondrial ribosomal protein L58

The protein encoded by this gene is a peptidyl-tRNA hydrolase and a vital component of the large mitochondrial ribosome. The encoded protein serves as a ribosome release factor for this ribosome, which translates mitochondrial genes. This protein may be responsible for degrading prematurely-terminated polypeptides and for reusing stalled ribosomes. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2014]

MCUB Gene

mitochondrial calcium uniporter dominant negative subunit beta

Enables calcium channel inhibitor activity. Involved in negative regulation of calcium import into the mitochondrion. Located in mitochondrial inner membrane and nucleoplasm. Part of uniplex complex. [provided by Alliance of Genome Resources, Mar 2025]

MRM2 Gene

mitochondrial rRNA methyltransferase 2

The protein encoded by this gene is a member of the S-adenosylmethionine-binding protein family. It is a nucleolar protein and it may be involved in the processing and modification of rRNA. This gene has been suggested to be involved in cell cycle control and DNA repair. [provided by RefSeq, Jul 2008]

MTRES1 Gene

mitochondrial transcription rescue factor 1

Enables ribosomal large subunit binding activity and tRNA binding activity. Involved in regulation of mitochondrial transcription and rescue of stalled ribosome. Located in mitochondrial matrix. [provided by Alliance of Genome Resources, Mar 2025]

MTARC1 Gene

mitochondrial amidoxime reducing component 1

Enables molybdenum ion binding activity; molybdopterin cofactor binding activity; and oxidoreductase activity, acting on other nitrogenous compounds as donors. Contributes to nitrite reductase (NO-forming) activity. Involved in cellular detoxification of nitrogen compound; nitrate metabolic process; and nitric oxide biosynthetic process. Located in mitochondrion. Part of nitric-oxide synthase complex. [provided by Alliance of Genome Resources, Mar 2025]

MTARC2 Gene

mitochondrial amidoxime reducing component 2

The protein encoded by this gene is an enzyme found in the outer mitochondrial membrane that reduces N-hydroxylated substrates. The encoded protein uses molybdenum as a cofactor and cytochrome b5 type B and NADH cytochrome b5 reductase as accessory proteins. One type of substrate used is N-hydroxylated nucleotide base analogues, which can be toxic to a cell. Other substrates include N(omega)-hydroxy-L-arginine (NOHA) and amidoxime prodrugs, which are activated by the encoded enzyme. Multiple transcript variants encoding the different isoforms have been found for this gene. [provided by RefSeq, Sep 2016]

MICOS10 Gene

mitochondrial contact site and cristae organizing system subunit 10

Involved in cristae formation. Located in mitochondrion. Part of MIB complex; MICOS complex; and SAM complex. [provided by Alliance of Genome Resources, Mar 2025]

MICOS13 Gene

mitochondrial contact site and cristae organizing system subunit 13

Involved in cristae formation. Located in mitochondrial crista junction and nucleoplasm. Part of MICOS complex. Implicated in combined oxidative phosphorylation deficiency 37. [provided by Alliance of Genome Resources, Mar 2025]

MTRFR Gene

mitochondrial translation release factor in rescue

This nuclear gene encodes a mitochondrial matrix protein that appears to contribute to peptide chain termination in the mitochondrial translation machinery. Two different 1 bp deletions (resulting in the same premature stop codon)result in decreased mitochondrial translation, decreased levels of oxidative phosphorylation complexes and encepthalomyopathy. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2010]

MISFA Gene

mitochondrial sheath formation associated

Predicted to be involved in sperm mitochondrial sheath assembly. Predicted to be located in mitochondrial outer membrane. [provided by Alliance of Genome Resources, Mar 2025]

STMP1 Gene

short transmembrane mitochondrial protein 1

Involved in mitochondrial cytochrome c oxidase assembly. Located in mitochondrion. Is active in mitochondrial inner membrane. [provided by Alliance of Genome Resources, Mar 2025]

MTNAP1 Gene

mitochondrial nucleoid associated protein 1

Predicted to be involved in cell population proliferation; mitochondrial DNA metabolic process; and positive regulation of mitochondrial DNA replication. Located in mitochondrial nucleoid. [provided by Alliance of Genome Resources, Mar 2025]

MLDHR Gene

mitochondrial lactate dehydrogenase regulator

Enables L-lactate dehydrogenase inhibitor activity. Involved in negative regulation of oxidative phosphorylation. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

MIURF Gene

mitochondrial elongation factor 1 upstream open reading frame

This gene represents an upstream open reading frame located in the transcripts of mitochondrial elongation factor 1 (GeneID:) gene. The open reading frame shows a strong signature of protein-coding regions in PhyloCSF and translation of the 70aa protein is supported by peptide and ribosome profiling data. [provided by RefSeq, Dec 2022]

LOC107986346 Gene

mitochondrial import receptor subunit TOM7 homolog

LOC128966601 Gene

pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial-like

MIMS2 Gene

mitochondrial inner membrane scaffold 2

MIMS1 Gene

mitochondrial inner membrane scaffold 1

Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

MISO1 Gene

mitochondrial inner membrane subdomain organizer 1

Involved in negative regulation of ERK1 and ERK2 cascade and regulation of DNA-binding transcription factor activity. Located in extracellular space. [provided by Alliance of Genome Resources, Mar 2025]

LOC124901069 Gene

short transmembrane mitochondrial protein 1-like

RNU5B-1 Gene

RNA, U5B small nuclear 1

Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4/U6 x U5 tri-snRNP complex and U5 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNF219-AS1 Gene

RNF219 antisense RNA 1

ATP13A4-AS1 Gene

ATP13A4 antisense RNA 1

LINC01221 Gene

long intergenic non-protein coding RNA 1221

ATP1B3-AS1 Gene

ATP1B3 antisense RNA 1

SRBD1 Gene

S1 RNA binding domain 1

Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. [provided by Alliance of Genome Resources, Mar 2025]

TRNAK-CUU Gene

transfer RNA lysine (anticodon CUU)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TPT1-AS1 Gene

TPT1 antisense RNA 1

Biomarker of malignant astrocytoma. [provided by Alliance of Genome Resources, Mar 2025]

LINC01227 Gene

long intergenic non-protein coding RNA 1227

PISRT1 Gene

polled intersex syndrome regulated transcript 1 (non-protein coding RNA)

LOC442042 Gene

polymerase (RNA) II (DNA directed) polypeptide D pseudogene

RNU6-67P Gene

RNA, U6 small nuclear 67, pseudogene

STAU2-AS1 Gene

STAU2 antisense RNA 1

ZNF197-AS1 Gene

ZNF197 antisense RNA 1

TRNAA-AGC Gene

transfer RNA alanine (anticodon AGC)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

NCBP2-AS1 Gene

NCBP2 antisense RNA 1

NCBP2-AS2 Gene

NCBP2 antisense RNA 2 (head to head)

Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

RNU7-36P Gene

RNA, U7 small nuclear 36 pseudogene

TRL-AAG4-1 Gene

transfer RNA-Leu (AAG) 4-1

SNORA81 Gene

small nucleolar RNA, H/ACA box 81

Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SNORA81, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]

SNORA84 Gene

small nucleolar RNA, H/ACA box 84

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SCAMP1-AS1 Gene

SCAMP1 antisense RNA 1

TRR-CCT5-1 Gene

transfer RNA-Arg (CCT) 5-1

LINC01091 Gene

long intergenic non-protein coding RNA 1091

LINC01090 Gene

long intergenic non-protein coding RNA 1090

LINC01093 Gene

long intergenic non-protein coding RNA 1093

LINC01095 Gene

long intergenic non-protein coding RNA 1095

LINC01094 Gene

long intergenic non-protein coding RNA 1094

LINC01097 Gene

long intergenic non-protein coding RNA 1097

LINC01096 Gene

long intergenic non-protein coding RNA 1096

LINC01098 Gene

long intergenic non-protein coding RNA 1098

DOCK9-AS1 Gene

DOCK9 antisense RNA 1

TRG-CCC1-1 Gene

transfer RNA-Gly (CCC) 1-1

RNA18SP2 Gene

RNA, 18S ribosomal pseudogene 2

OGFR-AS1 Gene

OGFR antisense RNA 1

LINC00320 Gene

long intergenic non-protein coding RNA 320

LINC00323 Gene

long intergenic non-protein coding RNA 323

LINC00324 Gene

long intergenic non-protein coding RNA 324

LINC00326 Gene

long intergenic non-protein coding RNA 326

LINC00327 Gene

long intergenic non-protein coding RNA 327

LINC00328 Gene

long intergenic non-protein coding RNA 328

EIF1AX-AS1 Gene

EIF1AX antisense RNA 1

SNORD115-14 Gene

small nucleolar RNA, C/D box 115-14

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-16 Gene

small nucleolar RNA, C/D box 115-16

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-17 Gene

small nucleolar RNA, C/D box 115-17

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-10 Gene

small nucleolar RNA, C/D box 115-10

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNU1-16P Gene

RNA, U1 small nuclear 16, pseudogene

NNT-AS1 Gene

NNT antisense RNA 1

LINC01215 Gene

long intergenic non-protein coding RNA 1215

LINC01214 Gene

long intergenic non-protein coding RNA 1214

LINC00847 Gene

long intergenic non-protein coding RNA 847

B3GALT5-AS1 Gene

B3GALT5 antisense RNA 1

PHAX Gene

phosphorylated adaptor for RNA export

Enables mRNA cap binding complex binding activity. Involved in RNA stabilization. Located in nucleoplasm. Part of ribonucleoprotein complex. [provided by Alliance of Genome Resources, Mar 2025]

LINC00849 Gene

long intergenic non-protein coding RNA 849

TRW-CCA5-1 Gene

transfer RNA-Trp (CCA) 5-1

CLYBL-AS2 Gene

CLYBL antisense RNA 2

CLYBL-AS1 Gene

CLYBL antisense RNA 1

MLK7-AS1 Gene

MLK7 antisense RNA 1

TUNAR Gene

TCL1 upstream neural differentiation-associated RNA

Enables ATPase binding activity. Involved in endoplasmic reticulum calcium ion homeostasis and positive regulation of insulin secretion involved in cellular response to glucose stimulus. Located in endoplasmic reticulum. [provided by Alliance of Genome Resources, Mar 2025]

MED4-AS1 Gene

MED4 antisense RNA 1

YEATS2-AS1 Gene

YEATS2 antisense RNA 1

WASIR1 Gene

WASH and IL9R antisense RNA 1

WASIR2 Gene

WASH and IL9R antisense RNA 2

TRG-CCC2-2 Gene

transfer RNA-Gly (CCC) 2-2

CYP4A22-AS1 Gene

CYP4A22 antisense RNA 1

TTC21B-AS1 Gene

TTC21B antisense RNA 1

RNU7-53P Gene

RNA, U7 small nuclear 53 pseudogene

LINC01251 Gene

long intergenic non-protein coding RNA 1251

LINC01250 Gene

long intergenic non-protein coding RNA 1250

LINC01257 Gene

long intergenic non-protein coding RNA 1257

TIAL1 Gene

TIA1 cytotoxic granule-associated RNA binding protein-like 1

The protein encoded by this gene is a member of a family of RNA-binding proteins, has three RNA recognition motifs (RRMs), and binds adenine and uridine-rich elements in mRNA and pre-mRNAs of a wide range of genes. It regulates various activities including translational control, splicing and apoptosis. Alternate transcriptional splice variants, encoding different isoforms, have been characterized. The different isoforms have been show to function differently with respect to post-transcriptional silencing. [provided by RefSeq, Jul 2008]

CTBP1-AS2 Gene

CTBP1 antisense RNA 2 (head to head)

Involved in postreplication repair and recombinational repair. Located in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

APCDD1L-AS1 Gene

APCDD1L antisense RNA 1 (head to head)

RNU5A-5P Gene

RNA, U5A small nuclear 5, pseudogene

OIP5-AS1 Gene

OIP5 antisense RNA 1

This is a conserved gene that produces a long non-coding RNA that maintains cell proliferation in embryonic stem cells. This RNA can bind to and negatively regulate the activity of multiple cellular RNAs and microRNAs, including cyclin G associated kinase and ELAV like RNA binding protein 1. [provided by RefSeq, Dec 2017]

BCDIN3D-AS1 Gene

BCDIN3D antisense RNA 1

KCTD21-AS1 Gene

KCTD21 antisense RNA 1

SNORD48 Gene

small nucleolar RNA, C/D box 48

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD90 Gene

small nucleolar RNA, C/D box 90

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD41 Gene

small nucleolar RNA, C/D box 41

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD47 Gene

small nucleolar RNA, C/D box 47

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD44 Gene

small nucleolar RNA, C/D box 44

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD93 Gene

small nucleolar RNA, C/D box 93

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD4B Gene

small nucleolar RNA, C/D box 4B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD4A Gene

small nucleolar RNA, C/D box 4A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRP-AGG1-1 Gene

transfer RNA-Pro (AGG) 1-1

ELFN1-AS1 Gene

ELFN1 antisense RNA 1

REXO1L9P Gene

REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 9, pseudogene

TRA-AGC9-1 Gene

transfer RNA-Ala (AGC) 9-1

TRA-AGC9-2 Gene

transfer RNA-Ala (AGC) 9-2

NOVA1-AS1 Gene

NOVA1 antisense RNA 1 (head to head)

CCDC26 Gene

CCDC26 long non-coding RNA

Implicated in brain cancer and high grade glioma. [provided by Alliance of Genome Resources, Mar 2025]

TRK-TTT17-1 Gene

transfer RNA-Lys (TTT) 17-1

LAMA5-AS1 Gene

LAMA5 antisense RNA 1

RBMY2JP Gene

RNA binding motif protein, Y-linked, family 2, member J pseudogene

HOXA11-AS Gene

HOXA11 antisense RNA

This gene produces a long non-coding RNA in antisense to transcription of the homeobox A11 gene. This transcript may associate with chromatin factors such as Polycomb repressive complex and act as a sponge for microRNAs, thereby participating in the regulation of expression of target genes. High levels of this transcript may be associated with tumor progression. [provided by RefSeq, Dec 2017]

ZBED5-AS1 Gene

ZBED5 antisense RNA 1

RNA5-8SP2 Gene

RNA, 5.8S ribosomal pseudogene 2

IGBP1-AS1 Gene

IGBP1 antisense RNA 1

RNA5SP193 Gene

RNA, 5S ribosomal pseudogene 193

UBOX5-AS1 Gene

UBOX5 antisense RNA 1

RNA5SP190 Gene

RNA, 5S ribosomal pseudogene 190

RNA5SP69 Gene

RNA, 5S ribosomal pseudogene 69

RNA5SP68 Gene

RNA, 5S ribosomal pseudogene 68

RNA5SP65 Gene

RNA, 5S ribosomal pseudogene 65

RNA5SP64 Gene

RNA, 5S ribosomal pseudogene 64

RNA5SP67 Gene

RNA, 5S ribosomal pseudogene 67

RNA5SP66 Gene

RNA, 5S ribosomal pseudogene 66

RNA5SP61 Gene

RNA, 5S ribosomal pseudogene 61

RNA5SP63 Gene

RNA, 5S ribosomal pseudogene 63

RNA5SP62 Gene

RNA, 5S ribosomal pseudogene 62

FAS-AS1 Gene

FAS antisense RNA 1

Predicted to be involved in regulation of gene expression. [provided by Alliance of Genome Resources, Mar 2025]

TRG-CCC5-1 Gene

transfer RNA-Gly (CCC) 5-1

GPR158-AS1 Gene

GPR158 antisense RNA 1

JARID2-AS1 Gene

JARID2 antisense RNA 1

LOC100129276 Gene

RNA exonuclease 1 homolog

RNA5SP325 Gene

RNA, 5S ribosomal pseudogene 325

RNA5SP324 Gene

RNA, 5S ribosomal pseudogene 324

RNA5SP327 Gene

RNA, 5S ribosomal pseudogene 327

RNA5SP326 Gene

RNA, 5S ribosomal pseudogene 326

RNA5SP321 Gene

RNA, 5S ribosomal pseudogene 321

RNA5SP320 Gene

RNA, 5S ribosomal pseudogene 320

RNA5SP323 Gene

RNA, 5S ribosomal pseudogene 323

RNA5SP322 Gene

RNA, 5S ribosomal pseudogene 322

RNA5SP329 Gene

RNA, 5S ribosomal pseudogene 329

RNA5SP328 Gene

RNA, 5S ribosomal pseudogene 328

CDIPT-AS1 Gene

CDIPT antisense RNA 1 (head to head)

LINC01255 Gene

long intergenic non-protein coding RNA 1255

TRW-CCA4-1 Gene

transfer RNA-Trp (CCA) 4-1

U2AF1L4 Gene

U2 small nuclear RNA auxiliary factor 1-like 4

Predicted to enable pre-mRNA 3'-splice site binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleoplasm. Predicted to be part of U2AF complex and spliceosomal complex. [provided by Alliance of Genome Resources, Mar 2025]

RNU2-6P Gene

RNA, U2 small nuclear 6, pseudogene

CNTN4-AS1 Gene

CNTN4 antisense RNA 1

TRK-TTT6-1 Gene

transfer RNA-Lys (TTT) 6-1

ADGRA1-AS1 Gene

adhesion G protein-coupled receptor A1 antisense RNA 1

SNORD91B Gene

small nucleolar RNA, C/D box 91B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD91A Gene

small nucleolar RNA, C/D box 91A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LDLRAD4-AS1 Gene

LDLRAD4 antisense RNA 1

MCF2L-AS1 Gene

MCF2L antisense RNA 1

CYP1B1-AS1 Gene

CYP1B1 antisense RNA 1

TRC-GCA2-4 Gene

transfer RNA-Cys (GCA) 2-4

TRS-TGA3-1 Gene

transfer RNA-Ser (TGA) 3-1

TRC-GCA2-1 Gene

transfer RNA-Cys (GCA) 2-1

TRC-GCA2-2 Gene

transfer RNA-Cys (GCA) 2-2

TRC-GCA2-3 Gene

transfer RNA-Cys (GCA) 2-3

LINC01491 Gene

long intergenic non-protein coding RNA 1491

LINC01490 Gene

long intergenic non-protein coding RNA 1490

PROSER2-AS1 Gene

PROSER2 antisense RNA 1

LINC01198 Gene

long intergenic non-protein coding RNA 1198

Biomarker of malignant astrocytoma. [provided by Alliance of Genome Resources, Mar 2025]

LINC01194 Gene

long intergenic non-protein coding RNA 1194

LINC01195 Gene

long intergenic non-protein coding RNA 1195

LINC01197 Gene

long intergenic non-protein coding RNA 1197

LINC01191 Gene

long intergenic non-protein coding RNA 1191

LINC01192 Gene

long intergenic non-protein coding RNA 1192

LINC01193 Gene

long intergenic non-protein coding RNA 1193

RPS6KA2-AS1 Gene

RPS6KA2 antisense RNA 1

TRD-GTC6-1 Gene

transfer RNA-Asp (GTC) 6-1

LPP-AS2 Gene

LPP antisense RNA 2

SNORD115-6 Gene

small nucleolar RNA, C/D box 115-6

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-7 Gene

small nucleolar RNA, C/D box 115-7

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-4 Gene

small nucleolar RNA, C/D box 115-4

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRG-TCC2-6 Gene

transfer RNA-Gly (TCC) 2-6

TRG-TCC2-5 Gene

transfer RNA-Gly (TCC) 2-5

SNORD115-1 Gene

small nucleolar RNA, C/D box 115-1

This gene encodes a small nucleolar RNA (snoRNA) that is found clustered with dozens of other similar snoRNAs on chromosome 15. These genes are found mostly within introns of the IC-SNURF-SNRPN transcript, which is paternally imprinted and from the Prader-Willi/Angelman syndrome (PWS) region. This gene has been designated as copy 1 of the cluster and may be involved in the regulation of RNA editing and/or alternative splicing of the serotonin receptor 2C (HTR2C) transcript. This gene is not thought to play a major role in PWS. [provided by RefSeq, Jul 2008]

TRG-TCC2-3 Gene

transfer RNA-Gly (TCC) 2-3

TRG-TCC2-2 Gene

transfer RNA-Gly (TCC) 2-2

TRG-TCC2-1 Gene

transfer RNA-Gly (TCC) 2-1

LINC01360 Gene

long intergenic non-protein coding RNA 1360

SIRPG-AS1 Gene

SIRPG antisense RNA 1

PRR34-AS1 Gene

PRR34 antisense RNA 1

TMEM220-AS1 Gene

TMEM220 antisense RNA 1

TP73-AS1 Gene

TP73 antisense RNA 1

PCBP1-AS1 Gene

PCBP1 antisense RNA 1

HEIH Gene

hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA

Biomarker of esophagus squamous cell carcinoma. [provided by Alliance of Genome Resources, Mar 2025]

CACNA1G-AS1 Gene

CACNA1G antisense RNA 1

HOXB-AS3 Gene

HOXB cluster antisense RNA 3

Involved in negative regulation of pre-miRNA processing; protein stabilization; and regulation of RNA splicing. [provided by Alliance of Genome Resources, Mar 2025]

HOXB-AS4 Gene

HOXB cluster antisense RNA 4

TRNAR-ACG Gene

transfer RNA arginine (anticodon ACG)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

LINC01365 Gene

long intergenic non-protein coding RNA 1365

ATE1-AS1 Gene

ATE1 antisense RNA 1

Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and nuclear speck. [provided by Alliance of Genome Resources, Mar 2025]

TRC-GCA9-4 Gene

transfer RNA-Cys (GCA) 9-4

LOC100131425 Gene

LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene

TESC-AS1 Gene

TESC antisense RNA 1 (head to head)

RNA5SP109 Gene

RNA, 5S ribosomal pseudogene 109

EPN2-AS1 Gene

EPN2 antisense RNA 1

RNA5SP101 Gene

RNA, 5S ribosomal pseudogene 101

AATK-AS1 Gene

AATK antisense RNA 1

Predicted to enable calcium ion binding activity. Predicted to be involved in skeletal muscle contraction. Predicted to be part of troponin complex. [provided by Alliance of Genome Resources, Mar 2025]

LOC100820733 Gene

LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene

RNU7-1 Gene

RNA, U7 small nuclear 1

Implicated in Aicardi-Goutieres syndrome. [provided by Alliance of Genome Resources, Mar 2025]

TRN-GTT8-1 Gene

transfer RNA-Asn (GTT) 8-1

ALOX12-AS1 Gene

ALOX12 antisense RNA 1

RNU6-46P Gene

RNA, U6 small nuclear 46, pseudogene

TRL-TAG1-1 Gene

transfer RNA-Leu (TAG) 1-1

CDKN1A-AS1 Gene

CDKN1A antisense RNA 1

ZNF252P-AS1 Gene

ZNF252P antisense RNA 1

TRN-GTT17-1 Gene

transfer RNA-Asn (GTT) 17-1

COL18A1-AS2 Gene

COL18A1 antisense RNA 2

TRQ-CTG8-2 Gene

transfer RNA-Gln (CTG) 8-2

LNX1-AS2 Gene

LNX1 antisense RNA 2

IGFBP7-AS1 Gene

IGFBP7 antisense RNA 1

WWC2-AS2 Gene

WWC2 antisense RNA 2

PIRC94 Gene

piwi-interacting RNA cluster 94

PIRC97 Gene

piwi-interacting RNA cluster 97

PIRC99 Gene

piwi-interacting RNA cluster 99

PIRC98 Gene

piwi-interacting RNA cluster 98

LINC01547 Gene

long intergenic non-protein coding RNA 1547

Located in endoplasmic reticulum. [provided by Alliance of Genome Resources, Mar 2025]

LINC01546 Gene

long intergenic non-protein coding RNA 1546

LINC01545 Gene

long intergenic non-protein coding RNA 1545

LINC01549 Gene

long intergenic non-protein coding RNA 1549

LINC01548 Gene

long intergenic non-protein coding RNA 1548

TRT-CGT2-1 Gene

transfer RNA-Thr (CGT) 2-1

NHS-AS1 Gene

NHS antisense RNA 1

LINC00633 Gene

long intergenic non-protein coding RNA 633

LINC00630 Gene

long intergenic non-protein coding RNA 630

LINC00636 Gene

long intergenic non-protein coding RNA 636

LINC00637 Gene

long intergenic non-protein coding RNA 637

LINC00635 Gene

long intergenic non-protein coding RNA 635

LINC00638 Gene

long intergenic non-protein coding RNA 638

LINC00639 Gene

long intergenic non-protein coding RNA 639

DLGAP4-AS1 Gene

DLGAP4 antisense RNA 1

NLGN1-AS1 Gene

NLGN1 antisense RNA 1

KRTAP5-AS1 Gene

KRTAP5-1/KRTAP5-2 antisense RNA 1

MMP25-AS1 Gene

MMP25 antisense RNA 1

TRK-TTT2-1 Gene

transfer RNA-Lys (TTT) 2-1

ZMYM4-AS1 Gene

ZMYM4 antisense RNA 1

NAV2-AS2 Gene

NAV2 antisense RNA 2

NAV2-AS3 Gene

NAV2 antisense RNA 3

NAV2-AS4 Gene

NAV2 antisense RNA 4

NAV2-AS5 Gene

NAV2 antisense RNA 5

PGM5P4-AS1 Gene

PGM5P4 antisense RNA 1

SNORD45A Gene

small nucleolar RNA, C/D box 45A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRUND-NNN6-1 Gene

transfer RNA-undetermined (NNN) 6-1

LOC101929101 Gene

carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 pseudogene

SYNCRIP Gene

synaptotagmin binding, cytoplasmic RNA interacting protein

This gene encodes a member of the cellular heterogeneous nuclear ribonucleoprotein (hnRNP) family. hnRNPs are RNA binding proteins that complex with heterogeneous nuclear RNA (hnRNA) and regulate alternative splicing, polyadenylation, and other aspects of mRNA metabolism and transport. The encoded protein plays a role in multiple aspects of mRNA maturation and is associated with several multiprotein complexes including the apoB RNA editing-complex and survival of motor neurons (SMN) complex. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is located on the short arm of chromosome 20. [provided by RefSeq, Dec 2011]

TRQ-CTG18-1 Gene

transfer RNA-Gln (CTG) 18-1

RNGTT Gene

RNA guanylyltransferase and 5'-phosphatase

Enables inorganic triphosphate phosphatase activity and mRNA guanylyltransferase activity. Involved in 7-methylguanosine mRNA capping. Predicted to be located in nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

SNORD111B Gene

small nucleolar RNA, C/D box 111B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC01348 Gene

long intergenic non-protein coding RNA 1348

TMEM246-AS1 Gene

TMEM246 antisense RNA 1

TRG-TCC6-1 Gene

transfer RNA-Gly (TCC) 6-1

TONSL-AS1 Gene

TONSL antisense RNA 1

ZNF529-AS1 Gene

ZNF529 antisense RNA 1

SLC16A12-AS1 Gene

SLC16A12 antisense RNA 1

RNU5E-6P Gene

RNA, U5E small nuclear 6, pseudogene

RNU7-24P Gene

RNA, U7 small nuclear 24 pseudogene

TRC-GCA11-1 Gene

transfer RNA-Cys (GCA) 11-1

RBMY1HP Gene

RNA binding motif protein, Y-linked, family 1, member H, pseudogene

LINC01550 Gene

long intergenic non-protein coding RNA 1550

RBM26-AS1 Gene

RBM26 antisense RNA 1

LINC01551 Gene

long intergenic non-protein coding RNA 1551

LINC01552 Gene

long intergenic non-protein coding RNA 1552

NOP14-AS1 Gene

NOP14 antisense RNA 1

PRKX-AS1 Gene

PRKX antisense RNA 1

DEPDC1-AS1 Gene

DEPDC1 antisense RNA 1

RN7SL1 Gene

RNA, 7SL, cytoplasmic 1

The signal recognition particle (SRP) is a cytoplasmic ribonucleoprotein complex that mediates cotranslational insertion of secretory proteins into the lumen of the endoplasmic reticulum. The SRP consists of 6 polypeptides (e.g., SRP19; MIM 182175) and a 7SL RNA molecule, such as RN7SL1, that is partially homologous to Alu DNA (Ullu and Weiner, 1984 [PubMed 6084597]).[supplied by OMIM, Jul 2008]

RN7SL2 Gene

RNA, 7SL, cytoplasmic 2

The signal recognition particle (SRP) is a cytoplasmic ribonucleoprotein complex that mediates cotranslational insertion of secretory proteins into the lumen of the endoplasmic reticulum. The SRP consists of 6 polypeptides (e.g., SRP19; MIM 182175) and a 7SL RNA molecule, such as RN7SL2, that is partially homologous to Alu DNA (Ullu and Weiner, 1984 [PubMed 6084597]).[supplied by OMIM, Jul 2008]

RN7SL3 Gene

RNA, 7SL, cytoplasmic 3

The signal recognition particle (SRP) is a cytoplasmic ribonucleoprotein complex that mediates cotranslational insertion of secretory proteins into the lumen of the endoplasmic reticulum. The SRP consists of 6 polypeptides (e.g., SRP19; MIM 182175) and a 7SL RNA molecule, such as RN7SL3, that is partially homologous to Alu DNA (Ullu and Weiner, 1984 [PubMed 6084597]).[supplied by OMIM, Jul 2008]

TRL-AAG5-1 Gene

transfer RNA-Leu (AAG) 5-1

TRA-TGC1-1 Gene

transfer RNA-Ala (TGC) 1-1

STK24-AS1 Gene

STK24 antisense RNA 1

NAGPA-AS1 Gene

NAGPA antisense RNA 1

LINC00879 Gene

long intergenic non-protein coding RNA 879

LINC00877 Gene

long intergenic non-protein coding RNA 877

LINC00870 Gene

long intergenic non-protein coding RNA 870

LINC00871 Gene

long intergenic non-protein coding RNA 871

LINC00265-3P Gene

long intergenic non-protein coding RNA 265-3, pseudogene

RNA5SP485 Gene

RNA, 5S ribosomal pseudogene 485

RNA5SP486 Gene

RNA, 5S ribosomal pseudogene 486

RNA5SP487 Gene

RNA, 5S ribosomal pseudogene 487

PLCXD2-AS1 Gene

PLCXD2 antisense RNA 1

LOC100421100 Gene

RNA terminal phosphate cyclase-like 1 pseudogene

TRQ-CTG1-5 Gene

transfer RNA-Gln (CTG) 1-5

LINC00969 Gene

long intergenic non-protein coding RNA 969

LINC00404 Gene

long intergenic non-protein coding RNA 404

LINC00400 Gene

long intergenic non-protein coding RNA 400

LINC00403 Gene

long intergenic non-protein coding RNA 403

LINC00402 Gene

long intergenic non-protein coding RNA 402

LINC00408 Gene

long intergenic non-protein coding RNA 408

JMJD1C-AS1 Gene

JMJD1C antisense RNA 1

NXF2B Gene

nuclear RNA export factor 2B

This gene encodes a member of a family of nuclear RNA export proteins. The encoded protein is associated with the nuclear envelope and aids in the export of mRNAs. There is a closely related paralog of this gene located adjacent on chromosome X and on the opposite strand. [provided by RefSeq, Jun 2015]

MYB-AS1 Gene

MYB antisense RNA 1

RNA5SP457 Gene

RNA, 5S ribosomal pseudogene 457

RNA5SP456 Gene

RNA, 5S ribosomal pseudogene 456

RNA5SP455 Gene

RNA, 5S ribosomal pseudogene 455

RNA5SP454 Gene

RNA, 5S ribosomal pseudogene 454

RNA5SP453 Gene

RNA, 5S ribosomal pseudogene 453

RNA5SP452 Gene

RNA, 5S ribosomal pseudogene 452

RNA5SP451 Gene

RNA, 5S ribosomal pseudogene 451

RNA5SP450 Gene

RNA, 5S ribosomal pseudogene 450

RNA5SP459 Gene

RNA, 5S ribosomal pseudogene 459

RNU1-28P Gene

RNA, U1 small nuclear 28, pseudogene

TBL1XR1-AS1 Gene

TBL1XR1 antisense RNA 1

RNA5SP23 Gene

RNA, 5S ribosomal pseudogene 23

RNU1-13P Gene

RNA, U1 small nuclear 13, pseudogene

PSMD5-AS1 Gene

PSMD5 antisense RNA 1 (head to head)

RNU7-5P Gene

RNA, U7 small nuclear 5 pseudogene

CDKN2B-AS1 Gene

CDKN2B antisense RNA 1

This gene is located within the CDKN2B-CDKN2A gene cluster at chromosome 9p21. The gene product is a functional RNA molecule that interacts with polycomb repressive complex-1 (PRC1) and -2 (PRC2), leading to epigenetic silencing of other genes in this cluster. This region is a significant genetic susceptibility locus for cardiovascular disease, and has also been linked to a number of other pathologies, including several cancers, intracranial aneurysm, type-2 diabetes, periodontitis, Alzheimer's disease, endometriosis, frailty in the elderly, and glaucoma. Multiple alternatively processed transcript variants have been detected, some of which may take the form of circular RNA molecules (PMID:21151960). [provided by RefSeq, May 2014]

TRV-CAC4-1 Gene

transfer RNA-Val (CAC) 4-1

RNA5SP21 Gene

RNA, 5S ribosomal pseudogene 21

RNA5SP20 Gene

RNA, 5S ribosomal pseudogene 20

RNA5SP22 Gene

RNA, 5S ribosomal pseudogene 22

RNA5SP25 Gene

RNA, 5S ribosomal pseudogene 25

RNA5SP24 Gene

RNA, 5S ribosomal pseudogene 24

RNA5SP27 Gene

RNA, 5S ribosomal pseudogene 27

RNA5SP29 Gene

RNA, 5S ribosomal pseudogene 29

RNU6ATAC5P Gene

RNA, U6atac small nuclear 5, pseudogene

ST3GAL5-AS1 Gene

ST3GAL5 antisense RNA 1 (head to head)

ADAMTS19-AS1 Gene

ADAMTS19 antisense RNA 1

CPEB2-AS1 Gene

CPEB2 antisense RNA 1 (head to head)

RNA5SP407 Gene

RNA, 5S ribosomal pseudogene 407

LINC01510 Gene

long intergenic non-protein coding RNA 1510

This gene encodes a natural antisense transcript highly expressed in papillary thyroid carcinomas harboring BRAF V600E mutation or RET gene rearrangements. This lncRNA induces the downstream MAPK pathway and is part of a co-expression network including different oncogenes belonging to the MAPK and PI3H/AKT pathways. In thyroid carcinomas, this gene has oncogenic properties associated with increased proliferation and drug resistance. [provided by RefSeq, Jan 2020]

LINC01114 Gene

long intergenic non-protein coding RNA 1114

LINC01115 Gene

long intergenic non-protein coding RNA 1115

LINC01116 Gene

long intergenic non-protein coding RNA 1116

LINC01117 Gene

long intergenic non-protein coding RNA 1117

LINC01111 Gene

long intergenic non-protein coding RNA 1111

LINC01118 Gene

long intergenic non-protein coding RNA 1118

IDH1-AS1 Gene

IDH1 antisense RNA 1

LINC01514 Gene

long intergenic non-protein coding RNA 1514

LINC00244 Gene

long intergenic non-protein coding RNA 244

LINC00243 Gene

long intergenic non-protein coding RNA 243

LINC00242 Gene

long intergenic non-protein coding RNA 242

LINC00240 Gene

long intergenic non-protein coding RNA 240

TAF4B Gene

TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa

TATA binding protein (TBP) and TBP-associated factors (TAFs) participate in the formation of the TFIID protein complex, which is involved in initiation of transcription of genes by RNA polymerase II. This gene encodes a cell type-specific TAF that may be responsible for mediating transcription by a subset of activators in B cells. Three transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Jun 2014]

LINC00939 Gene

long intergenic non-protein coding RNA 939

LINC00938 Gene

long intergenic non-protein coding RNA 938

LINC00930 Gene

long intergenic non-protein coding RNA 930

LINC00933 Gene

long intergenic non-protein coding RNA 933

LINC00935 Gene

long intergenic non-protein coding RNA 935

Predicted to be involved in flagellated sperm motility. Predicted to be located in cytoplasm; cytoskeleton; and sperm flagellum. Predicted to be active in axonemal A tubule inner sheath. [provided by Alliance of Genome Resources, Mar 2025]

LINC00934 Gene

long intergenic non-protein coding RNA 934

LINC00937 Gene

long intergenic non-protein coding RNA 937

RNA5SP108 Gene

RNA, 5S ribosomal pseudogene 108

LINC00443 Gene

long intergenic non-protein coding RNA 443

LINC01099 Gene

long intergenic non-protein coding RNA 1099

CSDC2 Gene

cold shock domain containing C2, RNA binding

Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in regulation of mRNA stability. Predicted to be located in nucleus. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Mar 2025]

NDUFV2-AS1 Gene

NDUFV2 antisense RNA 1

PLCH1-AS2 Gene

PLCH1 antisense RNA 2

DOCK9-AS2 Gene

DOCK9 antisense RNA 2 (head to head)

ACTN1-AS1 Gene

ACTN1 antisense RNA 1

RNA5SP248 Gene

RNA, 5S ribosomal pseudogene 248

TRA-AGC8-1 Gene

transfer RNA-Ala (AGC) 8-1

TRA-AGC8-2 Gene

transfer RNA-Ala (AGC) 8-2

TRF-GAA5-1 Gene

transfer RNA-Phe (GAA) 5-1

TRG-CCC1-2 Gene

transfer RNA-Gly (CCC) 1-2

TRS-TGA2-1 Gene

transfer RNA-Ser (TGA) 2-1

Hong et al. (1987) [PubMed 3648680] sequenced a human serine (UGA) tRNA by the dideoxysequencing method. The gene forms a typical cloverleaf structure with all appropriate conserved bases. It shows high nucleotide sequence homology with a previously sequenced serine tRNA (Yoo, 1984).[supplied by OMIM, Sep 2009]

RNA5SP364 Gene

RNA, 5S ribosomal pseudogene 364

LSM8 Gene

LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)

This gene encodes a member of the like-Sm family of proteins. The encoded protein consists of a closed barrel shape, made up of five anti-parallel beta strands and an alpha helix. This protein partners with six paralogs to form a heteroheptameric ring which transiently binds U6 small nuclear RNAs and is involved in the general maturation of RNA in the nucleus. [provided by RefSeq, Jan 2010]

TRN-GTT14-1 Gene

transfer RNA-Asn (GTT) 14-1

LSM4 Gene

LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)

This gene encodes a member of the LSm family of RNA-binding proteins. LSm proteins form stable heteromers that bind specifically to the 3'-terminal oligo(U) tract of U6 snRNA and may play a role in pre-mRNA splicing by mediating U4/U6 snRNP formation. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Nov 2011]

LSM5 Gene

LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Sm-like proteins were identified in a variety of organisms based on sequence homology with the Sm protein family (see SNRPD2; MIM 601061). Sm-like proteins contain the Sm sequence motif, which consists of 2 regions separated by a linker of variable length that folds as a loop. The Sm-like proteins are thought to form a stable heteromer present in tri-snRNP particles, which are important for pre-mRNA splicing.[supplied by OMIM, Apr 2004]

LOC100420162 Gene

nuclear RNA export factor 5 pseudogene

LSM6 Gene

LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Sm-like proteins were identified in a variety of organisms based on sequence homology with the Sm protein family (see SNRPD2; MIM 601061). Sm-like proteins contain the Sm sequence motif, which consists of 2 regions separated by a linker of variable length that folds as a loop. The Sm-like proteins are thought to form a stable heteromer present in tri-snRNP particles, which are important for pre-mRNA splicing.[supplied by OMIM, Apr 2004]

HAS2-AS1 Gene

HAS2 antisense RNA 1

SSTR5-AS1 Gene

SSTR5 antisense RNA 1

JRKL-AS1 Gene

JRKL antisense RNA 1

FREM2-AS1 Gene

FREM2 antisense RNA 1

MAMDC2-AS1 Gene

MAMDC2 antisense RNA 1

LINC00322 Gene

long intergenic non-protein coding RNA 322

GATA3-AS1 Gene

GATA3 antisense RNA 1

ISX-AS1 Gene

ISX antisense RNA 1

RNA5SP178 Gene

RNA, 5S ribosomal pseudogene 178

RNA5SP179 Gene

RNA, 5S ribosomal pseudogene 179

RNA5SP171 Gene

RNA, 5S ribosomal pseudogene 171

RNA5SP173 Gene

RNA, 5S ribosomal pseudogene 173

BHLHE40-AS1 Gene

BHLHE40 antisense RNA 1

Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. [provided by Alliance of Genome Resources, Mar 2025]

TRA-AGC21-1 Gene

transfer RNA-Ala (AGC) 21-1

ZFHX4-AS1 Gene

ZFHX4 antisense RNA 1

RNR2 Gene

RNA, ribosomal cluster 2

45S ribosomal DNA (rDNA) arrays, or clusters, are present on human chromosomes 13, 14, 15, 21 and 22, designated RNR1 through RNR5, respectively. Each cluster consists of multiple 45S rDNA repeat units that vary in number among individuals and chromosomes, with total diploid copy number estimates ranging from 60 to >800 repeat units in a human genome. The 45S rDNA repeat unit encodes a 45S rRNA precursor, transcribed by RNA polymerase I, which is processed to form the 18S, 5.8S and 28S rRNAs. Gene and RefSeq, in collaboration with HGNC, currently describe one 45S rDNA cluster, and one set of 45S precursor and product rRNAs, for each of the five human chromosomes to which these loci are localized. This gene represents the 45S ribosomal DNA cluster on chromosome 14. [provided by RefSeq, Feb 2017]

RNR3 Gene

RNA, ribosomal cluster 3

45S ribosomal DNA (rDNA) arrays, or clusters, are present on human chromosomes 13, 14, 15, 21 and 22, designated RNR1 through RNR5, respectively. Each cluster consists of multiple 45S rDNA repeat units that vary in number among individuals and chromosomes, with total diploid copy number estimates ranging from 60 to >800 repeat units in a human genome. The 45S rDNA repeat unit encodes a 45S rRNA precursor, transcribed by RNA polymerase I, which is processed to form the 18S, 5.8S and 28S rRNAs. Gene and RefSeq, in collaboration with HGNC, currently describe one 45S rDNA cluster, and one set of 45S precursor and product rRNAs, for each of the five human chromosomes to which these loci are localized. This gene represents the 45S ribosomal DNA cluster on chromosome 15. [provided by RefSeq, Feb 2017]

RNR1 Gene

RNA, ribosomal cluster 1

45S ribosomal DNA (rDNA) arrays, or clusters, are present on human chromosomes 13, 14, 15, 21 and 22, designated RNR1 through RNR5, respectively. Each cluster consists of multiple 45S rDNA repeat units that vary in number among individuals and chromosomes, with total diploid copy number estimates ranging from 60 to >800 repeat units in a human genome. The 45S rDNA repeat unit encodes a 45S rRNA precursor, transcribed by RNA polymerase I, which is processed to form the 18S, 5.8S and 28S rRNAs. Gene and RefSeq, in collaboration with HGNC, currently describe one 45S rDNA cluster, and one set of 45S precursor and product rRNAs, for each of the five human chromosomes to which these loci are localized. This gene represents the 45S ribosomal DNA cluster on chromosome 13. [provided by RefSeq, Feb 2017]

RNR4 Gene

RNA, ribosomal cluster 4

45S ribosomal DNA (rDNA) arrays, or clusters, are present on human chromosomes 13, 14, 15, 21 and 22, designated RNR1 through RNR5, respectively. Each cluster consists of multiple 45S rDNA repeat units that vary in number among individuals and chromosomes, with total diploid copy number estimates ranging from 60 to >800 repeat units in a human genome. The 45S rDNA repeat unit encodes a 45S rRNA precursor, transcribed by RNA polymerase I, which is processed to form the 18S, 5.8S and 28S rRNAs. Gene and RefSeq, in collaboration with HGNC, currently describe one 45S rDNA cluster, and one set of 45S precursor and product rRNAs, for each of the five human chromosomes to which these loci are localized. This gene represents the 45S ribosomal DNA cluster on chromosome 21. [provided by RefSeq, Feb 2017]

RNR5 Gene

RNA, ribosomal cluster 5

45S ribosomal DNA (rDNA) arrays, or clusters, are present on human chromosomes 13, 14, 15, 21 and 22, designated RNR1 through RNR5, respectively. Each cluster consists of multiple 45S rDNA repeat units that vary in number among individuals and chromosomes, with total diploid copy number estimates ranging from 60 to >800 repeat units in a human genome. The 45S rDNA repeat unit encodes a 45S rRNA precursor, transcribed by RNA polymerase I, which is processed to form the 18S, 5.8S and 28S rRNAs. Gene and RefSeq, in collaboration with HGNC, currently describe one 45S rDNA cluster, and one set of 45S precursor and product rRNAs, for each of the five human chromosomes to which these loci are localized. This gene represents the 45S ribosomal DNA cluster on chromosome 22. [provided by RefSeq, Feb 2017]

TRK-TTT7-1 Gene

transfer RNA-Lys (TTT) 7-1

PIRC19 Gene

piwi-interacting RNA cluster 19

PIRC18 Gene

piwi-interacting RNA cluster 18

PIRC15 Gene

piwi-interacting RNA cluster 15

PIRC14 Gene

piwi-interacting RNA cluster 14

PIRC17 Gene

piwi-interacting RNA cluster 17

PIRC16 Gene

piwi-interacting RNA cluster 16

PIRC11 Gene

piwi-interacting RNA cluster 11

PIRC10 Gene

piwi-interacting RNA cluster 10

PIRC13 Gene

piwi-interacting RNA cluster 13

PIRC12 Gene

piwi-interacting RNA cluster 12

STARD4-AS1 Gene

STARD4 antisense RNA 1

SNORD12C Gene

small nucleolar RNA, C/D box 12C

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD12B Gene

small nucleolar RNA, C/D box 12B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LRRC75A-AS1 Gene

LRRC75A antisense RNA 1

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD123 Gene

small nucleolar RNA, C/D box 123

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD127 Gene

small nucleolar RNA, C/D box 127

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD124 Gene

small nucleolar RNA, C/D box 124

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP102 Gene

RNA, 5S ribosomal pseudogene 102

LINC01327 Gene

long intergenic non-protein coding RNA 1327

LINC01324 Gene

long intergenic non-protein coding RNA 1324

LINC01322 Gene

long intergenic non-protein coding RNA 1322

LINC01320 Gene

long intergenic non-protein coding RNA 1320

DLGAP1-AS2 Gene

DLGAP1 antisense RNA 2

Biomarker of hepatocellular carcinoma. [provided by Alliance of Genome Resources, Mar 2025]

DLGAP1-AS3 Gene

DLGAP1 antisense RNA 3

DLGAP1-AS4 Gene

DLGAP1 antisense RNA 4

DLGAP1-AS5 Gene

DLGAP1 antisense RNA 5

TRR-CCG1-1 Gene

transfer RNA-Arg (CCG) 1-1

RNU7-62P Gene

RNA, U7 small nuclear 62 pseudogene

PAXIP1-AS1 Gene

PAXIP1 antisense RNA 1 (head to head)

PAXIP1-AS2 Gene

PAXIP1 antisense RNA 2

TTC39A-AS1 Gene

TTC39A antisense RNA 1

Predicted to enable chromatin binding activity; ribonucleoprotein complex binding activity; and transcription cis-regulatory region binding activity. Predicted to act upstream of or within with a negative effect on inflammatory response and transcription by RNA polymerase II. Predicted to act upstream of or within gene expression; nucleosome organization; and response to lipopolysaccharide. [provided by Alliance of Genome Resources, Mar 2025]

SSSCA1-AS1 Gene

SSSCA1 antisense RNA 1 (head to head)

TAPT1-AS1 Gene

TAPT1 antisense RNA 1 (head to head)

ZFAT-AS1 Gene

ZFAT antisense RNA 1

This gene encodes a small antisense RNA that may be involved in regulating the sense strand locus, zinc finger and AT hook domain containing. This RNA may play a role in B cell function. A single nucleotide polymorphism in the promoter of this gene is associated with an increased risk of autoimmune thyroid disease.[provided by RefSeq, Jan 2010]

RASGRF2-AS1 Gene

RASGRF2 antisense RNA 1

RNU6-79P Gene

RNA, U6 small nuclear 79, pseudogene

TRA-TGC10-1 Gene

transfer RNA-Ala (TGC) 10-1

TRNAH-GUG Gene

transfer RNA histidine(anticodon GUG)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TRSUP-TTA1-1 Gene

transfer RNA suppressor (TTA) 1-1

ROR1-AS1 Gene

ROR1 antisense RNA 1

BSN-AS2 Gene

BSN antisense RNA 2 (head to head)

TTLL10-AS1 Gene

TTLL10 antisense RNA 1

TRL-CAG1-6 Gene

transfer RNA-Leu (CAG) 1-6

TRL-CAG1-7 Gene

transfer RNA-Leu (CAG) 1-7

TRL-CAG1-4 Gene

transfer RNA-Leu (CAG) 1-4

TRL-CAG1-5 Gene

transfer RNA-Leu (CAG) 1-5

TRL-CAG1-2 Gene

transfer RNA-Leu (CAG) 1-2

TRL-CAG1-3 Gene

transfer RNA-Leu (CAG) 1-3

TRL-CAG1-1 Gene

transfer RNA-Leu (CAG) 1-1

RPAP2 Gene

RNA polymerase II associated protein 2

Enables RNA polymerase II CTD heptapeptide repeat phosphatase activity. Involved in PERK-mediated unfolded protein response and snRNA transcription. Located in cytosol and nucleolus. Part of transcription preinitiation complex. [provided by Alliance of Genome Resources, Mar 2025]

TRNAY-GUA Gene

transfer RNA tyrosine (anticodon GUA)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

RNU4-7P Gene

RNA, U4 small nuclear 7, pseudogene

MYO16-AS2 Gene

MYO16 antisense RNA 2

TRA-AGC10-1 Gene

transfer RNA-Ala (AGC) 10-1

TRT-AGT4-1 Gene

transfer RNA-Thr (AGT) 4-1

TRR-TCT1-1 Gene

transfer RNA-Arg (TCT) 1-1

RNU6-8 Gene

RNA, U6 small nuclear 8

Predicted to enable U4 snRNA binding activity. Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4/U6 x U5 tri-snRNP complex and U6 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNU6-9 Gene

RNA, U6 small nuclear 9

Predicted to enable U4 snRNA binding activity. Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4/U6 x U5 tri-snRNP complex and U6 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNU6-7 Gene

RNA, U6 small nuclear 7

Predicted to enable U4 snRNA binding activity. Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4/U6 x U5 tri-snRNP complex and U6 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNU6-1 Gene

RNA, U6 small nuclear 1

Predicted to enable U4 snRNA binding activity. Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4/U6 x U5 tri-snRNP complex and U6 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNU6-2 Gene

RNA, U6 small nuclear 2

Predicted to enable U4 snRNA binding activity. Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4/U6 x U5 tri-snRNP complex and U6 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

TRN-GTT9-2 Gene

transfer RNA-Asn (GTT) 9-2

SMAD5-AS1 Gene

SMAD5 antisense RNA 1

Enables miRNA inhibitor activity via base-pairing. Involved in lncRNA-mediated post-transcriptional gene silencing and positive regulation of BMP signaling pathway. [provided by Alliance of Genome Resources, Mar 2025]

CACTIN-AS1 Gene

CACTIN antisense RNA 1

SRRM2-AS1 Gene

SRRM2 antisense RNA 1

DPYD-AS1 Gene

DPYD antisense RNA 1

DPYD-AS2 Gene

DPYD antisense RNA 2

TRS-TGA1-1 Gene

transfer RNA-Ser (TGA) 1-1

TRQ-CTG9-1 Gene

transfer RNA-Gln (CTG) 9-1

LINC00433 Gene

long intergenic non-protein coding RNA 433

TRR-TCT4-1 Gene

transfer RNA-Arg (TCT) 4-1

RNASEH1-AS1 Gene

RNASEH1 antisense RNA 1

GPC5-AS1 Gene

GPC5 antisense RNA 1

NIPBL-AS1 Gene

NIPBL antisense RNA 1 (head to head)

LINC01424 Gene

long intergenic non-protein coding RNA 1424

LINC01425 Gene

long intergenic non-protein coding RNA 1425

LINC01426 Gene

long intergenic non-protein coding RNA 1426

LINC01427 Gene

long intergenic non-protein coding RNA 1427

LINC01420 Gene

long intergenic non-protein coding RNA 1420

Involved in negative regulation of cytoplasmic mRNA processing body assembly and nuclear-transcribed mRNA catabolic process. Located in P-body. [provided by Alliance of Genome Resources, Mar 2025]

LINC01422 Gene

long intergenic non-protein coding RNA 1422

LINC01423 Gene

long intergenic non-protein coding RNA 1423

LINC01428 Gene

long intergenic non-protein coding RNA 1428

ZFY-AS1 Gene

ZFY antisense RNA 1

LINC01280 Gene

long intergenic non-protein coding RNA 1280

LINC01281 Gene

long intergenic non-protein coding RNA 1281

LINC01282 Gene

long intergenic non-protein coding RNA 1282

LINC01284 Gene

long intergenic non-protein coding RNA 1284

LINC01285 Gene

long intergenic non-protein coding RNA 1285

LINC01287 Gene

long intergenic non-protein coding RNA 1287

LINC01288 Gene

long intergenic non-protein coding RNA 1288

LINC01289 Gene

long intergenic non-protein coding RNA 1289

WWC3-AS1 Gene

WWC3 antisense RNA 1

LINC00488 Gene

long intergenic non-protein coding RNA 488

LINC00484 Gene

long intergenic non-protein coding RNA 484

LINC00487 Gene

long intergenic non-protein coding RNA 487

LINC00486 Gene

long intergenic non-protein coding RNA 486

LINC00483 Gene

long intergenic non-protein coding RNA 483

LINC00482 Gene

long intergenic non-protein coding RNA 482

VAC14-AS1 Gene

VAC14 antisense RNA 1

SEPSECS-AS1 Gene

SEPSECS antisense RNA 1 (head to head)

TRK-TTT3-1 Gene

transfer RNA-Lys (TTT) 3-1

TRK-TTT3-2 Gene

transfer RNA-Lys (TTT) 3-2

TRK-TTT3-3 Gene

transfer RNA-Lys (TTT) 3-3

TRK-TTT3-4 Gene

transfer RNA-Lys (TTT) 3-4

DNAJB8-AS1 Gene

DNAJB8 antisense RNA 1

PAQR9-AS1 Gene

PAQR9 antisense RNA 1

TRQ-CTG15-1 Gene

transfer RNA-Gln (CTG) 15-1

TRM-CAT2-1 Gene

transfer RNA-Met (CAT) 2-1

USP12-AS2 Gene

USP12 antisense RNA 2 (head to head)

RNU6-69P Gene

RNA, U6 small nuclear 69, pseudogene

LINC00266-4P Gene

long intergenic non-protein coding RNA 266-4, pseudogene

EGFLAM-AS3 Gene

EGFLAM antisense RNA 3

SNORA9 Gene

small nucleolar RNA, H/ACA box 9

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA8 Gene

small nucleolar RNA, H/ACA box 8

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA1 Gene

small nucleolar RNA, H/ACA box 1

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA4 Gene

small nucleolar RNA, H/ACA box 4

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA6 Gene

small nucleolar RNA, H/ACA box 6

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

ARHGEF3-AS1 Gene

ARHGEF3 antisense RNA 1

EXTL3-AS1 Gene

EXTL3 antisense RNA 1

RBM17P4 Gene

RNA binding motif protein 17 pseudogene 4

RBM17P2 Gene

RNA binding motif protein 17 pseudogene 2

RBM17P3 Gene

RNA binding motif protein 17 pseudogene 3

RBM17P1 Gene

RNA binding motif protein 17 pseudogene 1

NFIA-AS2 Gene

NFIA antisense RNA 2

ZNF30-AS1 Gene

ZNF30 antisense RNA 1

RNU1-20P Gene

RNA, U1 small nuclear 20, pseudogene

IBA57-AS1 Gene

IBA57 antisense RNA 1 (head to head)

DRAIC Gene

downregulated RNA in cancer, inhibitor of cell invasion and migration

HAND2-AS1 Gene

HAND2 antisense RNA 1 (head to head)

Predicted to be involved in positive regulation of gene expression. Predicted to act upstream of or within with a positive effect on cardiac right ventricle morphogenesis. Predicted to act upstream of or within transcription elongation by RNA polymerase II. Predicted to be located in chromatin; cytoplasm; and nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

KLHL6-AS1 Gene

KLHL6 antisense RNA 1

RRP1 Gene

ribosomal RNA processing 1

The protein encoded by this gene is the putative homolog of the yeast ribosomal RNA processing protein RRP1. The encoded protein is involved in the late stages of nucleologenesis at the end of mitosis, and may be required for the generation of 28S rRNA. [provided by RefSeq, Jul 2008]

RRP8 Gene

ribosomal RNA processing 8, methyltransferase, homolog (yeast)

Enables methylated histone binding activity. Involved in several processes, including cellular response to glucose starvation; intrinsic apoptotic signaling pathway by p53 class mediator; and regulation of gene expression. Acts upstream of with a negative effect on regulation of G1 to G0 transition. Located in several cellular components, including cytosol; nuclear lumen; and rDNA heterochromatin. Part of eNoSc complex. [provided by Alliance of Genome Resources, Mar 2025]

RRP9 Gene

ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)

This gene encodes a member of the WD-repeat protein family. The encoded protein is a component of the nucleolar small nuclear ribonucleoprotein particle (snoRNP) and is essential for 18s rRNA processing during ribosome synthesis. It contains seven WD domains required for nucleolar localization and specific interaction with the U3 small nucleolar RNA (U3 snoRNA). [provided by RefSeq, Oct 2012]

HOTAIRM1 Gene

HOXA transcript antisense RNA, myeloid-specific 1

This non-coding locus is located in the HOX gene cluster. Transcription of this locus is induced by retinoic acid, and transcripts likely function in regulation of myelopoiesis through transcriptional activation of several genes in the HOXA cluster, in addition to several beta-2 integrins. [provided by RefSeq, Jan 2013]

RBMY2GP Gene

RNA binding motif protein, Y-linked, family 2, member G pseudogene

TRY-GTA10-1 Gene

transfer RNA-Tyr (GTA) 10-1

ITPR1-AS1 Gene

ITPR1 antisense RNA 1 (head to head)

DBR1 Gene

debranching RNA lariats 1

The protein encoded by this gene is an RNA lariat debranching enzyme that hydrolyzes 2'-5' prime branched phosphodiester bonds. The encoded protein specifically targets the bonds at the branch point of excised lariat intron RNA, converting them to linear molecules that are then degraded. This protein may also be involved in retroviral replication. [provided by RefSeq, Nov 2011]

LYST-AS1 Gene

LYST antisense RNA 1

NDP-AS1 Gene

NDP antisense RNA 1

RNU7-47P Gene

RNA, U7 small nuclear 47 pseudogene

TRNAL-UAG Gene

transfer RNA leucine (anticodon UAG)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

ADGRL3-AS1 Gene

adhesion G protein-coupled receptor L3 antisense RNA 1

LINC01363 Gene

long intergenic non-protein coding RNA 1363

TRR-TCG1-1 Gene

transfer RNA-Arg (TCG) 1-1

RBM26 Gene

RNA binding motif protein 26

Enables RNA binding activity. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

RBM27 Gene

RNA binding motif protein 27

Enables RNA binding activity. Predicted to be located in cytoplasm and nuclear speck. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

RBM24 Gene

RNA binding motif protein 24

Enables mRNA 3'-UTR AU-rich region binding activity; mRNA CDS binding activity; and sequence-specific mRNA binding activity. Involved in several processes, including negative regulation of cytoplasmic translation; positive regulation of cell differentiation; and regulation of mRNA metabolic process. Located in cytosol and nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

RBM25 Gene

RNA binding motif protein 25

Enables mRNA binding activity. Involved in regulation of alternative mRNA splicing, via spliceosome and regulation of apoptotic process. Located in nuclear speck. [provided by Alliance of Genome Resources, Mar 2025]

RBM22 Gene

RNA binding motif protein 22

This gene encodes an RNA binding protein. The encoded protein may play a role in cell division and may be involved in pre-mRNA splicing. Related pseudogenes exist on chromosomes 6, 7, 9, 13, 16, 18, and X. [provided by RefSeq, Mar 2009]

RBM23 Gene

RNA binding motif protein 23

This gene encodes a member of the U2AF-like family of RNA binding proteins. This protein interacts with some steroid nuclear receptors, localizes to the promoter of a steroid- responsive gene, and increases transcription of steroid-responsive transcriptional reporters in a hormone-dependent manner. It is also implicated in the steroid receptor-dependent regulation of alternative splicing. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

RBM20 Gene

RNA binding motif protein 20

This gene encodes a protein that binds RNA and regulates splicing. Mutations in this gene have been associated with familial dilated cardiomyopathy. [provided by RefSeq, Apr 2014]

RBM28 Gene

RNA binding motif protein 28

The protein encoded by this gene is a specific nucleolar component of the spliceosomal small nuclear ribonucleoprotein (snRNP)complexes . It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), possibly coordinating their transition through the nucleolus. Mutation in this gene causes alopecia, progressive neurological defects, and endocrinopathy (ANE syndrome), a pleiotropic and clinically heterogeneous disorder. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2009]

TRA-AGC1-1 Gene

transfer RNA-Ala (AGC) 1-1

RNU7-86P Gene

RNA, U7 small nuclear 86 pseudogene

SNORD121B Gene

small nucleolar RNA, C/D box 121B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD121A Gene

small nucleolar RNA, C/D box 121A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRR-TCT5-1 Gene

transfer RNA-Arg (TCT) 5-1

RAD51-AS1 Gene

RAD51 antisense RNA 1 (head to head)

PIRC96 Gene

piwi-interacting RNA cluster 96

PIRC91 Gene

piwi-interacting RNA cluster 91

LMCD1-AS1 Gene

LMCD1 antisense RNA 1 (head to head)

TRR-CCT1-1 Gene

transfer RNA-Arg (CCT) 1-1

PLS1-AS1 Gene

PLS1 antisense RNA 1

RNU7-13P Gene

RNA, U7 small nuclear 13 pseudogene

LINC00526 Gene

long intergenic non-protein coding RNA 526

LINC00527 Gene

long intergenic non-protein coding RNA 527

LINC00524 Gene

long intergenic non-protein coding RNA 524

LINC00525 Gene

long intergenic non-protein coding RNA 525

LINC00523 Gene

long intergenic non-protein coding RNA 523

LINC00520 Gene

long intergenic non-protein coding RNA 520

LINC00521 Gene

long intergenic non-protein coding RNA 521

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

LINC00528 Gene

long intergenic non-protein coding RNA 528

LINC00529 Gene

long intergenic non-protein coding RNA 529

RNU6-36P Gene

RNA, U6 small nuclear 36, pseudogene

RNA5SP235 Gene

RNA, 5S ribosomal pseudogene 235

ATP13A5-AS1 Gene

ATP13A5 antisense RNA 1

TRQ-CTG14-1 Gene

transfer RNA-Gln (CTG) 14-1

DARS-AS1 Gene

DARS antisense RNA 1

SYNPR-AS1 Gene

SYNPR antisense RNA 1

REXO1L6P Gene

REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 6, pseudogene

TRM-CAT3-2 Gene

transfer RNA-Met (CAT) 3-2

TRM-CAT3-1 Gene

transfer RNA-Met (CAT) 3-1

CLDN10-AS1 Gene

CLDN10 antisense RNA 1

RNA5SP167 Gene

RNA, 5S ribosomal pseudogene 167

RNA5SP481 Gene

RNA, 5S ribosomal pseudogene 481

LINC01499 Gene

long intergenic non-protein coding RNA 1499

RNU4ATAC2P Gene

RNA, U4atac small nuclear 2, pseudogene

NRDE2 Gene

NRDE-2, necessary for RNA interference, domain containing

Involved in several processes, including RNA splicing; mRNA stabilization; and positive regulation of RNA export from nucleus. Located in nuclear speck and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP249 Gene

RNA, 5S ribosomal pseudogene 249

RNA5SP246 Gene

RNA, 5S ribosomal pseudogene 246

RNA5SP247 Gene

RNA, 5S ribosomal pseudogene 247

RNA5SP244 Gene

RNA, 5S ribosomal pseudogene 244

RNA5SP245 Gene

RNA, 5S ribosomal pseudogene 245

RNA5SP242 Gene

RNA, 5S ribosomal pseudogene 242

RNA5SP240 Gene

RNA, 5S ribosomal pseudogene 240

RNA5SP241 Gene

RNA, 5S ribosomal pseudogene 241

USP3-AS1 Gene

USP3 antisense RNA 1

PPP1R26-AS1 Gene

PPP1R26 antisense RNA 1

RBMS1P1 Gene

RNA binding motif, single stranded interacting protein 1 pseudogene 1

TSIX Gene

TSIX transcript, XIST antisense RNA

In mammals, dosage compensation of genes on the X chromosome occurs by X inactivation, which is regulated in cis by the X-inactivation center (XIC) and expression of the XIST non-coding RNA. This gene expresses a non-coding antisense transcript across the 3' end of the XIST locus, and is coexpressed with XIST only from the inactive X chromosome. The mouse ortholog of this locus is required for imprinted X inactivation in extraembryonic tissues and silences Xist through modification of the chromatin structure in the Xist promoter region. In contrast, imprinted X inactivation does not occur in human extraembryonic tissues and transcripts from this locus do not repress XIST expression or affect random X chromosome inactivation in embryonic cells. This transcript is thought to be unspliced and extend over more than 30 kb, but its exact nature has not been determined. [provided by RefSeq, Jul 2008]

TRM-CAT6-1 Gene

transfer RNA-Met (CAT) 6-1

RNU6-64P Gene

RNA, U6 small nuclear 64, pseudogene

TRV-CAC5-1 Gene

transfer RNA-Val (CAC) 5-1

OLMALINC Gene

oligodendrocyte maturation-associated long intergenic non-coding RNA

FSIP2-AS1 Gene

FSIP2 antisense RNA 1

TRH-GTG1-7 Gene

transfer RNA-His (GTG) 1-7

TRH-GTG1-6 Gene

transfer RNA-His (GTG) 1-6

TRH-GTG1-5 Gene

transfer RNA-His (GTG) 1-5

TRH-GTG1-4 Gene

transfer RNA-His (GTG) 1-4

TRH-GTG1-1 Gene

transfer RNA-His (GTG) 1-1

BMP7-AS1 Gene

BMP7 antisense RNA 1

C20ORF166-AS1 Gene

C20orf166 antisense RNA 1

LINC00200 Gene

long intergenic non-protein coding RNA 200

ERICH3-AS1 Gene

ERICH3 antisense RNA 1

LINC00207 Gene

long intergenic non-protein coding RNA 207

LOC100422622 Gene

TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa pseudogene

LOC100422627 Gene

TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa pseudogene

RNA5SP400 Gene

RNA, 5S ribosomal pseudogene 400

HNRNPDP1 Gene

heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) pseudogene 1

CDKN2A-AS1 Gene

CDKN2A antisense RNA 1 (head to head)

LINC00052 Gene

long intergenic non-protein coding RNA 52

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

TRS-CGA3-1 Gene

transfer RNA-Ser (CGA) 3-1

SUCLA2-AS1 Gene

SUCLA2 antisense RNA 1

PIRC105 Gene

piwi-interacting RNA cluster 105

PCED1B-AS1 Gene

PCED1B antisense RNA 1

TRE-CTC8-1 Gene

transfer RNA-Glu (CTC) 8-1

LINC00165 Gene

long intergenic non-protein coding RNA 165

TRNAR-UCU Gene

transfer RNA arginine (anticodon UCU)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TRF-GAA12-1 Gene

transfer RNA-Phe (GAA) 12-1

LINC01252 Gene

long intergenic non-protein coding RNA 1252

TRNAR-UCG Gene

transfer RNA arginine (anticodon UCG)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TRF-GAA8-1 Gene

transfer RNA-Phe (GAA) 8-1

LINC01256 Gene

long intergenic non-protein coding RNA 1256

LINC01254 Gene

long intergenic non-protein coding RNA 1254

LINC01258 Gene

long intergenic non-protein coding RNA 1258

LOC100506431 Gene

B2 RNA

SDCBP2-AS1 Gene

SDCBP2 antisense RNA 1

TRI-TAT1-1 Gene

transfer RNA-Ile (TAT) 1-1

EXOC3-AS1 Gene

EXOC3 antisense RNA 1

Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Mar 2025]

LINC01590 Gene

long intergenic non-protein coding RNA 1590

LINC01591 Gene

long intergenic non-protein coding RNA 1591

LINC01592 Gene

long intergenic non-protein coding RNA 1592

LINC01594 Gene

long intergenic non-protein coding RNA 1594

LINC01599 Gene

long intergenic non-protein coding RNA 1599

LMF1-AS1 Gene

LMF1 antisense RNA 1

LINC01046 Gene

long intergenic non-protein coding RNA 1046

LINC01047 Gene

long intergenic non-protein coding RNA 1047

LINC01044 Gene

long intergenic non-protein coding RNA 1044

LINC01043 Gene

long intergenic non-protein coding RNA 1043

LINC01040 Gene

long intergenic non-protein coding RNA 1040

LINC01049 Gene

long intergenic non-protein coding RNA 1049

TRI-AAT4-1 Gene

transfer RNA-Ile (AAT) 4-1

FLG-AS1 Gene

FLG antisense RNA 1

TRE-TTC3-1 Gene

transfer RNA-Glu (TTC) 3-1

IFNG-AS1 Gene

IFNG antisense RNA 1

LINC00311 Gene

long intergenic non-protein coding RNA 311

LINC00310 Gene

long intergenic non-protein coding RNA 310

LINC00313 Gene

long intergenic non-protein coding RNA 313

LINC00312 Gene

long intergenic non-protein coding RNA 312

This gene produces an intronless transcript that is thought to function as a tumor suppressor. This transcript is downregulated in nasopharyngeal carcinoma and is a negative regulator of estrogen receptor signaling. A common polymorphism in this transcript allows the production of a 94 aa open reading frame in some individuals, which may interact directly with estrogen receptor 1 (PMID:15474036). This open reading frame does not exist on the reference genome haplotype, which is hypothesized to function through a non-coding RNA product. [provided by RefSeq, Mar 2017]

LINC00315 Gene

long intergenic non-protein coding RNA 315

LINC00314 Gene

long intergenic non-protein coding RNA 314

LINC00316 Gene

long intergenic non-protein coding RNA 316

POLR3GP2 Gene

polymerase (RNA) III (DNA directed) polypeptide G (32kD) pseudogene 2

TRL-TAA1-1 Gene

transfer RNA-Leu (TAA) 1-1

POLR3GP1 Gene

polymerase (RNA) III (DNA directed) polypeptide G (32kD) pseudogene 1

OSBPL10-AS1 Gene

OSBPL10 antisense RNA 1

RRN3P3 Gene

RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 3

RRN3P2 Gene

RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2

Predicted to enable RNA polymerase I core binding activity and RNA polymerase I general transcription initiation factor activity. Predicted to be involved in transcription initiation at RNA polymerase I promoter. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

RRN3P1 Gene

RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1

Predicted to enable RNA polymerase I general transcription initiation factor activity. Predicted to be involved in transcription initiation at RNA polymerase I promoter. [provided by Alliance of Genome Resources, Mar 2025]

TRR-ACG1-1 Gene

transfer RNA-Arg (ACG) 1-1

TRR-ACG1-2 Gene

transfer RNA-Arg (ACG) 1-2

FANK1-AS1 Gene

FANK1 antisense RNA 1

DLX6-AS1 Gene

DLX6 antisense RNA 1

Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

DLX6-AS2 Gene

DLX6 antisense RNA 2

RNY3P6 Gene

RNA, Ro-associated Y3 pseudogene 6

RNY3P7 Gene

RNA, Ro-associated Y3 pseudogene 7

RNY3P4 Gene

RNA, Ro-associated Y3 pseudogene 4

RNY3P5 Gene

RNA, Ro-associated Y3 pseudogene 5

RNY3P2 Gene

RNA, Ro-associated Y3 pseudogene 2

RNY3P3 Gene

RNA, Ro-associated Y3 pseudogene 3

UBTF Gene

upstream binding transcription factor, RNA polymerase I

This gene encodes a member of the HMG-box DNA-binding protein family. The encoded protein plays a critical role in ribosomal RNA transcription as a key component of the pre-initiation complex, mediating the recruitment of RNA polymerase I to rDNA promoter regions. The encoded protein may also play important roles in chromatin remodeling and pre-rRNA processing, and its activity is regulated by both phosphorylation and acetylation. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. Pseudogenes of this gene are located on the short arm of chromosomes 3, 11 and X and the long arm of chromosome 11. [provided by RefSeq, Aug 2011]

RNY3P9 Gene

RNA, Ro-associated Y3 pseudogene 9

MAPT-AS1 Gene

MAPT antisense RNA 1

Involved in regulatory ncRNA-mediated gene silencing. Implicated in Parkinson's disease. [provided by Alliance of Genome Resources, Mar 2025]

LLPH-AS1 Gene

LLPH antisense RNA 1 (head to head)

ARHGAP26-AS1 Gene

ARHGAP26 antisense RNA 1

LINCMD1 Gene

long intergenic non-protein coding RNA, muscle differentiation 1

TRK-CTT13-1 Gene

transfer RNA-Lys (CTT) 13-1

RNA5SP229 Gene

RNA, 5S ribosomal pseudogene 229

ZSWIM8-AS1 Gene

ZSWIM8 antisense RNA 1

TMC3-AS1 Gene

TMC3 antisense RNA 1

ZFR2 Gene

zinc finger RNA binding protein 2

Predicted to enable double-stranded RNA binding activity and single-stranded RNA binding activity. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP225 Gene

RNA, 5S ribosomal pseudogene 225

RNU5B-5P Gene

RNA, U5B small nuclear 5, pseudogene

LINC-ROR Gene

long intergenic non-protein coding RNA, regulator of reprogramming

This gene produces a long non-coding RNA that regulates the reprogramming of pluripotent stem cells. This RNA suppresses induction of tumor protein p53 after DNA damage. It is thought to act as a sponge for microRNAs that regulate stem cell factors POU class 5 homeobox 1, Nanog, and SRY-box 2. This RNA may also have a extracellular role in modulating response to hypoxia in hepatocellular cancer cells. Expression of this transcript is associated with tumor progression and epithelial to mesenchymal transition and metastasis. [provided by RefSeq, Dec 2017]

LINC00571 Gene

long intergenic non-protein coding RNA 571

TRV-CAC1-1 Gene

transfer RNA-Val (CAC) 1-1

TRV-CAC1-2 Gene

transfer RNA-Val (CAC) 1-2

TRV-CAC1-3 Gene

transfer RNA-Val (CAC) 1-3

TRV-CAC1-5 Gene

transfer RNA-Val (CAC) 1-5

TRV-CAC1-6 Gene

transfer RNA-Val (CAC) 1-6

LINC01209 Gene

long intergenic non-protein coding RNA 1209

LINC01201 Gene

long intergenic non-protein coding RNA 1201

LINC01202 Gene

long intergenic non-protein coding RNA 1202

LINC01203 Gene

long intergenic non-protein coding RNA 1203

LINC01204 Gene

long intergenic non-protein coding RNA 1204

LINC01205 Gene

long intergenic non-protein coding RNA 1205

LINC01206 Gene

long intergenic non-protein coding RNA 1206

LINC01207 Gene

long intergenic non-protein coding RNA 1207

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

RNU6-63P Gene

RNA, U6 small nuclear 63, pseudogene

SNORA74A Gene

small nucleolar RNA, H/ACA box 74A

Predicted to be involved in RNA processing. Part of box H/ACA RNP complex. [provided by Alliance of Genome Resources, Mar 2025]

SNORA74B Gene

small nucleolar RNA, H/ACA box 74B

Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SNORA74B, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]

MAST4-AS1 Gene

MAST4 antisense RNA 1

RNU7-54P Gene

RNA, U7 small nuclear 54 pseudogene

RNU5A-2P Gene

RNA, U5A small nuclear 2, pseudogene

OTUD6B-AS1 Gene

OTUD6B antisense RNA 1 (head to head)

SNORD115-43 Gene

small nucleolar RNA, C/D box 115-43

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-41 Gene

small nucleolar RNA, C/D box 115-41

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-47 Gene

small nucleolar RNA, C/D box 115-47

KLF3-AS1 Gene

KLF3 antisense RNA 1

SNORD1A Gene

small nucleolar RNA, C/D box 1A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD1B Gene

small nucleolar RNA, C/D box 1B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD1C Gene

small nucleolar RNA, C/D box 1C

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LANCL1-AS1 Gene

LANCL1 antisense RNA 1

SNORD16 Gene

small nucleolar RNA, C/D box 16

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD10 Gene

small nucleolar RNA, C/D box 10

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD11 Gene

small nucleolar RNA, C/D box 11

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD19 Gene

small nucleolar RNA, C/D box 19

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

MCM8-AS1 Gene

MCM8 antisense RNA 1

TRS-AGA7-1 Gene

transfer RNA-Ser (AGA) 7-1

CYYR1-AS1 Gene

cysteine/tyrosine-rich 1 antisense RNA 1

TRE-TTC2-1 Gene

transfer RNA-Glu (TTC) 2-1

GCC2-AS1 Gene

GCC2 antisense RNA 1

TRI-AAT5-2 Gene

transfer RNA-Ile (AAT) 5-2

TRI-AAT5-3 Gene

transfer RNA-Ile (AAT) 5-3

TRI-AAT5-1 Gene

transfer RNA-Ile (AAT) 5-1

TRI-AAT5-4 Gene

transfer RNA-Ile (AAT) 5-4

TRI-AAT5-5 Gene

transfer RNA-Ile (AAT) 5-5

PEG3-AS1 Gene

PEG3 antisense RNA 1

This gene is located in the paternally expressed gene 3 (PEG3) imprinted region on chromosome 19. The corresponding transcript in mouse is imprinted and regulates expression of the mouse Peg3 gene. [provided by RefSeq, Sep 2016]

LINC01452 Gene

long intergenic non-protein coding RNA 1452

RBMY2OP Gene

RNA binding motif protein, Y-linked, family 2, member O pseudogene

ACVR2B-AS1 Gene

ACVR2B antisense RNA 1

TRNAA-CGC Gene

transfer RNA alanine (anticodon CGC)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

PTGES2-AS1 Gene

PTGES2 antisense RNA 1 (head to head)

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP54 Gene

RNA, 5S ribosomal pseudogene 54

RNA5SP55 Gene

RNA, 5S ribosomal pseudogene 55

RNA5SP56 Gene

RNA, 5S ribosomal pseudogene 56

RNA5SP51 Gene

RNA, 5S ribosomal pseudogene 51

RNA5SP52 Gene

RNA, 5S ribosomal pseudogene 52

RNA5SP53 Gene

RNA, 5S ribosomal pseudogene 53

POLR2CP Gene

polymerase (RNA) II (DNA directed) polypeptide C, pseudogene

PIK3IP1-AS1 Gene

PIK3IP1 antisense RNA 1 (head to head)

UFL1-AS1 Gene

UFL1 antisense RNA 1

VPS9D1-AS1 Gene

VPS9D1 antisense RNA 1

RNU7-32P Gene

RNA, U7 small nuclear 32 pseudogene

ADARB2 Gene

adenosine deaminase, RNA-specific, B2 (non-functional)

This gene encodes a member of the double-stranded RNA adenosine deaminase family of RNA-editing enzymes and may play a regulatory role in RNA editing. [provided by RefSeq, Jul 2008]

ADARB1 Gene

adenosine deaminase, RNA-specific, B1

This gene encodes the enzyme responsible for pre-mRNA editing of the glutamate receptor subunit B by site-specific deamination of adenosines. Studies in rat found that this enzyme acted on its own pre-mRNA molecules to convert an AA dinucleotide to an AI dinucleotide which resulted in a new splice site. Alternative splicing of this gene results in several transcript variants, some of which have been characterized by the presence or absence of an ALU cassette insert and a short or long C-terminal region. [provided by RefSeq, Jul 2008]

RNA5SP378 Gene

RNA, 5S ribosomal pseudogene 378

RNA5SP372 Gene

RNA, 5S ribosomal pseudogene 372

RNA5SP373 Gene

RNA, 5S ribosomal pseudogene 373

RNA5SP371 Gene

RNA, 5S ribosomal pseudogene 371

RNA5SP374 Gene

RNA, 5S ribosomal pseudogene 374

RNA5SP375 Gene

RNA, 5S ribosomal pseudogene 375

TRNAR-CCU Gene

transfer RNA arginine (anticodon CCU)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

SNORD43 Gene

small nucleolar RNA, C/D box 43

Intronic regions of ribosomal protein genes can harbor noncoding small nucleolar RNAs (snoRNAs), like SNORD43, which are generated during pre-mRNA processing. snoRNAs form part of the small nucleolar ribonucleoprotein particles (snoRNPs) involved in pre-rRNA processing and modification. snoRNAs of the box C/D class, like SNORD43, function in 2-prime-O-ribose methylation of rRNAs (Duga et al., 2000 [PubMed 10684968]).[supplied by OMIM, Mar 2008]

TRNAR-CCG Gene

transfer RNA arginine (anticodon CCG)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

SNORD46 Gene

small nucleolar RNA, C/D box 46

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TBX2-AS1 Gene

TBX2 antisense RNA 1

AUH Gene

AU RNA binding protein/enoyl-CoA hydratase

This gene encodes bifunctional mitochondrial protein that has both RNA-binding and hydratase activities. The encoded protein is a methylglutaconyl-CoA hydratase that catalyzes the hydration of 3-methylglutaconyl-CoA to 3-hydroxy-3-methyl-glutaryl-CoA, a critical step in the leucine degradation pathway. This protein also binds AU-rich elements (AREs) found in the 3' UTRs of rapidly decaying mRNAs including c-fos, c-myc and granulocyte/ macrophage colony stimulating factor. ARE elements are involved in directing RNA to rapid degradation and deadenylation. This protein is localizes to the mitochondrial matrix and the inner mitochondrial membrane and may be involved in mitochondrial protein synthesis. Mutations in this gene are the cause of 3-methylglutaconic aciduria, type I. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2015]

ZNF793-AS1 Gene

ZNF793 antisense RNA 1 (head to head)

RNA5-8SP5 Gene

RNA, 5.8S ribosomal pseudogene 5

RNA5-8SP4 Gene

RNA, 5.8S ribosomal pseudogene 4

RNA5-8SP6 Gene

RNA, 5.8S ribosomal pseudogene 6

RNA5-8SP3 Gene

RNA, 5.8S ribosomal pseudogene 3

LINC01166 Gene

long intergenic non-protein coding RNA 1166

SEMA6A-AS1 Gene

SEMA6A antisense RNA 1

RNA5SP176 Gene

RNA, 5S ribosomal pseudogene 176

SNORD116-6 Gene

small nucleolar RNA, C/D box 116-6

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SRRT Gene

serrate, RNA effector molecule

Enables mRNA cap binding complex binding activity and protein-macromolecule adaptor activity. Involved in primary miRNA processing. Located in nucleoplasm. Part of ribonucleoprotein complex. [provided by Alliance of Genome Resources, Mar 2025]

PLBD1-AS1 Gene

PLBD1 antisense RNA 1

RNY4P31 Gene

RNA, Ro-associated Y4 pseudogene 31

RNA5SP147 Gene

RNA, 5S ribosomal pseudogene 147

RNA5SP141 Gene

RNA, 5S ribosomal pseudogene 141

COL4A2-AS1 Gene

COL4A2 antisense RNA 1

LINC00415 Gene

long intergenic non-protein coding RNA 415

LINC00411 Gene

long intergenic non-protein coding RNA 411

SNAR-F Gene

small ILF3/NF90-associated RNA F

SNAR-E Gene

small ILF3/NF90-associated RNA E

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNAR-D Gene

small ILF3/NF90-associated RNA D

ALKBH3-AS1 Gene

ALKBH3 antisense RNA 1

DOCK4-AS1 Gene

DOCK4 antisense RNA 1

ZNF32-AS3 Gene

ZNF32 antisense RNA 3

ZNF32-AS2 Gene

ZNF32 antisense RNA 2

ZNF32-AS1 Gene

ZNF32 antisense RNA 1

SLCO4A1-AS1 Gene

SLCO4A1 antisense RNA 1

LENG8-AS1 Gene

LENG8 antisense RNA 1

CCND2-AS1 Gene

CCND2 antisense RNA 1

TRPC7-AS1 Gene

TRPC7 antisense RNA 1

MKX-AS1 Gene

MKX antisense RNA 1

BACE1-AS Gene

BACE1 antisense RNA

This gene encodes an unspliced long non-coding RNA transcribed from the opposite strand to BACE1. The encoded transcript is thought to form an RNA duplex with BACE1 mRNA thereby regulating its expression and is also thought to promote post-transcriptional feed-forward regulation of BACE1. This may lead to increased levels of beta amyloid and increased senile plaque deposition, and therefore may play a role in the pathophysiology of Alzheimer's disease. [provided by RefSeq, Jan 2015]

CADM3-AS1 Gene

CADM3 antisense RNA 1

DDX11-AS1 Gene

DDX11 antisense RNA 1

TRL-CAA6-1 Gene

transfer RNA-Leu (CAA) 6-1

THAP9-AS1 Gene

THAP9 antisense RNA 1

Predicted to act upstream of or within response to wounding. [provided by Alliance of Genome Resources, Mar 2025]

PRKG1-AS1 Gene

PRKG1 antisense RNA 1

UBAC2-AS1 Gene

UBAC2 antisense RNA 1

ZNF667-AS1 Gene

ZNF667 antisense RNA 1 (head to head)

RNU7-33P Gene

RNA, U7 small nuclear 33 pseudogene

TRA-CGC3-1 Gene

transfer RNA-Ala (CGC) 3-1

HLA-F-AS1 Gene

HLA-F antisense RNA 1

ZRANB2-AS1 Gene

ZRANB2 antisense RNA 1

TRY-GTA1-1 Gene

transfer RNA-Tyr (GTA) 1-1

TRE-CTC18-1 Gene

transfer RNA-Glu (CTC) 18-1

RNU5D-2P Gene

RNA, U5D small nuclear 2, pseudogene

SPATA17-AS1 Gene

SPATA17 antisense RNA 1

FAM212B-AS1 Gene

FAM212B antisense RNA 1

SNORA33 Gene

small nucleolar RNA, H/ACA box 33

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA32 Gene

small nucleolar RNA, H/ACA box 32

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA31 Gene

small nucleolar RNA, H/ACA box 31

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. Implicated in brain disease. [provided by Alliance of Genome Resources, Mar 2025]

SNORA30 Gene

small nucleolar RNA, H/ACA box 30

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA35 Gene

small nucleolar RNA, H/ACA box 35

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA34 Gene

small nucleolar RNA, H/ACA box 34

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA38 Gene

small nucleolar RNA, H/ACA box 38

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

KCNMA1-AS1 Gene

KCNMA1 antisense RNA 1

GPC5-AS2 Gene

GPC5 antisense RNA 2

RNA5SP170 Gene

RNA, 5S ribosomal pseudogene 170

ST3GAL6-AS1 Gene

ST3GAL6 antisense RNA 1

LINC01088 Gene

long intergenic non-protein coding RNA 1088

GABRG3-AS1 Gene

GABRG3 antisense RNA 1

LINC01518 Gene

long intergenic non-protein coding RNA 1518

LINC01519 Gene

long intergenic non-protein coding RNA 1519

LINC01516 Gene

long intergenic non-protein coding RNA 1516

RBMY1J Gene

RNA binding motif protein, Y-linked, family 1, member J

This gene encodes a protein containing an RNA-binding motif in the N-terminus and four SRGY (serine, arginine, glycine, tyrosine) boxes in the C-terminus. This protein likely functions as a splicing factor during spermatogenesis. Multiple closely related paralogs of this gene are found in a gene cluster in the AZFb azoospermia factor region of chromosome Y. Most of these related copies are thought to be pseudogenes, though several likely encode functional proteins. [provided by RefSeq, Mar 2016]

LINC00391 Gene

long intergenic non-protein coding RNA 391

LINC00393 Gene

long intergenic non-protein coding RNA 393

LINC00392 Gene

long intergenic non-protein coding RNA 392

LINC00395 Gene

long intergenic non-protein coding RNA 395

LINC00396 Gene

long intergenic non-protein coding RNA 396

LINC00399 Gene

long intergenic non-protein coding RNA 399

LINC00398 Gene

long intergenic non-protein coding RNA 398

TRE-TTC16-1 Gene

transfer RNA-Glu (TTC) 16-1

C1RL-AS1 Gene

C1RL antisense RNA 1

TRL-TAA4-1 Gene

transfer RNA-Leu (TAA) 4-1

DSG1-AS1 Gene

DSG1 antisense RNA 1

CYP17A1-AS1 Gene

CYP17A1 antisense RNA 1

LOC390250 Gene

polymerase (RNA) II (DNA directed) polypeptide E, 25kDa pseudogene

TRP-AGG6-1 Gene

transfer RNA-Pro (AGG) 6-1

RNU6-76P Gene

RNA, U6 small nuclear 76, pseudogene

ZFAS1 Gene

ZNFX1 antisense RNA 1

This gene represents a snoRNA host gene that produces a non-coding RNA. Increased expression or amplification of this locus is associated with cancer progression and metastasis. This transcript regulates expression of genes involved in differentiation. It may act a molecular sponge for microRNAs. Alternatively spliced transcript variants have been observed. [provided by RefSeq, Dec 2017]

TRL-CAA7-1 Gene

transfer RNA-Leu (CAA) 7-1

RNU7-27P Gene

RNA, U7 small nuclear 27 pseudogene

ITPK1-AS1 Gene

ITPK1 antisense RNA 1

GDNF-AS1 Gene

GDNF antisense RNA 1 (head to head)

A2ML1-AS1 Gene

A2ML1 antisense RNA 1

LBX1-AS1 Gene

LBX1 antisense RNA 1 (head to head)

LINC00152 Gene

long intergenic non-protein coding RNA 152

This gene produces a long non-coding RNA that is overexpressed in cancer cells and promotes cell proliferation and epithelial-mesenchymal transition. This RNA may bind enhancer of zeste homolog 2 and participate in the transcriptional silencing of tumor suppressor genes. It may act as a sponge for microRNAs. Alternatively spliced variants have been observed. [provided by RefSeq, Dec 2017]

ST7-AS1 Gene

ST7 antisense RNA 1

ST7-AS2 Gene

ST7 antisense RNA 2

GMDS-AS1 Gene

GMDS antisense RNA 1 (head to head)

LINC00159 Gene

long intergenic non-protein coding RNA 159

LINC00158 Gene

long intergenic non-protein coding RNA 158

SNAPC3 Gene

small nuclear RNA activating complex, polypeptide 3, 50kDa

Predicted to enable RNA polymerase III type 3 promoter sequence-specific DNA binding activity and bent DNA binding activity. Predicted to contribute to RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and core promoter sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Located in nuclear body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNAPC2 Gene

small nuclear RNA activating complex, polypeptide 2, 45kDa

This gene encodes a subunit of the snRNA-activating protein complex which is associated with the TATA box-binding protein. The encoded protein is necessary for RNA polymerase II and III dependent small-nuclear RNA gene transcription. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2009]

SNAPC1 Gene

small nuclear RNA activating complex, polypeptide 1, 43kDa

Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Located in nucleolus and nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

SNAPC5 Gene

small nuclear RNA activating complex, polypeptide 5, 19kDa

This gene encodes a subunit of the small nuclear RNA (snRNA)-activating protein complex that plays a role in the transcription of snRNA genes. This complex binds to the promoters of snRNA genes transcribed by either RNA polymerase II or III and recruits other regulatory factors to activate snRNA gene transcription. The encoded protein may play a role in stabilizing this complex. A pseudogene of this gene has been identified on chromosome 6. [provided by RefSeq, Jul 2016]

SNAPC4 Gene

small nuclear RNA activating complex, polypeptide 4, 190kDa

This gene encodes the largest subunit of the small nuclear RNA-activating protein (SNAP) complex. The encoded protein contains a Myb DNA-binding domain, and is essential for RNA polymerase II and III polymerase transcription from small nuclear RNA promoters. A mutation in this gene is associated with ankylosing spondylitis. [provided by RefSeq, Jul 2016]

TRS-CGA2-1 Gene

transfer RNA-Ser (CGA) 2-1

TRNAE-UUC Gene

transfer RNA glutamic acid (anticodon UUC)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

ARNTL2-AS1 Gene

ARNTL2 antisense RNA 1

LINC00845 Gene

long intergenic non-protein coding RNA 845

LINC00844 Gene

long intergenic non-protein coding RNA 844

LINC00841 Gene

long intergenic non-protein coding RNA 841

LINC00840 Gene

long intergenic non-protein coding RNA 840

LINC00843 Gene

long intergenic non-protein coding RNA 843

LINC00842 Gene

long intergenic non-protein coding RNA 842

TRE-CTC9-1 Gene

transfer RNA-Glu (CTC) 9-1

SNORD98 Gene

small nucleolar RNA, C/D box 98

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD99 Gene

small nucleolar RNA, C/D box 99

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD94 Gene

small nucleolar RNA, C/D box 94

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD95 Gene

small nucleolar RNA, C/D box 95

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD97 Gene

small nucleolar RNA, C/D box 97

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD92 Gene

small nucleolar RNA, C/D box 92

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

ZEB2-AS1 Gene

ZEB2 antisense RNA 1

This gene produces a spliced long non-coding RNA which is a natural antisense transcript corresponding to the 5' UTR of zinc finger E-box binding homeobox 2 (ZEB2). It is thought that this transcript may be involved in the regulation of ZEB2 expression, and may play a role in the progression of bladder cancer. [provided by RefSeq, Aug 2015]

DDX26B-AS1 Gene

DDX26B antisense RNA 1

LRRC3-AS1 Gene

LRRC3 antisense RNA 1 (head to head)

RNA5SP60 Gene

RNA, 5S ribosomal pseudogene 60

LINC01495 Gene

long intergenic non-protein coding RNA 1495

LINC01494 Gene

long intergenic non-protein coding RNA 1494

LINC01497 Gene

long intergenic non-protein coding RNA 1497

LINC01496 Gene

long intergenic non-protein coding RNA 1496

LINC01493 Gene

long intergenic non-protein coding RNA 1493

LINC01492 Gene

long intergenic non-protein coding RNA 1492

LINC01498 Gene

long intergenic non-protein coding RNA 1498

TAF13P2 Gene

TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa pseudogene 2

TAF13P1 Gene

TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor pseudogene 1

RNU6-21P Gene

RNA, U6 small nuclear 21, pseudogene

CD27-AS1 Gene

CD27 antisense RNA 1

TRC-GCA9-3 Gene

transfer RNA-Cys (GCA) 9-3

TRC-GCA9-2 Gene

transfer RNA-Cys (GCA) 9-2

TRC-GCA9-1 Gene

transfer RNA-Cys (GCA) 9-1

LINC00458 Gene

long intergenic non-protein coding RNA 458

LINC00459 Gene

long intergenic non-protein coding RNA 459

LINC00452 Gene

long intergenic non-protein coding RNA 452

LINC00456 Gene

long intergenic non-protein coding RNA 456

LINC00457 Gene

long intergenic non-protein coding RNA 457

LINC00454 Gene

long intergenic non-protein coding RNA 454

RBMY2WP Gene

RNA binding motif protein, Y-linked, family 2, member W pseudogene

SOX9-AS1 Gene

SOX9 antisense RNA 1

RNA5SP488 Gene

RNA, 5S ribosomal pseudogene 488

RNA5SP489 Gene

RNA, 5S ribosomal pseudogene 489

RNA5SP484 Gene

RNA, 5S ribosomal pseudogene 484

RNA5SP480 Gene

RNA, 5S ribosomal pseudogene 480

RNA5SP482 Gene

RNA, 5S ribosomal pseudogene 482

RNA5SP483 Gene

RNA, 5S ribosomal pseudogene 483

TRE-TTC12-1 Gene

transfer RNA-Glu (TTC) 12-1

RNU2-3P Gene

RNA, U2 small nuclear 3, pseudogene

HNF1A-AS1 Gene

HNF1A antisense RNA 1

Biomarker of colon cancer and stomach cancer. [provided by Alliance of Genome Resources, Mar 2025]

LINC00954 Gene

long intergenic non-protein coding RNA 954

CDH23-AS1 Gene

CDH23 antisense RNA 1

HIF1A-AS1 Gene

HIF1A antisense RNA 1

HIF1A-AS2 Gene

HIF1A antisense RNA 2

Enables miRNA inhibitor activity via base-pairing. Involved in lncRNA-mediated post-transcriptional gene silencing and positive regulation of miRNA catabolic process. [provided by Alliance of Genome Resources, Mar 2025]

TRC-GCA15-1 Gene

transfer RNA-Cys (GCA) 15-1

LINC01128 Gene

long intergenic non-protein coding RNA 1128

LINC01125 Gene

long intergenic non-protein coding RNA 1125

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

LINC01124 Gene

long intergenic non-protein coding RNA 1124

LINC01126 Gene

long intergenic non-protein coding RNA 1126

LINC01121 Gene

long intergenic non-protein coding RNA 1121

LINC01120 Gene

long intergenic non-protein coding RNA 1120

LINC01123 Gene

long intergenic non-protein coding RNA 1123

LINC01122 Gene

long intergenic non-protein coding RNA 1122

RNU7-75P Gene

RNA, U7 small nuclear 75 pseudogene

RNU7-4P Gene

RNA, U7 small nuclear 4 pseudogene

RN7SKP1 Gene

RNA, 7SK small nuclear pseudogene 1

LINC00298 Gene

long intergenic non-protein coding RNA 298

LINC00299 Gene

long intergenic non-protein coding RNA 299

LINC00294 Gene

long intergenic non-protein coding RNA 294

LINC00297 Gene

long intergenic non-protein coding RNA 297

LINC00293 Gene

long intergenic non-protein coding RNA 293

LOC102724525 Gene

carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 pseudogene

TRC-GCA10-1 Gene

transfer RNA-Cys (GCA) 10-1

TAF7L Gene

TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa

This gene is similar to a mouse gene that encodes a TATA box binding protein-associated factor, and shows testis-specific expression. The encoded protein could be a spermatogenesis-specific component of the DNA-binding general transcription factor complex TFIID. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2009]

LINC00364 Gene

long intergenic non-protein coding RNA 364

FLVCR1-AS1 Gene

FLVCR1 antisense RNA 1 (head to head)

RNU5A-8P Gene

RNA, U5A small nuclear 8, pseudogene

LOC101060521 Gene

DNA-directed RNA polymerase III subunit RPC5

ETV5-AS1 Gene

ETV5 antisense RNA 1

TMEM44-AS1 Gene

TMEM44 antisense RNA 1

HNRNPD Gene

heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)

This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are nucleic acid binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has two repeats of quasi-RRM domains that bind to RNAs. It localizes to both the nucleus and the cytoplasm. This protein is implicated in the regulation of mRNA stability. Alternative splicing of this gene results in four transcript variants. [provided by RefSeq, Jul 2008]

RNU6-53P Gene

RNA, U6 small nuclear 53, pseudogene

TRN-GTT11-2 Gene

transfer RNA-Asn (GTT) 11-2

TRN-GTT11-1 Gene

transfer RNA-Asn (GTT) 11-1

TRC-GCA8-1 Gene

transfer RNA-Cys (GCA) 8-1

BZRAP1-AS1 Gene

BZRAP1 antisense RNA 1

RNU6-39P Gene

RNA, U6 small nuclear 39, pseudogene

SRA1 Gene

steroid receptor RNA activator 1

Both long non-coding and protein-coding RNAs are transcribed from this gene, and they represent alternatively spliced transcript variants. This gene was initially defined as a non-coding RNA, which is a coactivator for several nuclear receptors (NRs) and is associated with breast cancer. It has now been found that this gene is involved in the regulation of many NR and non-NR activities, including metabolism, adipogenesis and chromatin organization. The long non-coding RNA transcripts interact with a variety of proteins, including the protein encoded by this gene. The encoded protein acts as a transcriptional repressor by binding to the non-coding RNA. [provided by RefSeq, Mar 2012]

LURAP1L-AS1 Gene

LURAP1L antisense RNA 1

LINC01402 Gene

long intergenic non-protein coding RNA 1402

RNU5F-6P Gene

RNA, U5F small nuclear 6, pseudogene

COL5A1-AS1 Gene

COL5A1 antisense RNA 1

TRE-TTC13-1 Gene

transfer RNA-Glu (TTC) 13-1

LINC01024 Gene

long intergenic non-protein coding RNA 1024

RNA5SP145 Gene

RNA, 5S ribosomal pseudogene 145

RNA5SP143 Gene

RNA, 5S ribosomal pseudogene 143

RNA5SP142 Gene

RNA, 5S ribosomal pseudogene 142

RNA5SP148 Gene

RNA, 5S ribosomal pseudogene 148

EWSR1 Gene

EWS RNA-binding protein 1

This gene encodes a multifunctional protein that is involved in various cellular processes, including gene expression, cell signaling, and RNA processing and transport. The protein includes an N-terminal transcriptional activation domain and a C-terminal RNA-binding domain. Chromosomal translocations between this gene and various genes encoding transcription factors result in the production of chimeric proteins that are involved in tumorigenesis. These chimeric proteins usually consist of the N-terminal transcriptional activation domain of this protein fused to the C-terminal DNA-binding domain of the transcription factor protein. Mutations in this gene, specifically a t(11;22)(q24;q12) translocation, are known to cause Ewing sarcoma as well as neuroectodermal and various other tumors. Alternative splicing of this gene results in multiple transcript variants. Related pseudogenes have been identified on chromosomes 1 and 14. [provided by RefSeq, Jul 2009]

TNK2-AS1 Gene

TNK2 antisense RNA 1

LOC400026 Gene

protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene

ITGA9-AS1 Gene

ITGA9 antisense RNA 1

WWTR1-AS1 Gene

WWTR1 antisense RNA 1

SNAR-A8 Gene

small ILF3/NF90-associated RNA A8

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

MLLT4-AS1 Gene

MLLT4 antisense RNA 1 (head to head)

LINC00643 Gene

long intergenic non-protein coding RNA 643

LINC00642 Gene

long intergenic non-protein coding RNA 642

LINC00641 Gene

long intergenic non-protein coding RNA 641

LINC00640 Gene

long intergenic non-protein coding RNA 640

LINC00645 Gene

long intergenic non-protein coding RNA 645

LINC00644 Gene

long intergenic non-protein coding RNA 644

LINC00649 Gene

long intergenic non-protein coding RNA 649

LINC00648 Gene

long intergenic non-protein coding RNA 648

POLR3F Gene

polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa

The protein encoded by this gene is one of more than a dozen subunits forming eukaryotic RNA polymerase III (RNA Pol III), which transcribes 5S ribosomal RNA and tRNA genes. This protein has been shown to bind both TFIIIB90 and TBP, two subunits of RNA polymerase III transcription initiation factor IIIB (TFIIIB). Unlike most of the other RNA Pol III subunits, the encoded protein is unique to this polymerase. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]

POLR3G Gene

polymerase (RNA) III (DNA directed) polypeptide G (32kD)

Enables chromatin binding activity. Involved in positive regulation of innate immune response; positive regulation of interferon-beta production; and transcription by RNA polymerase III. Acts upstream of or within cell population proliferation. Located in cytosol and nuclear body. Part of RNA polymerase III complex. [provided by Alliance of Genome Resources, Mar 2025]

POLR3D Gene

polymerase (RNA) III (DNA directed) polypeptide D, 44kDa

This gene complements a temperature-sensitive mutant isolated from the BHK-21 Syrian hamster cell line. It leads to a block in progression through the G1 phase of the cell cycle at nonpermissive temperatures. [provided by RefSeq, Jul 2008]

POLR3E Gene

polymerase (RNA) III (DNA directed) polypeptide E (80kD)

Predicted to be involved in tRNA transcription by RNA polymerase III. Located in nucleoplasm. Part of RNA polymerase III complex. [provided by Alliance of Genome Resources, Mar 2025]

POLR3B Gene

polymerase (RNA) III (DNA directed) polypeptide B

This gene encodes the second largest subunit of RNA polymerase III, the polymerase responsible for synthesizing transfer and small ribosomal RNAs in eukaryotes. The largest subunit and the encoded protein form the catalytic center of RNA polymerase III. Mutations in this gene are a cause of hypomyelinating leukodystrophy. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Dec 2011]

POLR3C Gene

polymerase (RNA) III (DNA directed) polypeptide C (62kD)

Enables single-stranded DNA binding activity. Involved in positive regulation of innate immune response and positive regulation of interferon-beta production. Located in nucleoplasm. Part of RNA polymerase III complex. [provided by Alliance of Genome Resources, Mar 2025]

POLR3A Gene

polymerase (RNA) III (DNA directed) polypeptide A, 155kDa

The protein encoded by this gene is the catalytic component of RNA polymerase III, which synthesizes small RNAs. The encoded protein also acts as a sensor to detect foreign DNA and trigger an innate immune response. [provided by RefSeq, Aug 2011]

POLR3K Gene

polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa

This gene encodes a small essential subunit of RNA polymerase III, the polymerase responsible for synthesizing transfer and small ribosomal RNAs in eukaryotes. The carboxy-terminal domain of this subunit shares a high degree of sequence similarity to the carboxy-terminal domain of an RNA polymerase II elongation factor. This similarity in sequence is supported by functional studies showing that this subunit is required for proper pausing and termination during transcription. Pseudogenes of this gene are found on chromosomes 13 and 17.[provided by RefSeq, Jul 2010]

POLR3H Gene

polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)

Enables DNA-directed 5'-3' RNA polymerase activity. Involved in transcription by RNA polymerase III. Located in centrosome and nucleoplasm. Part of RNA polymerase III complex. [provided by Alliance of Genome Resources, Mar 2025]

MAN1B1-AS1 Gene

MAN1B1 antisense RNA 1 (head to head)

RRP7BP Gene

ribosomal RNA processing 7 homolog B (S. cerevisiae), pseudogene

Predicted to be involved in rRNA processing and ribosomal small subunit assembly. Predicted to be part of CURI complex and UTP-C complex. [provided by Alliance of Genome Resources, Mar 2025]

LINC00251 Gene

long intergenic non-protein coding RNA 251

ZNF503-AS1 Gene

ZNF503 antisense RNA 1

ZNF503-AS2 Gene

ZNF503 antisense RNA 2

ATP6V1B1-AS1 Gene

ATP6V1B1 antisense RNA 1

GFOD1-AS1 Gene

GFOD1 antisense RNA 1

PYCARD-AS1 Gene

PYCARD antisense RNA 1

USP12-AS1 Gene

USP12 antisense RNA 1

BOK-AS1 Gene

BOK antisense RNA 1

LOC101929862 Gene

RNA polymerase II transcription factor SIII subunit A3-like

RNA5SP519 Gene

RNA, 5S ribosomal pseudogene 519

RNA5SP516 Gene

RNA, 5S ribosomal pseudogene 516

TRN-GTT10-1 Gene

transfer RNA-Asn (GTT) 10-1

RNA5SP511 Gene

RNA, 5S ribosomal pseudogene 511

RNU4-4P Gene

RNA, U4 small nuclear 4, pseudogene

ZFX-AS1 Gene

ZFX antisense RNA 1

TRE-CTC15-1 Gene

transfer RNA-Glu (CTC) 15-1

LOC285697 Gene

TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene

TRT-AGT1-3 Gene

transfer RNA-Thr (AGT) 1-3

TRT-AGT1-2 Gene

transfer RNA-Thr (AGT) 1-2

TRT-AGT1-1 Gene

transfer RNA-Thr (AGT) 1-1

LIFR-AS1 Gene

LIFR antisense RNA 1

TRA-CGC2-1 Gene

transfer RNA-Ala (CGC) 2-1

TRT-CGT3-1 Gene

transfer RNA-Thr (CGT) 3-1

TRS-TGA4-1 Gene

transfer RNA-Ser (TGA) 4-1

Hong et al. (1992) [PubMed 1549482] sequenced a human serine tRNA by the dideoxysequencing method. Sequence analysis revealed that the gene forms a typical cloverleaf structure with all appropriate conserved bases, and that the anticodon sequence is 5-prime-UGA-3-prime. The gene has no introns and its nucleotide sequence is highly homologous to those of previously characterized serine tRNAs.[supplied by OMIM, Sep 2009]

SNAR-G1 Gene

small ILF3/NF90-associated RNA G1

SNAR-G2 Gene

small ILF3/NF90-associated RNA G2

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

LOC100130075 Gene

SUZ RNA binding domain containing 1 pseudogene

LINC00929 Gene

long intergenic non-protein coding RNA 929

TRUND-NNN7-1 Gene

transfer RNA-undetermined (NNN) 7-1

RORB-AS1 Gene

RORB antisense RNA 1

TRC-GCA21-1 Gene

transfer RNA-Cys (GCA) 21-1

LOC101054525 Gene

progesterone receptor antisense RNA

LINC00603 Gene

long intergenic non-protein coding RNA 603

LINC01419 Gene

long intergenic non-protein coding RNA 1419

LINC01415 Gene

long intergenic non-protein coding RNA 1415

LINC01416 Gene

long intergenic non-protein coding RNA 1416

LINC01411 Gene

long intergenic non-protein coding RNA 1411

LINC01413 Gene

long intergenic non-protein coding RNA 1413

LINC01412 Gene

long intergenic non-protein coding RNA 1412

RAB6C-AS1 Gene

RAB6C antisense RNA 1

RBMY1GP Gene

RNA binding motif protein, Y-linked, family 1, member G, pseudogene

SEC24B-AS1 Gene

SEC24B antisense RNA 1

This lncRNA contains a single Alu element which, along with 1/2-sbsRNA3, appears to target the 3' UTR Alu element in MTAP. Downregulation of the RNA appears to up-regulate the target. [provided by RefSeq, Feb 2011]

EFCAB6-AS1 Gene

EFCAB6 antisense RNA 1

RNU6-83P Gene

RNA, U6 small nuclear 83, pseudogene

RNA5SP405 Gene

RNA, 5S ribosomal pseudogene 405

RNA5SP406 Gene

RNA, 5S ribosomal pseudogene 406

RNA5SP401 Gene

RNA, 5S ribosomal pseudogene 401

RNA5SP402 Gene

RNA, 5S ribosomal pseudogene 402

RNA5SP409 Gene

RNA, 5S ribosomal pseudogene 409

RNU1-27P Gene

RNA, U1 small nuclear 27, pseudogene

TM4SF1-AS1 Gene

TM4SF1 antisense RNA 1

TRSUP-TTA2-1 Gene

transfer RNA suppressor (TTA) 2-1

RNU6-48P Gene

RNA, U6 small nuclear 48, pseudogene

RNU1-18P Gene

RNA, U1 small nuclear 18, pseudogene

TRE-CTC14-1 Gene

transfer RNA-Glu (CTC) 14-1

TRY-ATA1-1 Gene

transfer RNA-Tyr (ATA) 1-1

LOC391742 Gene

TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene

Predicted to enable protein heterodimerization activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. [provided by Alliance of Genome Resources, Mar 2025]

LOC391746 Gene

TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene

Predicted to enable protein heterodimerization activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. [provided by Alliance of Genome Resources, Mar 2025]

RBMY2DP Gene

RNA binding motif protein, Y-linked, family 2, member D pseudogene

NKX2-2-AS1 Gene

NKX2-2 antisense RNA 1

RNU2-1 Gene

RNA, U2 small nuclear 1

The spliceosome is a multicomponent ribonucleoprotein complex that catalyzes the removal of introns from nuclear mRNA precursors. The spliceosome is composed of four small ribonucleoprotein particles (the U1, U2, and U4/U6 snRNPs) and numerous additional proteins. The U2 small nuclear RNA (snRNA) is a RNA component of the U2 snRNP that interacts with the 3' region of the intron at the branch site. Several sites in the human genome express U2 snRNAs. This locus represents an array of U2 snRNA genes located at 17q21-22 that undergoes concerted evolution to homogenize repeat units within the array. Each repeat in this array is approximately 6.1 kb long and contains a single copy of the U2 snRNA. Arrays of six to more than 30 repeats have been reported. [provided by RefSeq, Mar 2009]

RNU7-42P Gene

RNA, U7 small nuclear 42 pseudogene

SNORD32A Gene

small nucleolar RNA, C/D box 32A

Predicted to be involved in RNA processing. Predicted to act upstream of or within glucose metabolic process; insulin secretion; and reactive oxygen species metabolic process. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD32B Gene

small nucleolar RNA, C/D box 32B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

NKX2-1-AS1 Gene

NKX2-1 antisense RNA 1

LINC00504 Gene

long intergenic non-protein coding RNA 504

LINC00505 Gene

long intergenic non-protein coding RNA 505

LINC00506 Gene

long intergenic non-protein coding RNA 506

LINC00507 Gene

long intergenic non-protein coding RNA 507

LINC00501 Gene

long intergenic non-protein coding RNA 501

LINC00216 Gene

long intergenic non-protein coding RNA 216

LINC00210 Gene

long intergenic non-protein coding RNA 210

LINC00211 Gene

long intergenic non-protein coding RNA 211

LOC284685 Gene

EWS RNA-binding protein 1 pseudogene

LINC00967 Gene

long intergenic non-protein coding RNA 967

LINC00964 Gene

long intergenic non-protein coding RNA 964

LINC00965 Gene

long intergenic non-protein coding RNA 965

LINC00963 Gene

long intergenic non-protein coding RNA 963

LINC00960 Gene

long intergenic non-protein coding RNA 960

LINC00961 Gene

long intergenic non-protein coding RNA 961

Involved in cellular response to amino acid stimulus and negative regulation of TORC1 signaling. Located in late endosome membrane and lysosomal proton-transporting V-type ATPase complex. [provided by Alliance of Genome Resources, Mar 2025]

FOCAD-AS1 Gene

FOCAD antisense RNA 1

TRK-CTT5-1 Gene

transfer RNA-Lys (CTT) 5-1

RFPL1S Gene

RFPL1 antisense RNA 1

TRC-GCA20-1 Gene

transfer RNA-Cys (GCA) 20-1

RNU7-85P Gene

RNA, U7 small nuclear 85 pseudogene

PRKRAP1 Gene

protein kinase, interferon-inducible double stranded RNA dependent activator pseudogene 1

RNA28S5 Gene

RNA, 28S ribosomal 5

45S ribosomal DNA (rDNA) arrays, or clusters, are present on human chromosomes 13, 14, 15, 21 and 22, designated RNR1 through RNR5, respectively. Each cluster consists of multiple 45S rDNA repeat units that vary in number among individuals and chromosomes, with total diploid copy number estimates ranging from 60 to >800 repeat units in a human genome. The 45S rDNA repeat unit encodes a 45S rRNA precursor, transcribed by RNA polymerase I, which is processed to form the 18S, 5.8S and 28S rRNAs. This gene is a representative copy of the 28S ribosomal RNA whose chromosomal location is unknown. [provided by RefSeq, Mar 2017]

LINC01608 Gene

long intergenic non-protein coding RNA 1608

LINC01609 Gene

long intergenic non-protein coding RNA 1609

LINC01604 Gene

long intergenic non-protein coding RNA 1604

LINC01605 Gene

long intergenic non-protein coding RNA 1605

LINC01606 Gene

long intergenic non-protein coding RNA 1606

LINC01607 Gene

long intergenic non-protein coding RNA 1607

LINC01600 Gene

long intergenic non-protein coding RNA 1600

LINC01601 Gene

long intergenic non-protein coding RNA 1601

LINC01602 Gene

long intergenic non-protein coding RNA 1602

LINC01603 Gene

long intergenic non-protein coding RNA 1603

LINC00559 Gene

long intergenic non-protein coding RNA 559

LINC00558 Gene

long intergenic non-protein coding RNA 558

LINC00557 Gene

long intergenic non-protein coding RNA 557

LINC00556 Gene

long intergenic non-protein coding RNA 556

LINC00555 Gene

long intergenic non-protein coding RNA 555

LINC00552 Gene

long intergenic non-protein coding RNA 552

LINC00551 Gene

long intergenic non-protein coding RNA 551

LINC00550 Gene

long intergenic non-protein coding RNA 550

REXO1L5P Gene

REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 5, pseudogene

TRG-GCC6-1 Gene

transfer RNA-Gly (GCC) 6-1

KRBOX1-AS1 Gene

KRBOX1 antisense RNA 1

LINC01337 Gene

long intergenic non-protein coding RNA 1337

DPP10-AS1 Gene

DPP10 antisense RNA 1

DPP10-AS3 Gene

DPP10 antisense RNA 3

MORC1-AS1 Gene

MORC1 antisense RNA 1

RN7SL7P Gene

RNA, 7SL, cytoplasmic 7, pseudogene

RNA5SP233 Gene

RNA, 5S ribosomal pseudogene 233

RNA5SP232 Gene

RNA, 5S ribosomal pseudogene 232

RNA5SP231 Gene

RNA, 5S ribosomal pseudogene 231

RNA5SP239 Gene

RNA, 5S ribosomal pseudogene 239

RNA5SP238 Gene

RNA, 5S ribosomal pseudogene 238

EZR-AS1 Gene

EZR antisense RNA 1

SNORD17 Gene

small nucleolar RNA, C/D box 17

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TAB3-AS1 Gene

TAB3 antisense RNA 1

TRQ-TTG8-1 Gene

transfer RNA-Gln (TTG) 8-1

SNHG5 Gene

small nucleolar RNA host gene 5

This gene represent a snoRNA host gene and produces a long non-coding RNA. This RNA may regulate gene expression by acting as a sponge for microRNAs. This transcript may also stabilize mRNAs by blocking degradation by staufen double-stranded RNA binding protein 1. [provided by RefSeq, Dec 2017]

SNHG4 Gene

small nucleolar RNA host gene 4

SNHG7 Gene

small nucleolar RNA host gene 7

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNHG6 Gene

small nucleolar RNA host gene 6

SNHG1 Gene

small nucleolar RNA host gene 1

This locus represents a small nucleolar RNA host gene that produces multiple alternatively spliced long non-coding RNAs. This gene is upregulated in cancers and is thought to act as promoter of cell proliferation. This transcript negatively regulates tumor suppressor genes such as tumor protein p53. Expression of this locus may be a marker of tumor progression. [provided by RefSeq, Dec 2017]

RGPD4-AS1 Gene

RGPD4 antisense RNA 1 (head to head)

SNHG8 Gene

small nucleolar RNA host gene 8

RNU7-28P Gene

RNA, U7 small nuclear 28 pseudogene

TRA-AGC2-2 Gene

transfer RNA-Ala (AGC) 2-2

PIRC64 Gene

piwi-interacting RNA cluster 64

PIRC62 Gene

piwi-interacting RNA cluster 62

COL4A2-AS2 Gene

COL4A2 antisense RNA 2

TRD-GTC2-10 Gene

transfer RNA-Asp (GTC) 2-10

TRD-GTC2-11 Gene

transfer RNA-Asp (GTC) 2-11

RNU7-65P Gene

RNA, U7 small nuclear 65 pseudogene

LINC01375 Gene

long intergenic non-protein coding RNA 1375

LINC01376 Gene

long intergenic non-protein coding RNA 1376

LINC01377 Gene

long intergenic non-protein coding RNA 1377

LINC01370 Gene

long intergenic non-protein coding RNA 1370

RNA5SP470 Gene

RNA, 5S ribosomal pseudogene 470

RAMP2-AS1 Gene

RAMP2 antisense RNA 1

LINC01378 Gene

long intergenic non-protein coding RNA 1378

RNU7-38P Gene

RNA, U7 small nuclear 38 pseudogene

PARTICL Gene

promoter of MAT2A antisense radiation-induced circulating long non-coding RNA

Enables dsDNA-RNA triple helix-forming chromatin adaptor activity and mRNA binding activity. Involved in cellular response to ionizing radiation and regulatory ncRNA-mediated heterochromatin formation. Is active in cytosol and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD15B Gene

small nucleolar RNA, C/D box 15B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD15A Gene

small nucleolar RNA, C/D box 15A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRA-AGC11-1 Gene

transfer RNA-Ala (AGC) 11-1

SLC39A12-AS1 Gene

SLC39A12 antisense RNA 1

RNA5SP472 Gene

RNA, 5S ribosomal pseudogene 472

LINC01484 Gene

long intergenic non-protein coding RNA 1484

MACROD2-AS1 Gene

MACROD2 antisense RNA 1

LINC00028 Gene

long intergenic non-protein coding RNA 28

RNA5SP408 Gene

RNA, 5S ribosomal pseudogene 408

LINC01483 Gene

long intergenic non-protein coding RNA 1483

EDNRB-AS1 Gene

EDNRB antisense RNA 1

LACTB2-AS1 Gene

LACTB2 antisense RNA 1

TRK-CTT4-1 Gene

transfer RNA-Lys (CTT) 4-1

DQX1 Gene

DEAQ box RNA-dependent ATPase 1

Predicted to enable RNA binding activity and helicase activity. Predicted to be involved in DNA duplex unwinding; chromatin looping; and chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. [provided by Alliance of Genome Resources, Mar 2025]

TRNAY-AUA Gene

transfer RNA tyrosine (anticodon AUA)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

LINC00160 Gene

long intergenic non-protein coding RNA 160

HDAC11-AS1 Gene

HDAC11 antisense RNA 1

HID1-AS1 Gene

HID1 antisense RNA 1

CCDC39-AS1 Gene

CCDC39 antisense RNA 1

SNORD3B-1 Gene

small nucleolar RNA, C/D box 3B-1

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD3B-2 Gene

small nucleolar RNA, C/D box 3B-2

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RORA-AS1 Gene

RORA antisense RNA 1

RNA5SP267 Gene

RNA, 5S ribosomal pseudogene 267

RNA5SP261 Gene

RNA, 5S ribosomal pseudogene 261

LINC01039 Gene

long intergenic non-protein coding RNA 1039

LINC01038 Gene

long intergenic non-protein coding RNA 1038

LINC01036 Gene

long intergenic non-protein coding RNA 1036

LINC01033 Gene

long intergenic non-protein coding RNA 1033

LINC01032 Gene

long intergenic non-protein coding RNA 1032

LINC01031 Gene

long intergenic non-protein coding RNA 1031

LINC01030 Gene

long intergenic non-protein coding RNA 1030

PPP4R1-AS1 Gene

PPP4R1 antisense RNA 1

PHEX-AS1 Gene

PHEX antisense RNA 1

LOC101929749 Gene

carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 pseudogene

TRK-TTT8-1 Gene

transfer RNA-Lys (TTT) 8-1

LOC100129391 Gene

zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 pseudogene

TRV-AAC6-1 Gene

transfer RNA-Val (AAC) 6-1

ANO1-AS1 Gene

ANO1 antisense RNA 1

HOXB-AS1 Gene

HOXB cluster antisense RNA 1

EML2-AS1 Gene

EML2 antisense RNA 1

FIRRE Gene

firre intergenic repeating RNA element

This gene produces a long RNA containing a repeating sequence. This RNA interacts with heterogeneous nuclear ribonucleoprotein U and coats chromosomes, where it plays an important role in the maintenance of repressive chromatin. This transcript can also act post-transcriptionally to regulate the stability of mRNAs during the innate immune response. [provided by RefSeq, Dec 2017]

SNORD83A Gene

small nucleolar RNA, C/D box 83A

Intronic regions of ribosomal protein genes can harbor noncoding small nucleolar RNAs (snoRNAs), like SNORD83A, which are generated during pre-mRNA processing. snoRNAs form part of the small nucleolar ribonucleoprotein particles (snoRNPs) involved in pre-rRNA processing and modification. snoRNAs of the box C/D class, like SNORD83A, function in 2-prime-O-ribose methylation of rRNAs (Duga et al., 2000 [PubMed 10684968]).[supplied by OMIM, Mar 2008]

SNORD83B Gene

small nucleolar RNA, C/D box 83B

Intronic regions of ribosomal protein genes can harbor noncoding small nucleolar RNAs (snoRNAs), like SNORD83B, which are generated during pre-mRNA processing. snoRNAs form part of the small nucleolar ribonucleoprotein particles (snoRNPs) involved in pre-rRNA processing and modification. snoRNAs of the box C/D class, like SNORD83B, function in 2-prime-O-ribose methylation of rRNAs (Duga et al., 2000 [PubMed 10684968]).[supplied by OMIM, Mar 2008]

KCNQ1-AS1 Gene

KCNQ1 antisense RNA 1

SNORA71C Gene

small nucleolar RNA, H/ACA box 71C

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA71B Gene

small nucleolar RNA, H/ACA box 71B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA71A Gene

small nucleolar RNA, H/ACA box 71A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA71E Gene

small nucleolar RNA, H/ACA box 71E

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RERG-AS1 Gene

RERG antisense RNA 1

LINC01410 Gene

long intergenic non-protein coding RNA 1410

RBFOX3 Gene

RNA binding protein, fox-1 homolog (C. elegans) 3

This gene encodes a member of the RNA-binding FOX protein family which is involved in the regulation of alternative splicing of pre-mRNA. The protein has an N-terminal proline-rich region, an RNA recognition motif (RRM) domain, and a C-terminal alanine-rich region. This gene produces the neuronal nuclei (NeuN) antigen that has been widely used as a marker for post-mitotic neurons. This gene has its highest expression in the central nervous system and plays a prominent role in neural tissue development and regulation of adult brain function. Mutations in this gene have been associated with numerous neurological disorders. Alternative splicing of this gene results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, May 2017]

RBFOX1 Gene

RNA binding protein, fox-1 homolog (C. elegans) 1

The Fox-1 family of RNA-binding proteins is evolutionarily conserved, and regulates tissue-specific alternative splicing in metazoa. Fox-1 recognizes a (U)GCAUG stretch in regulated exons or in flanking introns. The protein binds to the C-terminus of ataxin-2 and may contribute to the restricted pathology of spinocerebellar ataxia type 2 (SCA2). Ataxin-2 is the product of the SCA2 gene which causes familial neurodegenerative diseases. Fox-1 and ataxin-2 are both localized in the trans-Golgi network. Several alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2011]

LINC01231 Gene

long intergenic non-protein coding RNA 1231

LINC01230 Gene

long intergenic non-protein coding RNA 1230

LINC01233 Gene

long intergenic non-protein coding RNA 1233

LINC01237 Gene

long intergenic non-protein coding RNA 1237

LINC00184 Gene

long intergenic non-protein coding RNA 184

LINC00189 Gene

long intergenic non-protein coding RNA 189

RNA5SP339 Gene

RNA, 5S ribosomal pseudogene 339

RORA-AS2 Gene

RORA antisense RNA 2

TRS-AGA2-6 Gene

transfer RNA-Ser (AGA) 2-6

RNU6-66P Gene

RNA, U6 small nuclear 66, pseudogene

HLX-AS1 Gene

HLX antisense RNA 1

PGM5-AS1 Gene

PGM5 antisense RNA 1

DLG1-AS1 Gene

DLG1 antisense RNA 1

SNORD85 Gene

small nucleolar RNA, C/D box 85

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

ARSD-AS1 Gene

ARSD antisense RNA 1

C15ORF59-AS1 Gene

C15orf59 antisense RNA 1

OSGEPL1-AS1 Gene

OSGEPL1 antisense RNA 1

NUTM2A-AS1 Gene

NUTM2A antisense RNA 1

TRI-AAT8-1 Gene

transfer RNA-Ile (AAT) 8-1

TRL-TAG4-1 Gene

transfer RNA-Leu (TAG) 4-1

EMX2OS Gene

EMX2 opposite strand/antisense RNA

TRN-GTT6-1 Gene

transfer RNA-Asn (GTT) 6-1

SPATA13-AS1 Gene

SPATA13 antisense RNA 1

DNAH17-AS1 Gene

DNAH17 antisense RNA 1

RNU7-8P Gene

RNA, U7 small nuclear 8 pseudogene

RBM22P11 Gene

RNA binding motif protein 22 pseudogene 11

RBM22P12 Gene

RNA binding motif protein 22 pseudogene 12

RBM22P13 Gene

RNA binding motif protein 22 pseudogene 13

RNF139-AS1 Gene

RNF139 antisense RNA 1 (head to head)

GRID1-AS1 Gene

GRID1 antisense RNA 1

KIRREL3-AS2 Gene

KIRREL3 antisense RNA 2

KIRREL3-AS3 Gene

KIRREL3 antisense RNA 3

KIRREL3-AS1 Gene

KIRREL3 antisense RNA 1

RNA5SP180 Gene

RNA, 5S ribosomal pseudogene 180

TRV-AAC1-2 Gene

transfer RNA-Val (AAC) 1-2

TRV-AAC1-3 Gene

transfer RNA-Val (AAC) 1-3

TMLHE-AS1 Gene

TMLHE antisense RNA 1

EVX1-AS Gene

EVX1 antisense RNA

Predicted to enable chromatin binding activity. Predicted to be part of histone methyltransferase complex. [provided by Alliance of Genome Resources, Mar 2025]

LEO1 Gene

Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)

LEO1, parafibromin (CDC73; MIM 607393), CTR9 (MIM 609366), and PAF1 (MIM 610506) form the PAF protein complex that associates with the RNA polymerase II subunit POLR2A (MIM 180660) and with a histone methyltransferase complex (Rozenblatt-Rosen et al., 2005 [PubMed 15632063]).[supplied by OMIM, Mar 2008]

LINC00448 Gene

long intergenic non-protein coding RNA 448

RBMXL1 Gene

RNA binding motif protein, X-linked-like 1

This gene represents a retrogene of RNA binding motif protein, X-linked (RBMX), which is located on chromosome X. While all introns in the coding sequence have been processed out compared to the RBMX locus, the ORF is intact and there is specific evidence for transcription at this location. The preservation of the ORF by purifying selection in all Old World monkeys carrying it suggests that this locus is likely to be functional, possibly during male meiosis when X chromosomal genes are silenced or during haploid stages of spermatogenesis. This gene shares 5' exon structure with the cysteine conjugate-beta lyase 2 locus on chromosome 1, but the coding sequences are non-overlapping. Alternative splicing results in two transcript variants. [provided by RefSeq, Jun 2009]

RBMXL3 Gene

RNA binding motif protein, X-linked-like 3

Predicted to enable mRNA binding activity and snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. [provided by Alliance of Genome Resources, Mar 2025]

RBMXL2 Gene

RNA binding motif protein, X-linked-like 2

This gene belongs to the HNRPG subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has two RRM domains that bind RNAs. This gene is intronless and is thought to be derived from a processed retroposon. However, unlike many retroposon-derived genes, this gene is not a pseudogene. The encoded protein has similarity to HNRPG and RBMY proteins and it is suggested to replace HNRPG protein function during meiotic prophase or act as a germ cell-specific splicing regulator. It primarily localizes to the nuclei of meiotic spermatocytes. This gene is a candidate for autosomal male infertility. [provided by RefSeq, Jul 2008]

PVRL3-AS1 Gene

PVRL3 antisense RNA 1

PTPRD-AS1 Gene

PTPRD antisense RNA 1

SNORD114-31 Gene

small nucleolar RNA, C/D box 114-31

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-30 Gene

small nucleolar RNA, C/D box 114-30

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRT-TGT3-1 Gene

transfer RNA-Thr (TGT) 3-1

LNX1-AS1 Gene

LNX1 antisense RNA 1

HTR2A-AS1 Gene

HTR2A antisense RNA 1

CA3-AS1 Gene

CA3 antisense RNA 1

LMO7-AS1 Gene

LMO7 antisense RNA 1

LOC100820734 Gene

LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene

RASAL2-AS1 Gene

RASAL2 antisense RNA 1

KIAA1614-AS1 Gene

KIAA1614 antisense RNA 1

IPO9-AS1 Gene

IPO9 antisense RNA 1

HOXD-AS2 Gene

HOXD cluster antisense RNA 2

TRV-AAC2-1 Gene

transfer RNA-Val (AAC) 2-1

RRS1-AS1 Gene

RRS1 antisense RNA 1 (head to head)

PABPC5-AS1 Gene

PABPC5 antisense RNA 1

RNU7-14P Gene

RNA, U7 small nuclear 14 pseudogene

SATB1-AS1 Gene

SATB1 antisense RNA 1

NSUN2 Gene

NOP2/Sun RNA methyltransferase family, member 2

This gene encodes a methyltransferase that catalyzes the methylation of cytosine to 5-methylcytosine (m5C) at position 34 of intron-containing tRNA(Leu)(CAA) precursors. This modification is necessary to stabilize the anticodon-codon pairing and correctly translate the mRNA. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene.[provided by RefSeq, Mar 2011]

RRP7A Gene

ribosomal RNA processing 7 homolog A (S. cerevisiae)

Enables RNA binding activity. Involved in cilium disassembly; protein localization to nucleolus; and ribosome biogenesis. Located in centrosome; cilium; and nucleolus. Part of small-subunit processome. Implicated in primary autosomal recessive microcephaly. [provided by Alliance of Genome Resources, Mar 2025]

GLIS3-AS1 Gene

GLIS3 antisense RNA 1

LOC246724 Gene

DNA directed RNA polymerase II polypeptide J-related gene

LOC246725 Gene

DNA directed RNA polymerase II polypeptide J-related gene

ARHGAP5-AS1 Gene

ARHGAP5 antisense RNA 1 (head to head)

Enables ubiquitin ligase inhibitor activity. Involved in negative regulation of proteasomal ubiquitin-dependent protein catabolic process. [provided by Alliance of Genome Resources, Mar 2025]

ZNRF3-AS1 Gene

ZNRF3 antisense RNA 1

ZNF674-AS1 Gene

ZNF674 antisense RNA 1 (head to head)

ELL2P1 Gene

elongation factor, RNA polymerase II, 2 pseudogene 1

ELL2P4 Gene

elongation factor, RNA polymerase II, 2 pseudogene 4

BANCR Gene

BRAF-activated non-protein coding RNA

This gene produces a long non-coding RNA that plays a role in tumor progression and epithelial to mesenchymal transition. This transcript acts through the MAP kinase signaling pathway. [provided by RefSeq, Dec 2017]

GNG12-AS1 Gene

GNG12 antisense RNA 1

TRK-TTT9-1 Gene

transfer RNA-Lys (TTT) 9-1

TMEM72-AS1 Gene

TMEM72 antisense RNA 1

TRG-GCC2-2 Gene

transfer RNA-Gly (GCC) 2-2

TRN-GTT7-1 Gene

transfer RNA-Asn (GTT) 7-1

RNVU1-17 Gene

RNA, variant U1 small nuclear 17

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNVU1-14 Gene

RNA, variant U1 small nuclear 14

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNVU1-15 Gene

RNA, variant U1 small nuclear 15

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNVU1-11 Gene

RNA, variant U1 small nuclear 11

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNVU1-18 Gene

RNA, variant U1 small nuclear 18

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNVU1-19 Gene

RNA, variant U1 small nuclear 19

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

PHKA1-AS1 Gene

PHKA1 antisense RNA 1

NTRK3-AS1 Gene

NTRK3 antisense RNA 1

SNORD12 Gene

small nucleolar RNA, C/D box 12

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

PIRC20 Gene

piwi-interacting RNA cluster 20

PIRC23 Gene

piwi-interacting RNA cluster 23

LOC100418693 Gene

protein kinase, interferon-inducible double stranded RNA dependent activator pseudogene

PIRC26 Gene

piwi-interacting RNA cluster 26

LOC100418694 Gene

protein kinase, interferon-inducible double stranded RNA dependent activator pseudogene

RNU7-30P Gene

RNA, U7 small nuclear 30 pseudogene

PRINS Gene

psoriasis associated non-protein coding RNA induced by stress

PIK3CD-AS1 Gene

PIK3CD antisense RNA 1

SNORD13 Gene

small nucleolar RNA, C/D box 13

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC01179 Gene

long intergenic non-protein coding RNA 1179

LINC00441 Gene

long intergenic non-protein coding RNA 441

LINC00440 Gene

long intergenic non-protein coding RNA 440

LINC00442 Gene

long intergenic non-protein coding RNA 442

LINC00445 Gene

long intergenic non-protein coding RNA 445

LINC00444 Gene

long intergenic non-protein coding RNA 444

OSER1-AS1 Gene

OSER1 antisense RNA 1 (head to head)

LINC00446 Gene

long intergenic non-protein coding RNA 446

ADAMTS9-AS2 Gene

ADAMTS9 antisense RNA 2

Implicated in diabetic retinopathy. [provided by Alliance of Genome Resources, Mar 2025]

LINC01234 Gene

long intergenic non-protein coding RNA 1234

LINC01239 Gene

long intergenic non-protein coding RNA 1239

SNORA68 Gene

small nucleolar RNA, H/ACA box 68

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA64 Gene

small nucleolar RNA, H/ACA box 64

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA65 Gene

small nucleolar RNA, H/ACA box 65

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA66 Gene

small nucleolar RNA, H/ACA box 66

This gene encodes a non-coding RNA that functions in the biogenesis of other small nuclear RNAs. This RNA is found in the nucleolus, where it may be involved in the pseudouridylation of 18S ribosomal RNA. This RNA is found associated with the GAR1 protein. [provided by RefSeq, Apr 2009]

SNORA67 Gene

small nucleolar RNA, H/ACA box 67

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA60 Gene

small nucleolar RNA, H/ACA box 60

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA61 Gene

small nucleolar RNA, H/ACA box 61

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA62 Gene

small nucleolar RNA, H/ACA box 62

Predicted to be involved in RNA processing. Part of box H/ACA RNP complex. [provided by Alliance of Genome Resources, Mar 2025]

SNORA63 Gene

small nucleolar RNA, H/ACA box 63

Predicted to be involved in RNA processing. Part of box H/ACA RNP complex. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP404 Gene

RNA, 5S ribosomal pseudogene 404

CSE1L-AS1 Gene

CSE1L antisense RNA 1

MZF1-AS1 Gene

MZF1 antisense RNA 1

THSD4-AS1 Gene

THSD4 antisense RNA 1

THSD4-AS2 Gene

THSD4 antisense RNA 2

SNORD116@ Gene

small nucleolar RNA, C/D box 116 cluster

LINC01521 Gene

long intergenic non-protein coding RNA 1521

LINC01520 Gene

long intergenic non-protein coding RNA 1520

LINC01525 Gene

long intergenic non-protein coding RNA 1525

LINC01524 Gene

long intergenic non-protein coding RNA 1524

LINC01527 Gene

long intergenic non-protein coding RNA 1527

LINC01529 Gene

long intergenic non-protein coding RNA 1529

LINC00691 Gene

long intergenic non-protein coding RNA 691

LINC00692 Gene

long intergenic non-protein coding RNA 692

LINC00693 Gene

long intergenic non-protein coding RNA 693

LINC00698 Gene

long intergenic non-protein coding RNA 698

TRN-GTT22-1 Gene

transfer RNA-Asn (GTT) 22-1

LINC00346 Gene

long intergenic non-protein coding RNA 346

LINC00347 Gene

long intergenic non-protein coding RNA 347

LINC00345 Gene

long intergenic non-protein coding RNA 345

LINC00342 Gene

long intergenic non-protein coding RNA 342

Biomarker of Huntington's disease. [provided by Alliance of Genome Resources, Mar 2025]

LINC00343 Gene

long intergenic non-protein coding RNA 343

LINC00341 Gene

long intergenic non-protein coding RNA 341

LINC00348 Gene

long intergenic non-protein coding RNA 348

USP30-AS1 Gene

USP30 antisense RNA 1

RFX3-AS1 Gene

RFX3 antisense RNA 1

TCEB3-AS1 Gene

TCEB3 antisense RNA 1

SNAPC5P1 Gene

small nuclear RNA activating complex, polypeptide 5, 19kDa pseudogene 1

TRNAS-CGA Gene

transfer RNA serine (anticodon CGA)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

UBE2E2-AS1 Gene

UBE2E2 antisense RNA 1 (head to head)

SEPT7-AS1 Gene

SEPT7 antisense RNA 1 (head to head)

REXO1L10P Gene

REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 10, pseudogene

TRNAV-UAC Gene

transfer RNA valine (anticodon UAC)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

SNORD116-25 Gene

small nucleolar RNA, C/D box 116-25

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-27 Gene

small nucleolar RNA, C/D box 116-27

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-21 Gene

small nucleolar RNA, C/D box 116-21

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

NPSR1-AS1 Gene

NPSR1 antisense RNA 1

This gene is located within a region that has been associated with asthma susceptibility. The locus is considered non-protein-coding based on lack of protein homology and a lack of experimental support for an encoded protein. Three alternatively spliced transcript variants have been identified for this gene. [provided by RefSeq, May 2010]

RNU5E-8P Gene

RNA, U5E small nuclear 8, pseudogene

POLR3KP2 Gene

polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa pseudogene 2

POLR3KP1 Gene

polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa pseudogene 1

PIRC90 Gene

piwi-interacting RNA cluster 90

STK4-AS1 Gene

STK4 antisense RNA 1 (head to head)

AGBL1-AS1 Gene

AGBL1 antisense RNA 1

LOXL1-AS1 Gene

LOXL1 antisense RNA 1

RNU7-51P Gene

RNA, U7 small nuclear 51 pseudogene

LSAMP-AS1 Gene

LSAMP antisense RNA 1

TRY-GTA5-2 Gene

transfer RNA-Tyr (GTA) 5-2

TRY-GTA5-3 Gene

transfer RNA-Tyr (GTA) 5-3

TRY-GTA5-1 Gene

transfer RNA-Tyr (GTA) 5-1

TRY-GTA5-4 Gene

transfer RNA-Tyr (GTA) 5-4

TRY-GTA5-5 Gene

transfer RNA-Tyr (GTA) 5-5

LINC01543 Gene

long intergenic non-protein coding RNA 1543

LINC01541 Gene

long intergenic non-protein coding RNA 1541

PRKRIR Gene

protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)

Predicted to enable several functions, including DNA binding activity; metal ion binding activity; and protein dimerization activity. Predicted to be involved in negative regulation of cell population proliferation and signal transduction. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

LINC01544 Gene

long intergenic non-protein coding RNA 1544

LATS2-AS1 Gene

LATS2 antisense RNA 1

TRK-CTT9-1 Gene

transfer RNA-Lys (CTT) 9-1

YTHDF2 Gene

YTH N(6)-methyladenosine RNA binding protein 2

This gene encodes a member of the YTH (YT521-B homology) superfamily containing YTH domain. The YTH domain is typical for the eukaryotes and is particularly abundant in plants. The YTH domain is usually located in the middle of the protein sequence and may function in binding to RNA. In addition to a YTH domain, this protein has a proline rich region which may be involved in signal transduction. An Alu-rich domain has been identified in one of the introns of this gene, which is thought to be associated with human longevity. In addition, reciprocal translocations between this gene and the Runx1 (AML1) gene on chromosome 21 has been observed in patients with acute myeloid leukemia. This gene was initially mapped to chromosome 14, which was later turned out to be a pseudogene. Alternatively spliced transcript variants encoding different isoforms have been identified in this gene. [provided by RefSeq, Oct 2012]

LINC00102 Gene

long intergenic non-protein coding RNA 102

LINC00290 Gene

long intergenic non-protein coding RNA 290

TBC1D22A-AS1 Gene

TBC1D22A antisense RNA 1

FENDRR Gene

FOXF1 adjacent non-coding developmental regulatory RNA

This gene produces a spliced long non-coding RNA transcribed bidirectionally with FOXF1 on the opposite strand. A similar gene in mouse is essential for normal development of the heart and body wall. The encoded transcript is thought to act by binding to polycomb repressive complex 2 (PRC2) and/or TrxG/MLL complexes to promote the methylation of the promoters of target genes, thus reducing their expression. It has been suggested that this transcript may play a role in the progression of gastric cancer. Alternatively spliced transcript variants have been identified. [provided by RefSeq, Mar 2015]

IL20RB-AS1 Gene

IL20RB antisense RNA 1

USP46-AS1 Gene

USP46 antisense RNA 1

SNORD65 Gene

small nucleolar RNA, C/D box 65

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD64 Gene

small nucleolar RNA, C/D box 64

This gene encodes a C/D box-type small nucleolar RNA that is expressed predominantly in the brain. Expression of this RNA is not detectable in the brains of patients with Prader-Willi syndrome. [provided by RefSeq, Jun 2010]

SNORD67 Gene

small nucleolar RNA, C/D box 67

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD66 Gene

small nucleolar RNA, C/D box 66

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD61 Gene

small nucleolar RNA, C/D box 61

Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box C/D class snoRNAs are involved in site-specific 2-prime-O-ribose methylation of preribosomal RNA precursors. This snoRNA is located in an intron of the RNA binding motif protein, X-linked gene (RBMX). [provided by RefSeq, Sep 2009]

SNORD60 Gene

small nucleolar RNA, C/D box 60

Predicted to be involved in RNA processing. Predicted to act upstream of or within intracellular cholesterol transport. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD63 Gene

small nucleolar RNA, C/D box 63

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD69 Gene

small nucleolar RNA, C/D box 69

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD68 Gene

small nucleolar RNA, C/D box 68

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP496 Gene

RNA, 5S ribosomal pseudogene 496

SCOC-AS1 Gene

SCOC antisense RNA 1

TRP-TGG3-5 Gene

transfer RNA-Pro (TGG) 3-5

TRP-TGG3-4 Gene

transfer RNA-Pro (TGG) 3-4

TRP-TGG3-3 Gene

transfer RNA-Pro (TGG) 3-3

TRP-TGG3-2 Gene

transfer RNA-Pro (TGG) 3-2

TRP-TGG3-1 Gene

transfer RNA-Pro (TGG) 3-1

LINC00266-3 Gene

long intergenic non-protein coding RNA 266-3

LINC00266-1 Gene

long intergenic non-protein coding RNA 266-1

RBMS3-AS1 Gene

RBMS3 antisense RNA 1

RBMY2TP Gene

RNA binding motif protein, Y-linked, family 2, member T pseudogene

NCRNA00250 Gene

non-protein coding RNA 250

LINC00632 Gene

long intergenic non-protein coding RNA 632

PLA2G4E-AS1 Gene

PLA2G4E antisense RNA 1

LINC00634 Gene

long intergenic non-protein coding RNA 634

Involved in neuron maturation. Located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

RNU6-15P Gene

RNA, U6 small nuclear 15, pseudogene

PITPNA-AS1 Gene

PITPNA antisense RNA 1

RNA5SP81 Gene

RNA, 5S ribosomal pseudogene 81

RNA5SP87 Gene

RNA, 5S ribosomal pseudogene 87

RNA5SP86 Gene

RNA, 5S ribosomal pseudogene 86

RNA5SP85 Gene

RNA, 5S ribosomal pseudogene 85

RNA5SP89 Gene

RNA, 5S ribosomal pseudogene 89

RNA5SP88 Gene

RNA, 5S ribosomal pseudogene 88

TRNAG-CCC Gene

transfer RNA glycine (anticodon CCC)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

RNA5SP308 Gene

RNA, 5S ribosomal pseudogene 308

TRNAQ-UUG Gene

transfer RNA glutamine (anticodon UUG)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

RNA5SP303 Gene

RNA, 5S ribosomal pseudogene 303

RNA5SP301 Gene

RNA, 5S ribosomal pseudogene 301

RNA5SP300 Gene

RNA, 5S ribosomal pseudogene 300

RNA5SP307 Gene

RNA, 5S ribosomal pseudogene 307

RNA5SP306 Gene

RNA, 5S ribosomal pseudogene 306

RNA5SP305 Gene

RNA, 5S ribosomal pseudogene 305

RNA5SP304 Gene

RNA, 5S ribosomal pseudogene 304

RNU2-4P Gene

RNA, U2 small nuclear 4, pseudogene

RNU1-15P Gene

RNA, U1 small nuclear 15, pseudogene

RNU5F-4P Gene

RNA, U5F small nuclear 4, pseudogene

TRA-AGC18-1 Gene

transfer RNA-Ala (AGC) 18-1

TRA-AGC18-2 Gene

transfer RNA-Ala (AGC) 18-2

NEBL-AS1 Gene

NEBL antisense RNA 1

RPARP-AS1 Gene

RPARP antisense RNA 1

SPATA8-AS1 Gene

SPATA8 antisense RNA 1 (head to head)

DNAJC9-AS1 Gene

DNAJC9 antisense RNA 1

PINK1-AS Gene

PINK1 antisense RNA

RNU6ATAC3P Gene

RNA, U6atac small nuclear 3, pseudogene

TRA-AGC3-1 Gene

transfer RNA-Ala (AGC) 3-1

TRC-GCA14-1 Gene

transfer RNA-Cys (GCA) 14-1

TRK-CTT8-1 Gene

transfer RNA-Lys (CTT) 8-1

OTX2-AS1 Gene

OTX2 antisense RNA 1 (head to head)

LINC01176 Gene

long intergenic non-protein coding RNA 1176

LINC01177 Gene

long intergenic non-protein coding RNA 1177

LOC391747 Gene

TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene

Predicted to enable protein heterodimerization activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. [provided by Alliance of Genome Resources, Mar 2025]

TRK-TTT13-1 Gene

transfer RNA-Lys (TTT) 13-1

LIPE-AS1 Gene

LIPE antisense RNA 1

RNU7-72P Gene

RNA, U7 small nuclear 72 pseudogene

SLC25A5-AS1 Gene

SLC25A5 antisense RNA 1

EPHA1-AS1 Gene

EPHA1 antisense RNA 1

CELSR3-AS1 Gene

CELSR3 antisense RNA 1 (head to head)

WNT5A-AS1 Gene

WNT5A antisense RNA 1

FAM222A-AS1 Gene

FAM222A antisense RNA 1

LINC01069 Gene

long intergenic non-protein coding RNA 1069

LINC01065 Gene

long intergenic non-protein coding RNA 1065

FOXD2-AS1 Gene

FOXD2 antisense RNA 1 (head to head)

RBPMS-AS1 Gene

RBPMS antisense RNA 1

TRNASTOP-UUA Gene

transfer RNA ochre suppressor(anticodon UUA)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

ZFRP1 Gene

zinc finger RNA binding protein pseudogene 1

MKLN1-AS Gene

MKLN1 antisense RNA

RNU6-56P Gene

RNA, U6 small nuclear 56, pseudogene

SNORD114-20 Gene

small nucleolar RNA, C/D box 114-20

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

PWRN1 Gene

Prader-Willi region non-protein coding RNA 1

This gene is located in the Prader-Willi syndrome (PWS) region of chromosome 15, which is known to undergo imprinting. The transcript is believed to be non-coding. It is bi-allelically expressed in testis and kidney, but mono-allelically expressed from the paternal allele in brain. This gene is poly-adenylated and is known to undergo alternative splicing. Transcript variants may represent part of a complex imprinting center-SNURF-SNRPN transcription unit. The contribution of this gene to the PWS phenotype is unknown, but it has been suggested that it may play a role in establishing paternal imprinting in the PWS region, perhaps by maintaining the paternal allele in an open chromatin configuration. [provided by RefSeq, Sep 2009]

PWRN2 Gene

Prader-Willi region non-protein coding RNA 2

PWRN3 Gene

Prader-Willi region non-protein coding RNA 3

TRP-TGG2-1 Gene

transfer RNA-Pro (TGG) 2-1

LOC100420108 Gene

RNA binding motif protein 7 pseudogene

SNORD115-21 Gene

small nucleolar RNA, C/D box 115-21

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-20 Gene

small nucleolar RNA, C/D box 115-20

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-23 Gene

small nucleolar RNA, C/D box 115-23

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-22 Gene

small nucleolar RNA, C/D box 115-22

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-25 Gene

small nucleolar RNA, C/D box 115-25

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-24 Gene

small nucleolar RNA, C/D box 115-24

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-27 Gene

small nucleolar RNA, C/D box 115-27

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-26 Gene

small nucleolar RNA, C/D box 115-26

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-29 Gene

small nucleolar RNA, C/D box 115-29

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-28 Gene

small nucleolar RNA, C/D box 115-28

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

PEX5L-AS1 Gene

PEX5L antisense RNA 1

IQCH-AS1 Gene

IQCH antisense RNA 1

ADD3-AS1 Gene

ADD3 antisense RNA 1

REXO1L8P Gene

REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 8, pseudogene

LOC100131448 Gene

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 pseudogene

LINC00862 Gene

long intergenic non-protein coding RNA 862

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

ENTPD1-AS1 Gene

ENTPD1 antisense RNA 1

PPEF1-AS1 Gene

PPEF1 antisense RNA 1

FUS Gene

FUS RNA binding protein

This gene encodes a multifunctional protein component of the heterogeneous nuclear ribonucleoprotein (hnRNP) complex. The hnRNP complex is involved in pre-mRNA splicing and the export of fully processed mRNA to the cytoplasm. This protein belongs to the FET family of RNA-binding proteins which have been implicated in cellular processes that include regulation of gene expression, maintenance of genomic integrity and mRNA/microRNA processing. Alternative splicing results in multiple transcript variants. Defects in this gene result in amyotrophic lateral sclerosis type 6. [provided by RefSeq, Sep 2009]

TRD-GTC2-6 Gene

transfer RNA-Asp (GTC) 2-6

TRD-GTC2-7 Gene

transfer RNA-Asp (GTC) 2-7

TRD-GTC2-2 Gene

transfer RNA-Asp (GTC) 2-2

TRD-GTC2-3 Gene

transfer RNA-Asp (GTC) 2-3

TRD-GTC2-8 Gene

transfer RNA-Asp (GTC) 2-8

LINC00333 Gene

long intergenic non-protein coding RNA 333

LINC00331 Gene

long intergenic non-protein coding RNA 331

RNU3P2 Gene

RNA, U3 small nucleolar pseudogene 2

RNU3P3 Gene

RNA, U3 small nucleolar pseudogene 3

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP118 Gene

RNA, 5S ribosomal pseudogene 118

RNU3P1 Gene

RNA, U3 small nucleolar pseudogene 1

RNU3P4 Gene

RNA, U3 small nucleolar pseudogene 4

RNA5SP112 Gene

RNA, 5S ribosomal pseudogene 112

RNA5SP113 Gene

RNA, 5S ribosomal pseudogene 113

RNA5SP110 Gene

RNA, 5S ribosomal pseudogene 110

RNA5SP111 Gene

RNA, 5S ribosomal pseudogene 111

RNA5SP116 Gene

RNA, 5S ribosomal pseudogene 116

RNA5SP117 Gene

RNA, 5S ribosomal pseudogene 117

RNA5SP114 Gene

RNA, 5S ribosomal pseudogene 114

RNA5SP115 Gene

RNA, 5S ribosomal pseudogene 115

SEMA3B-AS1 Gene

SEMA3B antisense RNA 1 (head to head)

SNHG15 Gene

small nucleolar RNA host gene 15

This gene represents a snoRNA host gene that produces a short-lived long non-coding RNA. This non-coding RNA is upregulated in tumor cells and may contribute to cell proliferation by acting as a sponge for microRNAs. [provided by RefSeq, Dec 2017]

SNHG14 Gene

small nucleolar RNA host gene 14

This gene is located within the Prader-Willi critical region and produces a long, spliced paternally-imprinted RNA that initiates within a common upstream promoter region shared by the SNRPN (small nuclear ribonucleoprotein polypeptide N) and SNURF genes. This transcript serves as a host RNA for the small nucleolar RNA, C/D box 115 and 116 clusters. This RNA extends in antisense into the region of the ubiquitin protein ligase E3A gene (UBE3A), and is thought to regulate imprinted expression of UBE3A in the brain. This transcript undergoes extensive alternative splicing, and may initiate and terminate at multiple locations within this genomic region. The full-length structure of all splice forms is not determined. [provided by RefSeq, Mar 2017]

SNHG17 Gene

small nucleolar RNA host gene 17

SNHG16 Gene

small nucleolar RNA host gene 16

SNHG11 Gene

small nucleolar RNA host gene 11

This gene is a member of the non-protein-coding multiple snoRNA host gene family. Two snoRNAs are derived from the introns of this host gene. Although many alternative splice variants have been observed, the gene is thought to have no protein-coding potential. [provided by RefSeq, Jul 2008]

SNHG12 Gene

small nucleolar RNA host gene 12

This gene produces a long RNA that is overexpressed in tumor cells. This RNA may promote tumorigenesis by acting as a sponge for microRNAs. [provided by RefSeq, Dec 2017]

SNHG19 Gene

small nucleolar RNA host gene 19

SNHG18 Gene

small nucleolar RNA host gene 18

PGM5P3-AS1 Gene

PGM5P3 antisense RNA 1

LINC01468 Gene

long intergenic non-protein coding RNA 1468

RNPS1P1 Gene

RNA binding protein S1, serine-rich domain pseudogene 1

LINC01003 Gene

long intergenic non-protein coding RNA 1003

TRV-AAC3-1 Gene

transfer RNA-Val (AAC) 3-1

SNORA80E Gene

small nucleolar RNA, H/ACA box 80E

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA80B Gene

small nucleolar RNA, H/ACA box 80B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA80A Gene

small nucleolar RNA, H/ACA box 80A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC00618 Gene

long intergenic non-protein coding RNA 618

LINC00619 Gene

long intergenic non-protein coding RNA 619

LINC00610 Gene

long intergenic non-protein coding RNA 610

LINC00612 Gene

long intergenic non-protein coding RNA 612

LINC00613 Gene

long intergenic non-protein coding RNA 613

LINC00614 Gene

long intergenic non-protein coding RNA 614

LINC00615 Gene

long intergenic non-protein coding RNA 615

LINC00616 Gene

long intergenic non-protein coding RNA 616

TRK-TTT12-1 Gene

transfer RNA-Lys (TTT) 12-1

LINC01435 Gene

long intergenic non-protein coding RNA 1435

TRA-AGC14-1 Gene

transfer RNA-Ala (AGC) 14-1

DNM3OS Gene

DNM3 opposite strand/antisense RNA

Enables miRNA inhibitor activity via base-pairing. Involved in cellular response to transforming growth factor beta stimulus and regulation of macromolecule metabolic process. Predicted to be part of RISC complex. [provided by Alliance of Genome Resources, Mar 2025]

ZNF385D-AS2 Gene

ZNF385D antisense RNA 2

NDUFA6-AS1 Gene

NDUFA6 antisense RNA 1 (head to head)

RNMTL1 Gene

RNA methyltransferase like 1

Efficient translation of mitochondrial-derived transcripts requires proper assembly of the large subunit of the mitochondrial ribosome. Central to the biogenesis of this large subunit is the A-loop of mitochondrial 16S rRNA, which is modified by three rRNA methyltransferases located near mtDNA nucleoids. The protein encoded by this gene methylates G(1370) of 16S rRNA, and this modification is necessary for proper ribosomal large subnit assembly. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2015]

BOLL Gene

boule-like RNA-binding protein

This gene belongs to the DAZ gene family required for germ cell development. It encodes an RNA-binding protein which is more similar to Drosophila Boule than to human proteins encoded by genes DAZ (deleted in azoospermia) or DAZL (deleted in azoospermia-like). Loss of this gene function results in the absence of sperm in semen (azoospermia). Histological studies demonstrated that the primary defect is at the meiotic G2/M transition. Two alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

LINC01151 Gene

long intergenic non-protein coding RNA 1151

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRA-TGC4-1 Gene

transfer RNA-Ala (TGC) 4-1

TAF7 Gene

TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa

The intronless gene for this transcription coactivator is located between the protocadherin beta and gamma gene clusters on chromosome 5. The protein encoded by this gene is a component of the TFIID protein complex, a complex which binds to the TATA box in class II promoters and recruits RNA polymerase II and other factors. This particular subunit interacts with the largest TFIID subunit, as well as multiple transcription activators. The protein is required for transcription by promoters targeted by RNA polymerase II. [provided by RefSeq, Jul 2008]

TAF6 Gene

TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes one of the smaller subunits of TFIID that binds weakly to TBP but strongly to TAF1, the largest subunit of TFIID. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2010]

TAF5 Gene

TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes an integral subunit of TFIID associated with all transcriptionally competent forms of that complex. This subunit interacts strongly with two TFIID subunits that show similarity to histones H3 and H4, and it may participate in forming a nucleosome-like core in the TFIID complex. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2015]

TAF4 Gene

TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes one of the larger subunits of TFIID that has been shown to potentiate transcriptional activation by retinoic acid, thyroid hormone and vitamin D3 receptors. In addition, this subunit interacts with the transcription factor CREB, which has a glutamine-rich activation domain, and binds to other proteins containing glutamine-rich regions. Aberrant binding to this subunit by proteins with expanded polyglutamine regions has been suggested as one of the pathogenetic mechanisms underlying a group of neurodegenerative disorders referred to as polyglutamine diseases. [provided by RefSeq, Jul 2008]

TAF3 Gene

TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa

The highly conserved RNA polymerase II transcription factor TFIID (see TAF1; MIM 313650) comprises the TATA box-binding protein (TBP; MIM 600075) and a set of TBP-associated factors (TAFs), including TAF3. TAFs contribute to promoter recognition and selectivity and act as antiapoptotic factors (Gangloff et al., 2001 [PubMed 11438666]).[supplied by OMIM, May 2009]

TAF2 Gene

TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes one of the larger subunits of TFIID that is stably associated with the TFIID complex. It contributes to interactions at and downstream of the transcription initiation site, interactions that help determine transcription complex response to activators. [provided by RefSeq, Jul 2008]

TAF1 Gene

TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is the basal transcription factor TFIID, which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes the largest subunit of TFIID. This subunit binds to core promoter sequences encompassing the transcription start site. It also binds to activators and other transcriptional regulators, and these interactions affect the rate of transcription initiation. This subunit contains two independent protein kinase domains at the N- and C-terminals, but also possesses acetyltransferase activity and can act as a ubiquitin-activating/conjugating enzyme. Mutations in this gene result in Dystonia 3, torsion, X-linked, a dystonia-parkinsonism disorder. Alternative splicing of this gene results in multiple transcript variants. This gene is part of a complex transcription unit (TAF1/DYT3), wherein some transcript variants share exons with TAF1 as well as additional downstream DYT3 exons. [provided by RefSeq, Oct 2013]

TAF9 Gene

TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes one of the smaller subunits of TFIID that binds to the basal transcription factor GTF2B as well as to several transcriptional activators such as p53 and VP16. In human, TAF9 and AK6 (GeneID: 102157402) are two distinct genes that share 5' exons. A similar but distinct gene (TAF9L) has been found on the X chromosome and a pseudogene has been identified on chromosome 19. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]

LINC00968 Gene

long intergenic non-protein coding RNA 968

TRQ-CTG4-1 Gene

transfer RNA-Gln (CTG) 4-1

TRQ-CTG4-2 Gene

transfer RNA-Gln (CTG) 4-2

DIAPH3-AS1 Gene

DIAPH3 antisense RNA 1

DIAPH3-AS2 Gene

DIAPH3 antisense RNA 2

TRNAM-CAU Gene

transfer RNA methionine (anticodon CAU)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

RNU4-9P Gene

RNA, U4 small nuclear 9, pseudogene

RNU6-71P Gene

RNA, U6 small nuclear 71, pseudogene

LINC01005 Gene

long intergenic non-protein coding RNA 1005

LOC100130612 Gene

TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene

SNORA45A Gene

small nucleolar RNA, H/ACA box 45A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

NRG3-AS1 Gene

NRG3 antisense RNA 1

RNU7-22P Gene

RNA, U7 small nuclear 22 pseudogene

TRNAL47P Gene

transfer RNA leucine 47 (anticodon AAG) pseudogene

RNU7-59P Gene

RNA, U7 small nuclear 59 pseudogene

CLSTN2-AS1 Gene

CLSTN2 antisense RNA 1

RNA5SP268 Gene

RNA, 5S ribosomal pseudogene 268

LINC00892 Gene

long intergenic non-protein coding RNA 892

LINC00893 Gene

long intergenic non-protein coding RNA 893

LINC00890 Gene

long intergenic non-protein coding RNA 890

Predicted to be located in membrane. Predicted to be active in intracellular membrane-bounded organelle. [provided by Alliance of Genome Resources, Mar 2025]

LINC00891 Gene

long intergenic non-protein coding RNA 891

LINC00896 Gene

long intergenic non-protein coding RNA 896

LINC00894 Gene

long intergenic non-protein coding RNA 894

LINC00895 Gene

long intergenic non-protein coding RNA 895

LINC00898 Gene

long intergenic non-protein coding RNA 898

LINC00899 Gene

long intergenic non-protein coding RNA 899

RAPGEF4-AS1 Gene

RAPGEF4 antisense RNA 1

TRUND-NNN2-1 Gene

transfer RNA-undetermined (NNN) 2-1

RNA5SP385 Gene

RNA, 5S ribosomal pseudogene 385

ITIH4-AS1 Gene

ITIH4 antisense RNA 1

RNA5SP384 Gene

RNA, 5S ribosomal pseudogene 384

JADRR Gene

JADE1 adjacent regulatory RNA

EIF2B5-AS1 Gene

EIF2B5 antisense RNA 1

LINC01442 Gene

long intergenic non-protein coding RNA 1442

LINC01443 Gene

long intergenic non-protein coding RNA 1443

LINC01440 Gene

long intergenic non-protein coding RNA 1440

LINC01446 Gene

long intergenic non-protein coding RNA 1446

LINC01447 Gene

long intergenic non-protein coding RNA 1447

LINC01444 Gene

long intergenic non-protein coding RNA 1444

LINC01445 Gene

long intergenic non-protein coding RNA 1445

LINC01448 Gene

long intergenic non-protein coding RNA 1448

LINC01449 Gene

long intergenic non-protein coding RNA 1449

SNORD88A Gene

small nucleolar RNA, C/D box 88A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD88B Gene

small nucleolar RNA, C/D box 88B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD88C Gene

small nucleolar RNA, C/D box 88C

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TARBP2P Gene

TAR (HIV-1) RNA binding protein 2 pseudogene

RNU6-26P Gene

RNA, U6 small nuclear 26, pseudogene

TRNAF-GAA Gene

transfer RNA phenylalanine (anticodon GAA)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TRL-AAG2-3 Gene

transfer RNA-Leu (AAG) 2-3

TRL-AAG2-2 Gene

transfer RNA-Leu (AAG) 2-2

TRL-AAG2-1 Gene

transfer RNA-Leu (AAG) 2-1

TRL-AAG2-4 Gene

transfer RNA-Leu (AAG) 2-4

RNA5SP438 Gene

RNA, 5S ribosomal pseudogene 438

RNA5SP434 Gene

RNA, 5S ribosomal pseudogene 434

RNA5SP437 Gene

RNA, 5S ribosomal pseudogene 437

RNA5SP436 Gene

RNA, 5S ribosomal pseudogene 436

RNA5SP431 Gene

RNA, 5S ribosomal pseudogene 431

RNA5SP432 Gene

RNA, 5S ribosomal pseudogene 432

TRA-TGC5-1 Gene

transfer RNA-Ala (TGC) 5-1

RNA5SP383 Gene

RNA, 5S ribosomal pseudogene 383

RNA5SP382 Gene

RNA, 5S ribosomal pseudogene 382

RNA5SP386 Gene

RNA, 5S ribosomal pseudogene 386

RNA5SP388 Gene

RNA, 5S ribosomal pseudogene 388

EPB41L4A-AS1 Gene

EPB41L4A antisense RNA 1

EPB41L4A-AS2 Gene

EPB41L4A antisense RNA 2 (head to head)

TRH-GTG1-8 Gene

transfer RNA-His (GTG) 1-8

PCNA-AS1 Gene

PCNA antisense RNA 1

KMT2E-AS1 Gene

KMT2E antisense RNA 1 (head to head)

SSU72 Gene

SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)

Enables RNA polymerase II CTD heptapeptide repeat phosphatase activity. Involved in co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway. Located in cytosol and nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

RNU6-10P Gene

RNA, U6 small nuclear 10, pseudogene

CBR3-AS1 Gene

CBR3 antisense RNA 1

SNORD114-1 Gene

small nucleolar RNA, C/D box 114-1

Small nucleolar RNAs (snoRNAs), like SNORD114-1, guide the formation of 2-prime O-methylation of ribosomal RNA (rRNA) and U small nuclear RNAs (snRNAs) through a specific RNA duplex at each modification site. SNORD114-1 is 1 of 31 tandem SNORD114 genes on chromosome 14q32 (Cavaille et al., 2002 [PubMed 12045206]).[supplied by OMIM, Nov 2010]

SNORD114-6 Gene

small nucleolar RNA, C/D box 114-6

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-5 Gene

small nucleolar RNA, C/D box 114-5

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-4 Gene

small nucleolar RNA, C/D box 114-4

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRI-AAT3-1 Gene

transfer RNA-Ile (AAT) 3-1

PLCG1-AS1 Gene

PLCG1 antisense RNA 1

STX18-AS1 Gene

STX18 antisense RNA 1 (head to head)

RNU7-41P Gene

RNA, U7 small nuclear 41 pseudogene

SCARNA27 Gene

small Cajal body-specific RNA 27

SCARNA22 Gene

small Cajal body-specific RNA 22

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA23 Gene

small Cajal body-specific RNA 23

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA20 Gene

small Cajal body-specific RNA 20

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA21 Gene

small Cajal body-specific RNA 21

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

ZNF341-AS1 Gene

ZNF341 antisense RNA 1

TARBP2 Gene

TAR (HIV-1) RNA binding protein 2

HIV-1, the causative agent of acquired immunodeficiency syndrome (AIDS), contains an RNA genome that produces a chromosomally integrated DNA during the replicative cycle. Activation of HIV-1 gene expression by the transactivator Tat is dependent on an RNA regulatory element (TAR) located downstream of the transcription initiation site. The protein encoded by this gene binds between the bulge and the loop of the HIV-1 TAR RNA regulatory element and activates HIV-1 gene expression in synergy with the viral Tat protein. Alternative splicing results in multiple transcript variants encoding different isoforms. This gene also has a pseudogene. [provided by RefSeq, Jul 2008]

TARBP1 Gene

TAR (HIV-1) RNA binding protein 1

HIV-1, the causative agent of acquired immunodeficiency syndrome (AIDS), contains an RNA genome that produces a chromosomally integrated DNA during the replicative cycle. Activation of HIV-1 gene expression by the transactivator Tat is dependent on an RNA regulatory element (TAR) located downstream of the transcription initiation site. This element forms a stable stem-loop structure and can be bound by either the protein encoded by this gene or by RNA polymerase II. This protein may act to disengage RNA polymerase II from TAR during transcriptional elongation. Alternatively spliced transcripts of this gene may exist, but their full-length natures have not been determined. [provided by RefSeq, Jul 2008]

RNU6ATAC4P Gene

RNA, U6atac small nuclear 4, pseudogene

CHL1-AS2 Gene

CHL1 antisense RNA 2

CHL1-AS1 Gene

CHL1 antisense RNA 1

LINC00229 Gene

long intergenic non-protein coding RNA 229

LINC00226 Gene

long intergenic non-protein coding RNA 226

LINC00221 Gene

long intergenic non-protein coding RNA 221

LINC00222 Gene

long intergenic non-protein coding RNA 222

ABALON Gene

apoptotic BCL2L1-antisense long non-coding RNA

RNU1-3 Gene

RNA, U1 small nuclear 3

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNU1-2 Gene

RNA, U1 small nuclear 2

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

GK-AS1 Gene

GK antisense RNA 1

LINC00917 Gene

long intergenic non-protein coding RNA 917

LINC00911 Gene

long intergenic non-protein coding RNA 911

LINC00910 Gene

long intergenic non-protein coding RNA 910

TRI-GAT1-1 Gene

transfer RNA-Ile (GAT) 1-1

TRI-GAT1-2 Gene

transfer RNA-Ile (GAT) 1-2

TRI-GAT1-3 Gene

transfer RNA-Ile (GAT) 1-3

TRUND-NNN3-1 Gene

transfer RNA-undetermined (NNN) 3-1

LINC01515 Gene

long intergenic non-protein coding RNA 1515

RNU6-31P Gene

RNA, U6 small nuclear 31, pseudogene

TRQ-CTG3-2 Gene

transfer RNA-Gln (CTG) 3-2

SLC7A11-AS1 Gene

SLC7A11 antisense RNA 1

LOC100507379 Gene

RNA binding motif protein 4 pseudogene

MACC1-AS1 Gene

MACC1 antisense RNA 1

NUP50-AS1 Gene

NUP50 antisense RNA 1 (head to head)

ZNF528-AS1 Gene

ZNF528 antisense RNA 1

LAMP5-AS1 Gene

LAMP5 antisense RNA 1

ABCA9-AS1 Gene

ABCA9 antisense RNA 1

GCSAML-AS1 Gene

GCSAML antisense RNA 1

MYLK-AS1 Gene

MYLK antisense RNA 1

TRNAS-AGA Gene

transfer RNA serine (anticodon AGA)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

RNA5SP192 Gene

RNA, 5S ribosomal pseudogene 192

RNA5SP191 Gene

RNA, 5S ribosomal pseudogene 191

RNA5SP196 Gene

RNA, 5S ribosomal pseudogene 196

RNA5SP197 Gene

RNA, 5S ribosomal pseudogene 197

RNA5SP194 Gene

RNA, 5S ribosomal pseudogene 194

RNA5SP195 Gene

RNA, 5S ribosomal pseudogene 195

RNA5SP198 Gene

RNA, 5S ribosomal pseudogene 198

TRE-TTC7-1 Gene

transfer RNA-Glu (TTC) 7-1

TSPEAR-AS2 Gene

TSPEAR antisense RNA 2

TSPEAR-AS1 Gene

TSPEAR antisense RNA 1

RAB30-AS1 Gene

RAB30 antisense RNA 1 (head to head)

TRA-AGC19-1 Gene

transfer RNA-Ala (AGC) 19-1

SNORD115-5 Gene

small nucleolar RNA, C/D box 115-5

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-2 Gene

small nucleolar RNA, C/D box 115-2

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-3 Gene

small nucleolar RNA, C/D box 115-3

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-8 Gene

small nucleolar RNA, C/D box 115-8

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-9 Gene

small nucleolar RNA, C/D box 115-9

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

PIRC37 Gene

piwi-interacting RNA cluster 37

PIRC35 Gene

piwi-interacting RNA cluster 35

PIRC34 Gene

piwi-interacting RNA cluster 34

PIRC33 Gene

piwi-interacting RNA cluster 33

PIRC32 Gene

piwi-interacting RNA cluster 32

PIRC31 Gene

piwi-interacting RNA cluster 31

PIRC30 Gene

piwi-interacting RNA cluster 30

PIRC39 Gene

piwi-interacting RNA cluster 39

PIRC38 Gene

piwi-interacting RNA cluster 38

AADACL2-AS1 Gene

AADACL2 antisense RNA 1

TRL-AAG6-1 Gene

transfer RNA-Leu (AAG) 6-1

TRI-AAT12-1 Gene

transfer RNA-Ile (AAT) 12-1

OR2A1-AS1 Gene

OR2A1 antisense RNA 1

PRRT3-AS1 Gene

PRRT3 antisense RNA 1

SNORD101 Gene

small nucleolar RNA, C/D box 101

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD100 Gene

small nucleolar RNA, C/D box 100

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD102 Gene

small nucleolar RNA, C/D box 102

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD105 Gene

small nucleolar RNA, C/D box 105

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD104 Gene

small nucleolar RNA, C/D box 104

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD107 Gene

small nucleolar RNA, C/D box 107

Small nucleolar RNAs (snoRNAs) are small non-coding RNAs involved in RNA processing. Box C/D class snoRNAs are involved in site-specific 2-prime-O-ribose methylation of preribosomal RNA precursors. This snoRNA is located in a cluster of genes including the SNURF-SNRPN gene, which serves as a host for multiple snoRNAs. [provided by RefSeq, Oct 2011]

SNORD108 Gene

small nucleolar RNA, C/D box 108

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC01349 Gene

long intergenic non-protein coding RNA 1349

LINC01344 Gene

long intergenic non-protein coding RNA 1344

LINC01347 Gene

long intergenic non-protein coding RNA 1347

LINC01346 Gene

long intergenic non-protein coding RNA 1346

LINC01341 Gene

long intergenic non-protein coding RNA 1341

LINC01340 Gene

long intergenic non-protein coding RNA 1340

LINC01343 Gene

long intergenic non-protein coding RNA 1343

LINC01342 Gene

long intergenic non-protein coding RNA 1342

RBM12B-AS1 Gene

RBM12B antisense RNA 1

RNU7-60P Gene

RNA, U7 small nuclear 60 pseudogene

CARD8-AS1 Gene

CARD8 antisense RNA 1

SP2-AS1 Gene

SP2 antisense RNA 1

TRQ-CTG1-4 Gene

transfer RNA-Gln (CTG) 1-4

TRQ-CTG1-1 Gene

transfer RNA-Gln (CTG) 1-1

TRQ-CTG1-2 Gene

transfer RNA-Gln (CTG) 1-2

TRQ-CTG1-3 Gene

transfer RNA-Gln (CTG) 1-3

TRQ-TTG3-3 Gene

transfer RNA-Gln (TTG) 3-3

TRQ-TTG3-2 Gene

transfer RNA-Gln (TTG) 3-2

TRQ-TTG3-1 Gene

transfer RNA-Gln (TTG) 3-1

PRKRA Gene

protein kinase, interferon-inducible double stranded RNA dependent activator

This gene encodes a protein kinase activated by double-stranded RNA which mediates the effects of interferon in response to viral infection. Mutations in this gene have been associated with dystonia. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2008]

MSC-AS1 Gene

MSC antisense RNA 1

LOC441722 Gene

U2 small nuclear RNA auxiliary factor 1-like 4 pseudogene

LINC01264 Gene

long intergenic non-protein coding RNA 1264

ATP11A-AS1 Gene

ATP11A antisense RNA 1

SNORD23 Gene

small nucleolar RNA, C/D box 23

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

MYHAS Gene

myosin heavy chain gene cluster antisense RNA

Predicted to enable primary miRNA binding activity. Predicted to be involved in response to muscle activity and skeletal muscle fiber development. Predicted to act upstream of or within with a positive effect on gene expression. Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

WT1-AS Gene

WT1 antisense RNA

This gene is located upstream of the Wilms tumor 1 (WT1) gene; these two genes are bi-directionally transcribed from the same promoter region. This gene is imprinted in kidney, with preferential expression from the paternal allele. Imprinting defects at chromosome 11p13 may contribute to tumorigenesis. [provided by RefSeq, May 2014]

TRR-CCG1-2 Gene

transfer RNA-Arg (CCG) 1-2

TRR-CCG1-3 Gene

transfer RNA-Arg (CCG) 1-3

PITRM1-AS1 Gene

PITRM1 antisense RNA 1

APOA1-AS Gene

APOA1 antisense RNA

OVOL1-AS1 Gene

OVOL1 antisense RNA 1

TRR-CCT4-1 Gene

transfer RNA-Arg (CCT) 4-1

NADK2-AS1 Gene

NADK2 antisense RNA 1

LOC100421641 Gene

zinc finger CCHC-type and RNA binding motif 1 pseudogene

EGFLAM-AS4 Gene

EGFLAM antisense RNA 4

EGFLAM-AS1 Gene

EGFLAM antisense RNA 1

FBXL19-AS1 Gene

FBXL19 antisense RNA 1 (head to head)

EGFLAM-AS2 Gene

EGFLAM antisense RNA 2

F10-AS1 Gene

F10 antisense RNA 1

SRP54-AS1 Gene

SRP54 antisense RNA 1 (head to head)

DNAJC27-AS1 Gene

DNAJC27 antisense RNA 1

RNY5P9 Gene

RNA, Ro-associated Y5 pseudogene 9

SNAR-B2 Gene

small ILF3/NF90-associated RNA B2

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNAR-B1 Gene

small ILF3/NF90-associated RNA B1

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

LGALS8-AS1 Gene

LGALS8 antisense RNA 1

VIPR1-AS1 Gene

VIPR1 antisense RNA 1

TRNAV-CAC Gene

transfer RNA valine (anticodon CAC)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TET2-AS1 Gene

TET2 antisense RNA 1

RNU5B-3P Gene

RNA, U5B small nuclear 3, pseudogene

CLIP1-AS1 Gene

CLIP1 antisense RNA 1

LOC100130316 Gene

putative RNA-binding protein 15

DACT3-AS1 Gene

DACT3 antisense RNA 1

ZNF649-AS1 Gene

ZNF649 antisense RNA 1

ZMIZ1-AS1 Gene

ZMIZ1 antisense RNA 1

TRL-CAA1-1 Gene

transfer RNA-Leu (CAA) 1-1

TRL-CAA1-2 Gene

transfer RNA-Leu (CAA) 1-2

LINC00710 Gene

long intergenic non-protein coding RNA 710

TRA-AGC15-1 Gene

transfer RNA-Ala (AGC) 15-1

PKN2-AS1 Gene

PKN2 antisense RNA 1

LINC00498 Gene

long intergenic non-protein coding RNA 498

LINC00499 Gene

long intergenic non-protein coding RNA 499

TRQ-TTG2-1 Gene

transfer RNA-Gln (TTG) 2-1

SYP-AS1 Gene

SYP antisense RNA 1

RNU1-22P Gene

RNA, U1 small nuclear 22, pseudogene

TRQ-CTG5-1 Gene

transfer RNA-Gln (CTG) 5-1

PUM2 Gene

pumilio RNA-binding family member 2

This gene encodes a protein that belongs to a family of RNA-binding proteins. The encoded protein functions as a translational repressor during embryonic development and cell differentiation. This protein is also thought to be a positive regulator of cell proliferation in adipose-derived stem cells. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]

PUM1 Gene

pumilio RNA-binding family member 1

This gene encodes a member of the PUF family, evolutionarily conserved RNA-binding proteins related to the Pumilio proteins of Drosophila and the fem-3 mRNA binding factor proteins of C. elegans. The encoded protein contains a sequence-specific RNA binding domain comprised of eight repeats and N- and C-terminal flanking regions, and serves as a translational regulator of specific mRNAs by binding to their 3' untranslated regions. The evolutionarily conserved function of the encoded protein in invertebrates and lower vertebrates suggests that the human protein may be involved in translational regulation of embryogenesis, and cell development and differentiation. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Jul 2008]

P4HA2-AS1 Gene

P4HA2 antisense RNA 1

RBMY2AP Gene

RNA binding motif protein, Y-linked, family 2, member A pseudogene

BMPR1B-AS1 Gene

BMPR1B antisense RNA 1 (head to head)

TRG-GCC1-5 Gene

transfer RNA-Gly (GCC) 1-5

TRG-GCC1-1 Gene

transfer RNA-Gly (GCC) 1-1

TRG-GCC1-3 Gene

transfer RNA-Gly (GCC) 1-3

TRG-GCC1-2 Gene

transfer RNA-Gly (GCC) 1-2

NLGN4Y-AS1 Gene

NLGN4Y antisense RNA 1

SCARNA5 Gene

small Cajal body-specific RNA 5

Predicted to be involved in RNA processing. Located in Cajal body. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA4 Gene

small Cajal body-specific RNA 4

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RN7SKP8 Gene

RNA, 7SK small nuclear pseudogene 8

RN7SKP9 Gene

RNA, 7SK small nuclear pseudogene 9

RN7SKP6 Gene

RNA, 7SK small nuclear pseudogene 6

RN7SKP7 Gene

RNA, 7SK small nuclear pseudogene 7

RN7SKP4 Gene

RNA, 7SK small nuclear pseudogene 4

RN7SKP5 Gene

RNA, 7SK small nuclear pseudogene 5

RN7SKP2 Gene

RNA, 7SK small nuclear pseudogene 2

RN7SKP3 Gene

RNA, 7SK small nuclear pseudogene 3

SCARNA2 Gene

small Cajal body-specific RNA 2

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

EIF1B-AS1 Gene

EIF1B antisense RNA 1

SNHG3 Gene

small nucleolar RNA host gene 3

Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNHG9 Gene

small nucleolar RNA host gene 9

TRT-TGT6-1 Gene

transfer RNA-Thr (TGT) 6-1

LINC00997 Gene

long intergenic non-protein coding RNA 997

LINC00994 Gene

long intergenic non-protein coding RNA 994

LINC00993 Gene

long intergenic non-protein coding RNA 993

LINC00992 Gene

long intergenic non-protein coding RNA 992

LINC00999 Gene

long intergenic non-protein coding RNA 999

LINC00998 Gene

long intergenic non-protein coding RNA 998

Involved in negative regulation of type I interferon-mediated signaling pathway. Located in endoplasmic reticulum membrane and mitochondrial membrane. [provided by Alliance of Genome Resources, Mar 2025]

TRF-GAA4-1 Gene

transfer RNA-Phe (GAA) 4-1

PIRC111 Gene

piwi-interacting RNA cluster 111

PIRC110 Gene

piwi-interacting RNA cluster 110

PIRC113 Gene

piwi-interacting RNA cluster 113

PIRC112 Gene

piwi-interacting RNA cluster 112

PIRC114 Gene

piwi-interacting RNA cluster 114

RNA5SP144 Gene

RNA, 5S ribosomal pseudogene 144

RNA5SP146 Gene

RNA, 5S ribosomal pseudogene 146

RNU7-80P Gene

RNA, U7 small nuclear 80 pseudogene

TRSUP-TTA3-1 Gene

transfer RNA suppressor (TTA) 3-1

C5ORF66-AS2 Gene

C5orf66 antisense RNA 2

RAET1E-AS1 Gene

RAET1E antisense RNA 1

RNA5SP289 Gene

RNA, 5S ribosomal pseudogene 289

RNA5-8S5 Gene

RNA, 5.8S ribosomal 5

45S ribosomal DNA (rDNA) arrays, or clusters, are present on human chromosomes 13, 14, 15, 21 and 22, designated RNR1 through RNR5, respectively. Each cluster consists of multiple 45S rDNA repeat units that vary in number among individuals and chromosomes, with total diploid copy number estimates ranging from 60 to >800 repeat units in a human genome. The 45S rDNA repeat unit encodes a 45S rRNA precursor, transcribed by RNA polymerase I, which is processed to form the 18S, 5.8S and 28S rRNAs. This gene is a representative copy of the 5.8S ribosomal RNA whose chromosomal location is unknown. [provided by RefSeq, Mar 2017]

URB1-AS1 Gene

URB1 antisense RNA 1 (head to head)

RNU7-11P Gene

RNA, U7 small nuclear 11 pseudogene

TRA-AGC2-1 Gene

transfer RNA-Ala (AGC) 2-1

PIRC65 Gene

piwi-interacting RNA cluster 65

LINC00508 Gene

long intergenic non-protein coding RNA 508

LINC00502 Gene

long intergenic non-protein coding RNA 502

LINC00696 Gene

long intergenic non-protein coding RNA 696

IDI2-AS1 Gene

IDI2 antisense RNA 1

RPL34-AS1 Gene

RPL34 antisense RNA 1 (head to head)

RNA5SP136 Gene

RNA, 5S ribosomal pseudogene 136

RNA5SP137 Gene

RNA, 5S ribosomal pseudogene 137

LOC643605 Gene

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 pseudogene

RN7SL8P Gene

RNA, 7SL, cytoplasmic 8, pseudogene

CHRM3-AS2 Gene

CHRM3 antisense RNA 2

CHRM3-AS1 Gene

CHRM3 antisense RNA 1

SAMD12-AS1 Gene

SAMD12 antisense RNA 1

TRR-TCG5-1 Gene

transfer RNA-Arg (TCG) 5-1

RNA5SP264 Gene

RNA, 5S ribosomal pseudogene 264

RNA5SP265 Gene

RNA, 5S ribosomal pseudogene 265

RNA5SP266 Gene

RNA, 5S ribosomal pseudogene 266

RNA5SP260 Gene

RNA, 5S ribosomal pseudogene 260

RNA5SP262 Gene

RNA, 5S ribosomal pseudogene 262

PRICKLE2-AS1 Gene

PRICKLE2 antisense RNA 1

RNA5SP269 Gene

RNA, 5S ribosomal pseudogene 269

PRICKLE2-AS3 Gene

PRICKLE2 antisense RNA 3

PRICKLE2-AS2 Gene

PRICKLE2 antisense RNA 2

TRK-CTT3-1 Gene

transfer RNA-Lys (CTT) 3-1

AGBL5-AS1 Gene

AGBL5 antisense RNA 1

WDR11-AS1 Gene

WDR11 antisense RNA 1

NFYC-AS1 Gene

NFYC antisense RNA 1

ST3GAL4-AS1 Gene

ST3GAL4 antisense RNA 1 (head to head)

FAM83C-AS1 Gene

FAM83C antisense RNA 1

NIFK-AS1 Gene

NIFK antisense RNA 1

MRGPRG-AS1 Gene

MRGPRG antisense RNA 1

RNASEH2B-AS1 Gene

RNASEH2B antisense RNA 1

RNU7-35P Gene

RNA, U7 small nuclear 35 pseudogene

TRG-TCC2-4 Gene

transfer RNA-Gly (TCC) 2-4

LOC100287275 Gene

C1QTNF9B antisense RNA 1 pseudogene

SNORD45C Gene

small nucleolar RNA, C/D box 45C

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD45B Gene

small nucleolar RNA, C/D box 45B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNU7-68P Gene

RNA, U7 small nuclear 68 pseudogene

ADIRF-AS1 Gene

ADIRF antisense RNA 1

SNORD18A Gene

small nucleolar RNA, C/D box 18A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

PIK3CD-AS2 Gene

PIK3CD antisense RNA 2

SNORD18C Gene

small nucleolar RNA, C/D box 18C

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD18B Gene

small nucleolar RNA, C/D box 18B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC00317 Gene

long intergenic non-protein coding RNA 317

IQCJ-SCHIP1-AS1 Gene

IQCJ-SCHIP1 readthrough antisense RNA 1

PKIA-AS1 Gene

PKIA antisense RNA 1

PXN-AS1 Gene

PXN antisense RNA 1

BVES-AS1 Gene

BVES antisense RNA 1

TRR-CCT7-1 Gene

transfer RNA-Arg (CCT) 7-1

FGF13-AS1 Gene

FGF13 antisense RNA 1

TRT-TGT2-1 Gene

transfer RNA-Thr (TGT) 2-1

LINC01372 Gene

long intergenic non-protein coding RNA 1372

SLC26A4-AS1 Gene

SLC26A4 antisense RNA 1

LINC01068 Gene

long intergenic non-protein coding RNA 1068

LINC01060 Gene

long intergenic non-protein coding RNA 1060

LINC01061 Gene

long intergenic non-protein coding RNA 1061

LINC01063 Gene

long intergenic non-protein coding RNA 1063

BOLA3-AS1 Gene

BOLA3 antisense RNA 1 (head to head)

TRP-AGG4-1 Gene

transfer RNA-Pro (AGG) 4-1

SNORA53 Gene

small nucleolar RNA, H/ACA box 53

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

DLG2-AS1 Gene

DLG2 antisense RNA 1

TRS-AGA3-1 Gene

transfer RNA-Ser (AGA) 3-1

EAF1-AS1 Gene

EAF1 antisense RNA 1

LINC00339 Gene

long intergenic non-protein coding RNA 339

LINC00337 Gene

long intergenic non-protein coding RNA 337

LINC00336 Gene

long intergenic non-protein coding RNA 336

LINC00334 Gene

long intergenic non-protein coding RNA 334

LINC00330 Gene

long intergenic non-protein coding RNA 330

MAGEA8-AS1 Gene

MAGEA8 antisense RNA 1 (head to head)

SMAD1-AS2 Gene

SMAD1 antisense RNA 2

TRS-AGA2-1 Gene

transfer RNA-Ser (AGA) 2-1

SMAD1-AS1 Gene

SMAD1 antisense RNA 1

ZNF350-AS1 Gene

ZNF350 antisense RNA 1

ZNF385D-AS1 Gene

ZNF385D antisense RNA 1

RBM12B Gene

RNA binding motif protein 12B

Enables RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

CERS3-AS1 Gene

CERS3 antisense RNA 1

FMR1-AS1 Gene

FMR1 antisense RNA 1

Predicted to be involved in negative regulation of apoptotic process. [provided by Alliance of Genome Resources, Mar 2025]

NAMA Gene

non-protein coding RNA, associated with MAP kinase pathway and growth arrest

ALDH1L1-AS2 Gene

ALDH1L1 antisense RNA 2

TRR-TCG4-1 Gene

transfer RNA-Arg (TCG) 4-1

LINC01220 Gene

long intergenic non-protein coding RNA 1220

ATP6V0E2-AS1 Gene

ATP6V0E2 antisense RNA 1

LOC100288788 Gene

RNA binding motif protein, X-linked-like 3 pseudogene

TRE-CTC4-1 Gene

transfer RNA-Glu (CTC) 4-1

HS6ST2-AS1 Gene

HS6ST2 antisense RNA 1

LINC00029 Gene

long intergenic non-protein coding RNA 29

MATN1-AS1 Gene

MATN1 antisense RNA 1

TMPO-AS1 Gene

TMPO antisense RNA 1

TRN-GTT16-1 Gene

transfer RNA-Asn (GTT) 16-1

TRN-GTT16-3 Gene

transfer RNA-Asn (GTT) 16-3

TRN-GTT16-2 Gene

transfer RNA-Asn (GTT) 16-2

TRN-GTT16-5 Gene

transfer RNA-Asn (GTT) 16-5

TRN-GTT16-4 Gene

transfer RNA-Asn (GTT) 16-4

TRC-GCA1-1 Gene

transfer RNA-Cys (GCA) 1-1

CHODL-AS1 Gene

CHODL antisense RNA 1

RUNDC3A-AS1 Gene

RUNDC3A antisense RNA 1

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC00674 Gene

long intergenic non-protein coding RNA 674

LINC01268 Gene

long intergenic non-protein coding RNA 1268

POLR2KP1 Gene

polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa pseudogene 1

LINC01266 Gene

long intergenic non-protein coding RNA 1266

LINC01267 Gene

long intergenic non-protein coding RNA 1267

LINC01265 Gene

long intergenic non-protein coding RNA 1265

LINC01260 Gene

long intergenic non-protein coding RNA 1260

SNORA76C Gene

small nucleolar RNA, H/ACA box 76C

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA76A Gene

small nucleolar RNA, H/ACA box 76A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNU7-52P Gene

RNA, U7 small nuclear 52 pseudogene

RNU5A-4P Gene

RNA, U5A small nuclear 4, pseudogene

GLYCTK-AS1 Gene

GLYCTK antisense RNA 1

LINC01232 Gene

long intergenic non-protein coding RNA 1232

KIF9-AS1 Gene

KIF9 antisense RNA 1

SNORD3D Gene

small nucleolar RNA, C/D box 3D

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD3@ Gene

small nucleolar RNA, C/D box 3 cluster

SNORD3A Gene

small nucleolar RNA, C/D box 3A

U3 RNA, an abundant small nucleolar RNA (snoRNA), is thought to play a role in the processing of ribosomal RNA precursors (Bernstein et al., 1983 [PubMed 6186397]).[supplied by OMIM, Jun 2009]

STX17-AS1 Gene

STX17 antisense RNA 1

PAN3-AS1 Gene

PAN3 antisense RNA 1

ZSCAN16-AS1 Gene

ZSCAN16 antisense RNA 1

TRP-AGG5-1 Gene

transfer RNA-Pro (AGG) 5-1

SNORD37 Gene

small nucleolar RNA, C/D box 37

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD34 Gene

small nucleolar RNA, C/D box 34

Predicted to be involved in RNA processing. Predicted to act upstream of or within glucose metabolic process; insulin secretion; and reactive oxygen species metabolic process. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD33 Gene

small nucleolar RNA, C/D box 33

Predicted to be involved in RNA processing. Predicted to act upstream of or within glucose metabolic process; insulin secretion; and reactive oxygen species metabolic process. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD30 Gene

small nucleolar RNA, C/D box 30

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD31 Gene

small nucleolar RNA, C/D box 31

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRK-CTT14-1 Gene

transfer RNA-Lys (CTT) 14-1

TRV-CAC13-1 Gene

transfer RNA-Val (CAC) 13-1

TRUND-NNN1-1 Gene

transfer RNA-undetermined (NNN) 1-1

LINC00094 Gene

long intergenic non-protein coding RNA 94

RNU6-45P Gene

RNA, U6 small nuclear 45, pseudogene

NRON Gene

non-protein coding RNA, repressor of NFAT

Predicted to act upstream of or within negative regulation of dephosphorylation; regulation of calcineurin-NFAT signaling cascade; and regulation of cytokine production. Predicted to be part of ribonucleoprotein complex. [provided by Alliance of Genome Resources, Mar 2025]

TRS-AGA2-4 Gene

transfer RNA-Ser (AGA) 2-4

Hoe et al. (1987) [PubMed 3697066] sequenced a human serine (AGA) tRNA by the dideoxysequencing method and compared it with previously sequenced serine tRNAs.[supplied by OMIM, Sep 2009]

TRS-AGA2-5 Gene

transfer RNA-Ser (AGA) 2-5

TRS-AGA2-2 Gene

transfer RNA-Ser (AGA) 2-2

TRS-AGA2-3 Gene

transfer RNA-Ser (AGA) 2-3

TRS-GCT1-1 Gene

transfer RNA-Ser (GCT) 1-1

GRSF1 Gene

G-rich RNA sequence binding factor 1

The protein encoded by this gene is a cellular protein that binds RNAs containing the G-rich element. The protein is localized in the cytoplasm, and has been shown to stimulate translation of viral mRNAs in vitro. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

TRL-CAA3-1 Gene

transfer RNA-Leu (CAA) 3-1

RNA5SP79 Gene

RNA, 5S ribosomal pseudogene 79

RNA5SP72 Gene

RNA, 5S ribosomal pseudogene 72

RNA5SP73 Gene

RNA, 5S ribosomal pseudogene 73

RNA5SP76 Gene

RNA, 5S ribosomal pseudogene 76

RNA5SP77 Gene

RNA, 5S ribosomal pseudogene 77

RNA5SP74 Gene

RNA, 5S ribosomal pseudogene 74

RNA5SP75 Gene

RNA, 5S ribosomal pseudogene 75

RNU6-34P Gene

RNA, U6 small nuclear 34, pseudogene

RNA5SP352 Gene

RNA, 5S ribosomal pseudogene 352

RNA5SP353 Gene

RNA, 5S ribosomal pseudogene 353

RNA5SP354 Gene

RNA, 5S ribosomal pseudogene 354

RBM8A Gene

RNA binding motif protein 8A

This gene encodes a protein with a conserved RNA-binding motif. The protein is found predominantly in the nucleus, although it is also present in the cytoplasm. It is preferentially associated with mRNAs produced by splicing, including both nuclear mRNAs and newly exported cytoplasmic mRNAs. It is thought that the protein remains associated with spliced mRNAs as a tag to indicate where introns had been present, thus coupling pre- and post-mRNA splicing events. Previously, it was thought that two genes encode this protein, RBM8A and RBM8B; it is now thought that the RBM8B locus is a pseudogene. There are two alternate translation start codons with this gene, which result in two forms of the protein. An allele mutation and a low-frequency noncoding single-nucleotide polymorphism (SNP) in this gene cause thrombocytopenia-absent radius (TAR) syndrome. [provided by RefSeq, Jul 2013]

RBM8B Gene

RNA binding motif protein 8B pseudogene

RNA5SP357 Gene

RNA, 5S ribosomal pseudogene 357

RNA5SP358 Gene

RNA, 5S ribosomal pseudogene 358

RNA5SP359 Gene

RNA, 5S ribosomal pseudogene 359

MKNK1-AS1 Gene

MKNK1 antisense RNA 1

BCYRN1 Gene

brain cytoplasmic RNA 1

This gene, which encodes a neural small non-messenger RNA, is a member of the family of interspersed repetitive DNA, and its product represents an example of a primate tissue-specific RNA polymerase III transcript. The RNA sequence is divided into three domains: a 5' portion homologous to the Alu Lm, a central adenosine-rich region, and the terminal 43-nt nonrepetitive domain. It is believed that this gene was retropositionally generated and recruited into a function regulating dendritic protein biosynthesis. At least two pseudogenes of this gene have been identified. [provided by RefSeq, Jul 2008]

LOC101930161 Gene

RNA polymerase II transcription factor SIII subunit A3-like

LOC101930165 Gene

RNA polymerase II transcription factor SIII subunit A3-like

PTPRG-AS1 Gene

PTPRG antisense RNA 1

TRNAI-UAU Gene

transfer RNA isoleucine (anticodon UAU)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

WWC2-AS1 Gene

WWC2 antisense RNA 1

TTF2 Gene

transcription termination factor, RNA polymerase II

This gene encodes a member of the SWI2/SNF2 family of proteins, which play a critical role in altering protein-DNA interactions. The encoded protein has been shown to have dsDNA-dependent ATPase activity and RNA polymerase II termination activity. This protein interacts with cell division cycle 5-like, associates with human splicing complexes, and plays a role in pre-mRNA splicing. [provided by RefSeq, Jul 2008]

TTF1 Gene

transcription termination factor, RNA polymerase I

This gene encodes a transcription termination factor that is localized to the nucleolus and plays a critical role in ribosomal gene transcription. The encoded protein mediates the termination of RNA polymerase I transcription by binding to Sal box terminator elements downstream of pre-rRNA coding regions. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. This gene shares the symbol/alias 'TFF1' with another gene, NK2 homeobox 1, also known as thyroid transcription factor 1, which plays a role in the regulation of thyroid-specific gene expression. [provided by RefSeq, Apr 2011]

FOXD3-AS1 Gene

FOXD3 antisense RNA 1 (head to head)

NDFIP2-AS1 Gene

NDFIP2 antisense RNA 1

TRE-TTC6-1 Gene

transfer RNA-Glu (TTC) 6-1

C21ORF62-AS1 Gene

C21orf62 antisense RNA 1

LINC01384 Gene

long intergenic non-protein coding RNA 1384

NXF4 Gene

nuclear RNA export factor 4 pseudogene

NXF5 Gene

nuclear RNA export factor 5

This gene is one member of a family of nuclear RNA export factor genes. Most transcript variants are candidates for nonsense-mediated decay (NMD) and may not express proteins in vivo. [provided by RefSeq, Sep 2022]

NXF1 Gene

nuclear RNA export factor 1

This gene is one member of a family of nuclear RNA export factor genes. Common domain features of this family are a noncanonical RNP-type RNA-binding domain (RBD), 4 leucine-rich repeats (LRRs), a nuclear transport factor 2 (NTF2)-like domain that allows heterodimerization with NTF2-related export protein-1 (NXT1), and a ubiquitin-associated domain that mediates interactions with nucleoporins. The LRRs and NTF2-like domains are required for export activity. Alternative splicing seems to be a common mechanism in this gene family. The encoded protein of this gene shuttles between the nucleus and the cytoplasm and binds in vivo to poly(A)+ RNA. It is the vertebrate homologue of the yeast protein Mex67p. The encoded protein overcomes the mRNA export block caused by the presence of saturating amounts of CTE (constitutive transport element) RNA of type D retroviruses. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2008]

NXF2 Gene

nuclear RNA export factor 2

This gene encodes a member of a family of nuclear RNA export proteins. The encoded protein is associated with the nuclear envelope and aids in the export of mRNAs. There is a closely related paralog of this gene located adjacent on chromosome X and on the opposite strand. [provided by RefSeq, Aug 2013]

NXF3 Gene

nuclear RNA export factor 3

This gene is one member of a family of nuclear RNA export factor genes. Common domain features of this family are a noncanonical RNP-type RNA-binding domain (RBD), 4 leucine-rich repeats (LRRs), a nuclear transport factor 2 (NTF2)-like domain that allows heterodimerization with NTF2-related export protein-1 (NXT1), and a ubiquitin-associated domain that mediates interactions with nucleoporins. The LRRs and NTF2-like domains are required for export activity. Alternative splicing seems to be a common mechanism in this gene family. The encoded protein of this gene has shortened LRR and ubiquitin-associated domains and its RDB is unable to bind RNA. It is located in the nucleoplasm but is not associated with either the nuclear envelope or the nucleolus. [provided by RefSeq, Jul 2008]

LINC00587 Gene

long intergenic non-protein coding RNA 587

LINC00581 Gene

long intergenic non-protein coding RNA 581

LINC00582 Gene

long intergenic non-protein coding RNA 582

LINC00583 Gene

long intergenic non-protein coding RNA 583

LINC00588 Gene

long intergenic non-protein coding RNA 588

LINC00589 Gene

long intergenic non-protein coding RNA 589

LINC01189 Gene

long intergenic non-protein coding RNA 1189

LINC01183 Gene

long intergenic non-protein coding RNA 1183

LINC01182 Gene

long intergenic non-protein coding RNA 1182

LINC01181 Gene

long intergenic non-protein coding RNA 1181

LINC01187 Gene

long intergenic non-protein coding RNA 1187

LINC01186 Gene

long intergenic non-protein coding RNA 1186

LINC01185 Gene

long intergenic non-protein coding RNA 1185

RAP2C-AS1 Gene

RAP2C antisense RNA 1

TRA-CGC1-1 Gene

transfer RNA-Ala (CGC) 1-1

RNY4P19 Gene

RNA, Ro-associated Y4 pseudogene 19

RNY4P18 Gene

RNA, Ro-associated Y4 pseudogene 18

RNY4P14 Gene

RNA, Ro-associated Y4 pseudogene 14

RNY4P17 Gene

RNA, Ro-associated Y4 pseudogene 17

LINC-PINT Gene

long intergenic non-protein coding RNA, p53 induced transcript

Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

RNY4P11 Gene

RNA, Ro-associated Y4 pseudogene 11

RNY4P10 Gene

RNA, Ro-associated Y4 pseudogene 10

RNY4P13 Gene

RNA, Ro-associated Y4 pseudogene 13

DLEU7-AS1 Gene

DLEU7 antisense RNA 1

LSM1P1 Gene

LSM1, U6 small nuclear RNA associated pseudogene 1

LOC102724677 Gene

carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 pseudogene

LINC00378 Gene

long intergenic non-protein coding RNA 378

RUVBL1-AS1 Gene

RUVBL1 antisense RNA 1

SPAG5-AS1 Gene

SPAG5 antisense RNA 1

DNAJC3-AS1 Gene

DNAJC3 antisense RNA 1 (head to head)

HOXC13-AS Gene

HOXC13 antisense RNA

SIX3-AS1 Gene

SIX3 antisense RNA 1

Predicted to be involved in regulation of gene expression. [provided by Alliance of Genome Resources, Mar 2025]

TARID Gene

TCF21 antisense RNA inducing promoter demethylation

STEAP3-AS1 Gene

STEAP3 antisense RNA 1

RNU6-55P Gene

RNA, U6 small nuclear 55, pseudogene

RHPN1-AS1 Gene

RHPN1 antisense RNA 1 (head to head)

TRX-CAT3-1 Gene

transfer RNA-iMet (CAT) 3-1

CECR5-AS1 Gene

CECR5 antisense RNA 1

CSTF1 Gene

cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa

This gene encodes one of three subunits which combine to form cleavage stimulation factor (CSTF). CSTF is involved in the polyadenylation and 3'end cleavage of pre-mRNAs. Similar to mammalian G protein beta subunits, this protein contains transducin-like repeats. Several transcript variants with different 5' UTR, but encoding the same protein, have been found for this gene. [provided by RefSeq, Jul 2008]

CSTF3 Gene

cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa

The protein encoded by this gene is one of three (including CSTF1 and CSTF2) cleavage stimulation factors that combine to form the cleavage stimulation factor complex (CSTF). This complex is involved in the polyadenylation and 3' end cleavage of pre-mRNAs. The encoded protein functions as a homodimer and interacts directly with both CSTF1 and CSTF2 in the CSTF complex. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]

CSTF2 Gene

cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa

This gene encodes a nuclear protein with an RRM (RNA recognition motif) domain. The protein is a member of the cleavage stimulation factor (CSTF) complex that is involved in the 3' end cleavage and polyadenylation of pre-mRNAs. Specifically, this protein binds GU-rich elements within the 3'-untranslated region of mRNAs. [provided by RefSeq, Jul 2008]

TRV-CAC10-1 Gene

transfer RNA-Val (CAC) 10-1

UPK1A-AS1 Gene

UPK1A antisense RNA 1

SNORA19 Gene

small nucleolar RNA, H/ACA box 19

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA18 Gene

small nucleolar RNA, H/ACA box 18

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA15 Gene

small nucleolar RNA, H/ACA box 15

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA17 Gene

small nucleolar RNA, H/ACA box 17

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA12 Gene

small nucleolar RNA, H/ACA box 12

Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SNORA12, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]

MFI2-AS1 Gene

MFI2 antisense RNA 1

LINC01119 Gene

long intergenic non-protein coding RNA 1119

CLRN1-AS1 Gene

CLRN1 antisense RNA 1

TTN-AS1 Gene

TTN antisense RNA 1

This gene encodes a non-coding RNA transcribed from the opposite strand to the titin gene. [provided by RefSeq, Aug 2016]

TRG-TCC3-1 Gene

transfer RNA-Gly (TCC) 3-1

KCND3-AS1 Gene

KCND3 antisense RNA 1

RNY5 Gene

RNA, Ro-associated Y5

Biomarker of congestive heart failure. [provided by Alliance of Genome Resources, Mar 2025]

RNY4 Gene

RNA, Ro-associated Y4

RNY1 Gene

RNA, Ro-associated Y1

Y RNAs are small noncoding RNAs that were originally identified as the RNA component of soluble ribonucleoproteins (RNPs) termed Ro RNPs. Ro RNPs are detected by autoimmune sera of patients suffering from rheumatic diseases, such as from systemic lupus erythematosus (MIM 152700) and Sjogren syndrome (MIM 270200). Ro RNPs consist of a Y RNA that is associated with the autoimmune antigen proteins Ro60 (TROVE2; MIM 600063) and La (SSB; MIM 109090), as well as other proteins. Four human Y RNAs have been identified: Y1, Y3 (RNY3; MIM 601822), Y4 (RNY4; MIM 601823), and Y5 (RNY5; MIM 601824). (Y2 is a truncated form of Y1.) Y RNAs are transcribed by RNA polymerase III and range in size from 83 to 112 nucleotides. They appear to have a functional role in chromosomal DNA replication (Christov et al., 2006 [PubMed 16943439]).[supplied by OMIM, Apr 2009]

CSTF3-AS1 Gene

CSTF3 antisense RNA 1 (head to head)

PIRC86 Gene

piwi-interacting RNA cluster 86

PIRC87 Gene

piwi-interacting RNA cluster 87

PIRC84 Gene

piwi-interacting RNA cluster 84

PIRC85 Gene

piwi-interacting RNA cluster 85

PIRC80 Gene

piwi-interacting RNA cluster 80

PIRC88 Gene

piwi-interacting RNA cluster 88

LINC01578 Gene

long intergenic non-protein coding RNA 1578

Predicted to be involved in several processes, including adipose tissue development; regulation of gene expression; and thymus development. Predicted to be active in chromatin and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

LINC01579 Gene

long intergenic non-protein coding RNA 1579

LINC01574 Gene

long intergenic non-protein coding RNA 1574

LINC01572 Gene

long intergenic non-protein coding RNA 1572

LINC01573 Gene

long intergenic non-protein coding RNA 1573

LINC01570 Gene

long intergenic non-protein coding RNA 1570

LINC01571 Gene

long intergenic non-protein coding RNA 1571

RNU5F-7P Gene

RNA, U5F small nuclear 7, pseudogene

Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

ASTN2-AS1 Gene

ASTN2 antisense RNA 1

LINC01398 Gene

long intergenic non-protein coding RNA 1398

LINC01399 Gene

long intergenic non-protein coding RNA 1399

LINC01392 Gene

long intergenic non-protein coding RNA 1392

LINC01393 Gene

long intergenic non-protein coding RNA 1393

LINC01391 Gene

long intergenic non-protein coding RNA 1391

LINC01396 Gene

long intergenic non-protein coding RNA 1396

LINC01397 Gene

long intergenic non-protein coding RNA 1397

LINC01395 Gene

long intergenic non-protein coding RNA 1395

LINC00621 Gene

long intergenic non-protein coding RNA 621

LINC00620 Gene

long intergenic non-protein coding RNA 620

LINC00623 Gene

long intergenic non-protein coding RNA 623

TRAF3IP2-AS1 Gene

TRAF3IP2 antisense RNA 1

LINC00624 Gene

long intergenic non-protein coding RNA 624

LINC00626 Gene

long intergenic non-protein coding RNA 626

LINC00629 Gene

long intergenic non-protein coding RNA 629

LINC00628 Gene

long intergenic non-protein coding RNA 628

HNF4A-AS1 Gene

HNF4A antisense RNA 1

DMD-AS3 Gene

DMD antisense RNA 3

TRI-AAT6-1 Gene

transfer RNA-Ile (AAT) 6-1

TRE-CTC1-7 Gene

transfer RNA-Glu (CTC) 1-7

TRE-CTC1-1 Gene

transfer RNA-Glu (CTC) 1-1

TRE-CTC1-2 Gene

transfer RNA-Glu (CTC) 1-2

LOC643167 Gene

RNA binding motif protein 39 pseudogene

TRY-GTA2-1 Gene

transfer RNA-Tyr (GTA) 2-1

RNU7-19P Gene

RNA, U7 small nuclear 19 pseudogene

RUSC1-AS1 Gene

RUSC1 antisense RNA 1

RNU7-78P Gene

RNA, U7 small nuclear 78 pseudogene

GTF3C2-AS1 Gene

GTF3C2 antisense RNA 1

SLC8A1-AS1 Gene

SLC8A1 antisense RNA 1

ADNP-AS1 Gene

ADNP antisense RNA 1

TRK-CTT2-1 Gene

transfer RNA-Lys (CTT) 2-1

TRK-CTT2-2 Gene

transfer RNA-Lys (CTT) 2-2

TRK-CTT2-3 Gene

transfer RNA-Lys (CTT) 2-3

TRK-CTT2-5 Gene

transfer RNA-Lys (CTT) 2-5

RNU4ATAC Gene

RNA, U4atac small nuclear (U12-dependent splicing)

The small nuclear RNA (snRNA) encoded by this gene is part of the U12-dependent minor spliceosome complex. In addition to the encoded RNA, this ribonucleoprotein complex consists of U11, U12, U5, and U6atac snRNAs. The U12-dependent spliceosome acts on approximately 700 specific introns in the human genome. Defects in this gene are a cause of microcephalic osteodysplastic primordial dwarfism type 1 (MOPD). [provided by RefSeq, Jul 2011]

NAALADL2-AS2 Gene

NAALADL2 antisense RNA 2

NAALADL2-AS3 Gene

NAALADL2 antisense RNA 3

NAALADL2-AS1 Gene

NAALADL2 antisense RNA 1

RNA5SP505 Gene

RNA, 5S ribosomal pseudogene 505

RNA5SP504 Gene

RNA, 5S ribosomal pseudogene 504

MCPH1-AS1 Gene

MCPH1 antisense RNA 1

RNA5SP503 Gene

RNA, 5S ribosomal pseudogene 503

GATA2-AS1 Gene

GATA2 antisense RNA 1

HPN-AS1 Gene

HPN antisense RNA 1

LOC100131597 Gene

phosphorylated adaptor for RNA export pseudogene

RNU7-25P Gene

RNA, U7 small nuclear 25 pseudogene

PACRG-AS1 Gene

PACRG antisense RNA 1

LMLN-AS1 Gene

LMLN antisense RNA 1

TRA-AGC23-1 Gene

transfer RNA-Ala (AGC) 23-1

GLE1 Gene

GLE1 RNA export mediator

This gene encodes a predicted 75-kDa polypeptide with high sequence and structure homology to yeast Gle1p, which is nuclear protein with a leucine-rich nuclear export sequence essential for poly(A)+RNA export. Inhibition of human GLE1L by microinjection of antibodies against GLE1L in HeLa cells resulted in inhibition of poly(A)+RNA export. Immunoflourescence studies show that GLE1L is localized at the nuclear pore complexes. This localization suggests that GLE1L may act at a terminal step in the export of mature RNA messages to the cytoplasm. Two alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

LOC100652931 Gene

RNA binding motif protein, Y-linked, family 1, member A1 pseudogene

LINC00265-2P Gene

long intergenic non-protein coding RNA 265-2, pseudogene

ABHD15-AS1 Gene

ABHD15 antisense RNA 1

LINC00869 Gene

long intergenic non-protein coding RNA 869

LINC00868 Gene

long intergenic non-protein coding RNA 868

LINC00867 Gene

long intergenic non-protein coding RNA 867

LINC00866 Gene

long intergenic non-protein coding RNA 866

LINC01180 Gene

long intergenic non-protein coding RNA 1180

LINC01184 Gene

long intergenic non-protein coding RNA 1184

LINC00936 Gene

long intergenic non-protein coding RNA 936

RNU7-81P Gene

RNA, U7 small nuclear 81 pseudogene

TRP-AGG2-3 Gene

transfer RNA-Pro (AGG) 2-3

TRP-AGG2-8 Gene

transfer RNA-Pro (AGG) 2-8

FLNB-AS1 Gene

FLNB antisense RNA 1

COL18A1-AS1 Gene

COL18A1 antisense RNA 1

TRL-CAA4-1 Gene

transfer RNA-Leu (CAA) 4-1

CADM2-AS2 Gene

CADM2 antisense RNA 2

CADM2-AS1 Gene

CADM2 antisense RNA 1

RPUSD4 Gene

RNA pseudouridylate synthase domain containing 4

Enables mitochondrial ribosomal large subunit rRNA binding activity; pseudouridine synthase activity; and tRNA binding activity. Involved in positive regulation of mitochondrial translation and pseudouridine synthesis. Located in mitochondrial matrix; nucleoplasm; and ribonucleoprotein granule. [provided by Alliance of Genome Resources, Mar 2025]

LOC102725121 Gene

putative ATP-dependent RNA helicase DDX12

AP4B1-AS1 Gene

AP4B1 antisense RNA 1

SNAR-C3 Gene

small ILF3/NF90-associated RNA C3

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

RNU6-23P Gene

RNA, U6 small nuclear 23, pseudogene

RNU7-10P Gene

RNA, U7 small nuclear 10 pseudogene

CTDSP1 Gene

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1

This gene encodes a member of the small C-terminal domain phosphatase (SCP) family of nuclear phosphatases. These proteins play a role in transcriptional regulation through specific dephosphorylation of phosphoserine 5 within tandem heptapeptide repeats of the C-terminal domain of RNA polymerase II. The encoded protein plays a role in neuronal gene silencing in non-neuronal cells, and may also inhibit osteoblast differentiation. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Oct 2011]

CTDSP2 Gene

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2

Enables RNA polymerase II CTD heptapeptide repeat phosphatase activity. Involved in protein dephosphorylation. Predicted to be located in nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

CTDSPL Gene

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like

Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in chromatin remodeling and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of G1/S transition of mitotic cell cycle and negative regulation of protein phosphorylation. Located in extracellular exosome. Biomarker of lung non-small cell carcinoma. [provided by Alliance of Genome Resources, Mar 2025]

TRG-GCC1-4 Gene

transfer RNA-Gly (GCC) 1-4

LINC00470 Gene

long intergenic non-protein coding RNA 470

LINC00472 Gene

long intergenic non-protein coding RNA 472

LINC00473 Gene

long intergenic non-protein coding RNA 473

Involved in DNA-templated transcription. [provided by Alliance of Genome Resources, Mar 2025]

LINC00474 Gene

long intergenic non-protein coding RNA 474

LINC00475 Gene

long intergenic non-protein coding RNA 475

LINC00476 Gene

long intergenic non-protein coding RNA 476

LINC00477 Gene

long intergenic non-protein coding RNA 477

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

LINC00479 Gene

long intergenic non-protein coding RNA 479

RBMY2QP Gene

RNA binding motif protein, Y-linked, family 2, member Q pseudogene

NCOA7-AS1 Gene

NCOA7 antisense RNA 1

RNY4P15 Gene

RNA, Ro-associated Y4 pseudogene 15

RNY4P16 Gene

RNA, Ro-associated Y4 pseudogene 16

RBM15B Gene

RNA binding motif protein 15B

Members of the SPEN (Split-end) family of proteins, including RBM15B, have repressor function in several signaling pathways and may bind to RNA through interaction with spliceosome components (Hiriart et al., 2005 [PubMed 16129689]).[supplied by OMIM, Feb 2009]

TRA-TGC8-1 Gene

transfer RNA-Ala (TGC) 8-1

RNU7-20P Gene

RNA, U7 small nuclear 20 pseudogene

XIRP2-AS1 Gene

XIRP2 antisense RNA 1

SNORD116-10 Gene

small nucleolar RNA, C/D box 116-10

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-12 Gene

small nucleolar RNA, C/D box 116-12

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP462 Gene

RNA, 5S ribosomal pseudogene 462

RNA5SP463 Gene

RNA, 5S ribosomal pseudogene 463

RNA5SP460 Gene

RNA, 5S ribosomal pseudogene 460

RNA5SP461 Gene

RNA, 5S ribosomal pseudogene 461

RNA5SP466 Gene

RNA, 5S ribosomal pseudogene 466

RNA5SP467 Gene

RNA, 5S ribosomal pseudogene 467

RNA5SP464 Gene

RNA, 5S ribosomal pseudogene 464

RNA5SP465 Gene

RNA, 5S ribosomal pseudogene 465

RNA5SP469 Gene

RNA, 5S ribosomal pseudogene 469

TAF1A-AS1 Gene

TAF1A antisense RNA 1

RNA5SP395 Gene

RNA, 5S ribosomal pseudogene 395

ABCC5-AS1 Gene

ABCC5 antisense RNA 1

TRW-CCA7-1 Gene

transfer RNA-Trp (CCA) 7-1

RNU7-6P Gene

RNA, U7 small nuclear 6 pseudogene

MCM3AP-AS1 Gene

MCM3AP antisense RNA 1

RNA5SP368 Gene

RNA, 5S ribosomal pseudogene 368

INHBA-AS1 Gene

INHBA antisense RNA 1

PLCH1-AS1 Gene

PLCH1 antisense RNA 1

LINC01103 Gene

long intergenic non-protein coding RNA 1103

LINC01102 Gene

long intergenic non-protein coding RNA 1102

LINC01101 Gene

long intergenic non-protein coding RNA 1101

LINC01100 Gene

long intergenic non-protein coding RNA 1100

LINC01107 Gene

long intergenic non-protein coding RNA 1107

LINC01106 Gene

long intergenic non-protein coding RNA 1106

LINC01105 Gene

long intergenic non-protein coding RNA 1105

LINC01104 Gene

long intergenic non-protein coding RNA 1104

LINC01109 Gene

long intergenic non-protein coding RNA 1109

LINC01108 Gene

long intergenic non-protein coding RNA 1108

RNU7-77P Gene

RNA, U7 small nuclear 77 pseudogene

GRTP1-AS1 Gene

GRTP1 antisense RNA 1

XXYLT1-AS1 Gene

XXYLT1 antisense RNA 1

LINC00278 Gene

long intergenic non-protein coding RNA 278

LINC00279 Gene

long intergenic non-protein coding RNA 279

ARRDC3-AS1 Gene

ARRDC3 antisense RNA 1

CIRBP Gene

cold inducible RNA binding protein

Enables mRNA 3'-UTR binding activity and small ribosomal subunit rRNA binding activity. Involved in mRNA stabilization; positive regulation of translation; and response to UV. Located in cytoplasm and nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

LINC00708 Gene

long intergenic non-protein coding RNA 708

LINC00709 Gene

long intergenic non-protein coding RNA 709

TAF5L Gene

TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa

The product of this gene belongs to the WD-repeat TAF5 family of proteins. This gene encodes a protein that is a component of the PCAF histone acetylase complex. The PCAF histone acetylase complex, which is composed of more than 20 polypeptides some of which are TAFs, is required for myogenic transcription and differentiation. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors to facilitate complex assembly and transcription initiation. The encoded protein is structurally similar to one of the histone-like TAFs, TAF5. Alternatively spliced transcript variants encoding different isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]

RN7SK Gene

RNA, 7SK small nuclear

Predicted to be involved in negative regulation of transcription elongation by RNA polymerase II. Part of 7SK snRNP. [provided by Alliance of Genome Resources, Mar 2025]

TRD-GTC9-1 Gene

transfer RNA-Asp (GTC) 9-1

LINC00702 Gene

long intergenic non-protein coding RNA 702

SNORA36A Gene

small nucleolar RNA, H/ACA box 36A

Biosynthesis of stable cellular RNAs such as tRNAs, rRNAs, snRNAs, and snoRNAs is aided by covalent nucleotide modification after transcription. The modified nucleotides are involved in correct RNA folding, establishment of correct RNA-RNA and RNA-protein interactions, and in the correct function of mature RNAs. The RNA encoded by this gene is thought to mediate the pseudouridylation of residues U105 and U1244 of 18S rRNA. [provided by RefSeq, Feb 2009]

TRV-CAC12-1 Gene

transfer RNA-Val (CAC) 12-1

ZFR Gene

zinc finger RNA binding protein

This gene encodes an RNA-binding protein characterized by its DZF (domain associated with zinc fingers) domain. The encoded protein may play a role in the nucleocytoplasmic shuttling of another RNA-binding protein, Staufen homolog 2, in neurons. Expression of this gene is regulated through alternative polyadenylation that mediates differential microRNA targeting. Elevated expression of this gene has been observed in human patients with pancreatic cancer and knockdown of this gene may result in reduced viability and invasion of pancreatic cancer cells. [provided by RefSeq, Sep 2016]

TRU-TCA1-1 Gene

transfer RNA-SeC (TCA) 1-1

Opal suppressor phosphoserine tRNAs are the only authentic, naturally occurring suppressor tRNAs in higher eukaryotes. The human genome contains a single opal suppressor phosphoserine tRNA gene, TRNAU1 (O'Neill et al., 1985 [PubMed 3156131]).[supplied by OMIM, Nov 2010]

BAALC-AS1 Gene

BAALC antisense RNA 1

BAALC-AS2 Gene

BAALC antisense RNA 2

TRN-ATT1-2 Gene

transfer RNA-Asn (ATT) 1-2

SNAR-A14 Gene

small ILF3/NF90-associated RNA A14

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNAR-A11 Gene

small ILF3/NF90-associated RNA A11

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNAR-A10 Gene

small ILF3/NF90-associated RNA A10

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

CACNA1C-AS1 Gene

CACNA1C antisense RNA 1

C8ORF37-AS1 Gene

C8orf37 antisense RNA 1

PLCL2-AS1 Gene

PLCL2 antisense RNA 1

RDH10-AS1 Gene

RDH10 antisense RNA 1

RNA5SP163 Gene

RNA, 5S ribosomal pseudogene 163

TOB1-AS1 Gene

TOB1 antisense RNA 1

RNA5SP160 Gene

RNA, 5S ribosomal pseudogene 160

RNA5SP166 Gene

RNA, 5S ribosomal pseudogene 166

RNA5SP165 Gene

RNA, 5S ribosomal pseudogene 165

DBH-AS1 Gene

DBH antisense RNA 1

SLC14A2-AS1 Gene

SLC14A2 antisense RNA 1

SNORD3C Gene

small nucleolar RNA, C/D box 3C

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD105B Gene

small nucleolar RNA, C/D box 105B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S9 Gene

RNA, 5S ribosomal 9

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S8 Gene

RNA, 5S ribosomal 8

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S4 Gene

RNA, 5S ribosomal 4

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S7 Gene

RNA, 5S ribosomal 7

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S6 Gene

RNA, 5S ribosomal 6

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S1 Gene

RNA, 5S ribosomal 1

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S3 Gene

RNA, 5S ribosomal 3

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S2 Gene

RNA, 5S ribosomal 2

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

TRI-AAT7-1 Gene

transfer RNA-Ile (AAT) 7-1

TRI-AAT7-2 Gene

transfer RNA-Ile (AAT) 7-2

TRNAA-UGC Gene

transfer RNA alanine (anticodon UGC)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TRR-TCG2-1 Gene

transfer RNA-Arg (TCG) 2-1

TRC-GCA4-1 Gene

transfer RNA-Cys (GCA) 4-1

TRT-CGT1-1 Gene

transfer RNA-Thr (CGT) 1-1

LINC01312 Gene

long intergenic non-protein coding RNA 1312

LINC01310 Gene

long intergenic non-protein coding RNA 1310

LINC01311 Gene

long intergenic non-protein coding RNA 1311

TRAPPC12-AS1 Gene

TRAPPC12 antisense RNA 1

LINC01314 Gene

long intergenic non-protein coding RNA 1314

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

LINC01315 Gene

long intergenic non-protein coding RNA 1315

MEF2C-AS1 Gene

MEF2C antisense RNA 1

POLR1A Gene

polymerase (RNA) I polypeptide A, 194kDa

The protein encoded by this gene is the largest subunit of the RNA polymerase I complex. The encoded protein represents the catalytic subunit of the complex, which transcribes DNA into ribosomal RNA precursors. Defects in this gene are a cause of the Cincinnati type of acrofacial dysostosis. [provided by RefSeq, May 2016]

POLR1B Gene

polymerase (RNA) I polypeptide B, 128kDa

Eukaryotic RNA polymerase I (pol I) is responsible for the transcription of ribosomal RNA (rRNA) genes and production of rRNA, the primary component of ribosomes. Pol I is a multisubunit enzyme composed of 6 to 14 polypeptides, depending on the species. Most of the mass of the pol I complex derives from the 2 largest subunits, Rpa1 and Rpa2 in yeast. POLR1B is homologous to Rpa2 (Seither and Grummt, 1996 [PubMed 8921381]).[supplied by OMIM, Mar 2008]

POLR1C Gene

polymerase (RNA) I polypeptide C, 30kDa

The protein encoded by this gene is a subunit of both RNA polymerase I and RNA polymerase III complexes. The encoded protein is part of the Pol core element. Mutations in this gene have been associated with Treacher Collins syndrome (TCS) and hypomyelinating leukodystrophy 11. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2016]

POLR1D Gene

polymerase (RNA) I polypeptide D, 16kDa

The protein encoded by this gene is a component of the RNA polymerase I and RNA polymerase III complexes, which function in the synthesis of ribosomal RNA precursors and small RNAs, respectively. Mutations in this gene are a cause of Treacher Collins syndrome (TCS), a craniofacial development disorder. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2011]

POLR1E Gene

polymerase (RNA) I polypeptide E, 53kDa

Predicted to enable DNA binding activity and RNA polymerase I general transcription initiation factor binding activity. Involved in nucleolar large rRNA transcription by RNA polymerase I and transcription initiation at RNA polymerase I promoter. Located in fibrillar center and nucleoplasm. Part of RNA polymerase I complex. [provided by Alliance of Genome Resources, Mar 2025]

ADAMTS9-AS1 Gene

ADAMTS9 antisense RNA 1

RPAP2P1 Gene

RNA polymerase II associated protein 2 pseudogene 1

ELL3 Gene

elongation factor RNA polymerase II-like 3

Predicted to enable cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of DNA-templated transcription and transcription by RNA polymerase II. Located in several cellular components, including chromosome; cytosol; and nuclear lumen. Part of transcription elongation factor complex. [provided by Alliance of Genome Resources, Mar 2025]

ELL2 Gene

elongation factor, RNA polymerase II, 2

Predicted to enable cis-regulatory region sequence-specific DNA binding activity. Involved in snRNA transcription by RNA polymerase II. Located in nucleoplasm. Part of transcription elongation factor complex. [provided by Alliance of Genome Resources, Mar 2025]

TRD-GTC8-1 Gene

transfer RNA-Asp (GTC) 8-1

RNU5D-1 Gene

RNA, U5D small nuclear 1

Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4/U6 x U5 tri-snRNP complex and U5 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

LCMT1-AS2 Gene

LCMT1 antisense RNA 2

UBE2Q1-AS1 Gene

UBE2Q1 antisense RNA 1

LCMT1-AS1 Gene

LCMT1 antisense RNA 1

GHRLOS Gene

ghrelin opposite strand/antisense RNA

This gene is an antisense gene of the ghrelin/obestatin prepropeptide gene. Alternatively spliced transcript variants have been identified and they may function as non-coding regulatory RNAs. [provided by RefSeq, Jan 2013]

DDR1-AS1 Gene

DDR1 antisense RNA 1 (head to head)

TOPORS-AS1 Gene

TOPORS antisense RNA 1

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

DAB1-AS1 Gene

DAB1 antisense RNA 1

TRN-GTT20-1 Gene

transfer RNA-Asn (GTT) 20-1

TRX-CAT2-1 Gene

transfer RNA-iMet (CAT) 2-1

Santos and Zasloff (1981) [PubMed 6261953] identified 12 initiator methionine tRNA genes, symbolized tRNA-i(met), in the haploid human genome. Zasloff et al. (1982) [PubMed 6923137] found a variant tRNA-i(met) with a G-to-T transversion in the highly conserved TCGA sequence in loop 4, a sequence position occupied exclusively by a purine (usually G) in almost 200 prokaryotic and eukaryotic tRNAs. One functional consequence of this base substitution is reduction in the rate of processing of the primary transcript of the gene. A second, demonstrated by microinjection into the germinal vesicle of the intact Xenopus laevis oocyte, is blockage of egress from the nucleus. It has been estimated that the human haploid genome contains 1,000 to 2,000 tRNA genes and that there are 50 to 60 chromatographically distinct tRNA species. These observations suggest redundancy of some tRNA genes. The studies of initiator methionine tRNA genes bear out this suspicion.[supplied by OMIM, Sep 2009]

RNU4-6P Gene

RNA, U4 small nuclear 6, pseudogene

SNORA71D Gene

small nucleolar RNA, H/ACA box 71D

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNY1P4 Gene

RNA, Ro-associated Y1 pseudogene 4

RNY1P5 Gene

RNA, Ro-associated Y1 pseudogene 5

RNY1P6 Gene

RNA, Ro-associated Y1 pseudogene 6

RNY1P7 Gene

RNA, Ro-associated Y1 pseudogene 7

TRUND-NNN10-1 Gene

transfer RNA-undetermined (NNN) 10-1

RNY1P2 Gene

RNA, Ro-associated Y1 pseudogene 2

RNY1P3 Gene

RNA, Ro-associated Y1 pseudogene 3

FAM83H-AS1 Gene

FAM83H antisense RNA 1 (head to head)

RNY1P9 Gene

RNA, Ro-associated Y1 pseudogene 9

RBMY1A1 Gene

RNA binding motif protein, Y-linked, family 1, member A1

This gene encodes a protein containing an RNA-binding motif in the N-terminus and four SRGY (serine, arginine, glycine, tyrosine) boxes in the C-terminus. This protein is thought to function as a splicing regulator during spermatogenesis. Multiple closely related paralogs of this gene are found in a gene cluster in the AZFb azoospermia factor region of chromosome Y. Most of these related copies are thought to be pseudogenes, though several likely encode functional proteins. [provided by RefSeq, Mar 2016]

LOC100303749 Gene

LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene

TMEM212-AS1 Gene

TMEM212 antisense RNA 1

CAPN10-AS1 Gene

CAPN10 antisense RNA 1 (head to head)

RNMTL1P1 Gene

RNA methyltransferase like 1 pseudogene 1

GRM5-AS1 Gene

GRM5 antisense RNA 1

SNAR-A3 Gene

small ILF3/NF90-associated RNA A3

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNAR-A2 Gene

small ILF3/NF90-associated RNA A2

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNAR-A7 Gene

small ILF3/NF90-associated RNA A7

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNAR-A6 Gene

small ILF3/NF90-associated RNA A6

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNAR-A5 Gene

small ILF3/NF90-associated RNA A5

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNAR-A4 Gene

small ILF3/NF90-associated RNA A4

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

RBFOX2 Gene

RNA binding protein, fox-1 homolog (C. elegans) 2

This gene is one of several human genes similar to the C. elegans gene Fox-1. This gene encodes an RNA binding protein that is thought to be a key regulator of alternative exon splicing in the nervous system and other cell types. The protein binds to a conserved UGCAUG element found downstream of many alternatively spliced exons and promotes inclusion of the alternative exon in mature transcripts. The protein also interacts with the estrogen receptor 1 transcription factor and regulates estrogen receptor 1 transcriptional activity. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

TRL-TAG3-1 Gene

transfer RNA-Leu (TAG) 3-1

LINC01235 Gene

long intergenic non-protein coding RNA 1235

TRF-GAA10-1 Gene

transfer RNA-Phe (GAA) 10-1

TM4SF19-AS1 Gene

TM4SF19 antisense RNA 1

SNORA16A Gene

small nucleolar RNA, H/ACA box 16A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNAP25-AS1 Gene

SNAP25 antisense RNA 1

Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. [provided by Alliance of Genome Resources, Mar 2025]

LINC01433 Gene

long intergenic non-protein coding RNA 1433

LINC01432 Gene

long intergenic non-protein coding RNA 1432

LINC01431 Gene

long intergenic non-protein coding RNA 1431

LINC01430 Gene

long intergenic non-protein coding RNA 1430

TRUND-NNN5-1 Gene

transfer RNA-undetermined (NNN) 5-1

WDFY3-AS2 Gene

WDFY3 antisense RNA 2

WDFY3-AS1 Gene

WDFY3 antisense RNA 1

TRA-AGC4-1 Gene

transfer RNA-Ala (AGC) 4-1

KDM4A-AS1 Gene

KDM4A antisense RNA 1

LINC01299 Gene

long intergenic non-protein coding RNA 1299

LINC01293 Gene

long intergenic non-protein coding RNA 1293

LINC01291 Gene

long intergenic non-protein coding RNA 1291

TRG-CCC4-1 Gene

transfer RNA-Gly (CCC) 4-1

GATA6-AS1 Gene

GATA6 antisense RNA 1 (head to head)

SAP30L-AS1 Gene

SAP30L antisense RNA 1 (head to head)

TMEM254-AS1 Gene

TMEM254 antisense RNA 1

RBMY2YP Gene

RNA binding motif protein, Y-linked, family 2, member Y pseudogene

RNU7-49P Gene

RNA, U7 small nuclear 49 pseudogene

RNU5E-1 Gene

RNA, U5E small nuclear 1

Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4/U6 x U5 tri-snRNP complex and U5 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

STRBP Gene

spermatid perinuclear RNA binding protein

Enables RNA binding activity. Predicted to be involved in cell differentiation and spermatogenesis. Predicted to act upstream of or within cell motility; mechanosensory behavior; and spermatid development. Located in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

TRUND-NNN4-1 Gene

transfer RNA-undetermined (NNN) 4-1

SNORD70 Gene

small nucleolar RNA, C/D box 70

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC01165 Gene

long intergenic non-protein coding RNA 1165

RNU1-21P Gene

RNA, U1 small nuclear 21, pseudogene

TRC-GCA5-1 Gene

transfer RNA-Cys (GCA) 5-1

MTOR-AS1 Gene

MTOR antisense RNA 1

FGF10-AS1 Gene

FGF10 antisense RNA 1

TRN-GTT21-1 Gene

transfer RNA-Asn (GTT) 21-1

TRS-GCT4-1 Gene

transfer RNA-Ser (GCT) 4-1

TRS-GCT4-3 Gene

transfer RNA-Ser (GCT) 4-3

TRS-GCT4-2 Gene

transfer RNA-Ser (GCT) 4-2

LOC100422449 Gene

TIA1 cytotoxic granule-associated RNA binding protein-like 1 pseudogene

RBMY2FP Gene

RNA binding motif protein, Y-linked, family 2, member F pseudogene

MAFTRR Gene

MAF transcriptional regulator RNA

RNU7-44P Gene

RNA, U7 small nuclear 44 pseudogene

MYCBP2-AS2 Gene

MYCBP2 antisense RNA 2

MYCBP2-AS1 Gene

MYCBP2 antisense RNA 1

TRN-ATT1-1 Gene

transfer RNA-Asn (ATT) 1-1

THRB-AS1 Gene

THRB antisense RNA 1

LINC00944 Gene

long intergenic non-protein coding RNA 944

LINC00945 Gene

long intergenic non-protein coding RNA 945

LINC00941 Gene

long intergenic non-protein coding RNA 941

Enables promoter-enhancer loop anchoring activity. Involved in chromatin looping and positive regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Mar 2025]

LINC00942 Gene

long intergenic non-protein coding RNA 942

LINC00943 Gene

long intergenic non-protein coding RNA 943

TRL-AAG3-1 Gene

transfer RNA-Leu (AAG) 3-1

SNORD116-5 Gene

small nucleolar RNA, C/D box 116-5

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

HOXC-AS2 Gene

HOXC cluster antisense RNA 2

RBM33 Gene

RNA binding motif protein 33

Enables N6-methyladenosine-containing RNA reader activity and lncRNA binding activity. Involved in RNA export from nucleus and regulation of mRNA stability. Located in cytoplasm. Is active in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

RBM39 Gene

RNA binding motif protein 39

This gene encodes a member of the U2AF65 family of proteins. The encoded protein is found in the nucleus, where it co-localizes with core spliceosomal proteins. It has been shown to play a role in both steroid hormone receptor-mediated transcription and alternative splicing, and it is also a transcriptional coregulator of the viral oncoprotein v-Rel. Multiple transcript variants have been observed for this gene. A related pseudogene has been identified on chromosome X. [provided by RefSeq, Aug 2011]

RBM38 Gene

RNA binding motif protein 38

Enables mRNA 3'-UTR binding activity. Involved in DNA damage response, signal transduction by p53 class mediator; negative regulation of cell population proliferation; and regulation of gene expression. Located in cytosol and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

TRT-TGT4-1 Gene

transfer RNA-Thr (TGT) 4-1

SNORD116-7 Gene

small nucleolar RNA, C/D box 116-7

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP361 Gene

RNA, 5S ribosomal pseudogene 361

OVAAL Gene

ovarian adenocarcinoma amplified long non-coding RNA

Predicted to enable pre-mRNA branch point binding activity. Predicted to be involved in mRNA branch site recognition. Predicted to be part of U2 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNU7-87P Gene

RNA, U7 small nuclear 87 pseudogene

CELF2-AS1 Gene

CELF2 antisense RNA 1

Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Mar 2025]

TRP-AGG3-1 Gene

transfer RNA-Pro (AGG) 3-1

MANEA-AS1 Gene

MANEA antisense RNA 1 (head to head)

RNU7-12P Gene

RNA, U7 small nuclear 12 pseudogene

RNU6ATAC Gene

RNA, U6atac small nuclear (U12-dependent splicing)

Predicted to enable U4atac snRNA binding activity and pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition and spliceosomal tri-snRNP complex assembly. Predicted to be part of U6atac snRNP. [provided by Alliance of Genome Resources, Mar 2025]

TRL-CAA5-1 Gene

transfer RNA-Leu (CAA) 5-1

LOC105369241 Gene

RNA polymerase II transcription factor SIII subunit A3-like

SNORD62B Gene

small nucleolar RNA, C/D box 62B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRA-AGC7-1 Gene

transfer RNA-Ala (AGC) 7-1

TRF-GAA6-1 Gene

transfer RNA-Phe (GAA) 6-1

TRG-CCC6-1 Gene

transfer RNA-Gly (CCC) 6-1

LINC00535 Gene

long intergenic non-protein coding RNA 535

LINC00534 Gene

long intergenic non-protein coding RNA 534

LINC00537 Gene

long intergenic non-protein coding RNA 537

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

LINC00536 Gene

long intergenic non-protein coding RNA 536

LINC00533 Gene

long intergenic non-protein coding RNA 533

LINC00539 Gene

long intergenic non-protein coding RNA 539

LINC00538 Gene

long intergenic non-protein coding RNA 538

RBPMS2 Gene

RNA binding protein with multiple splicing 2

The protein encoded by this gene is a member of the RNA recognition motif (RRM)-containing protein family and is involved in the development and dedifferentiation of digestive smooth muscle cells. The encoded protein functions as a homodimer and indirectly inhibits the bone morphogenetic protein pathway. [provided by RefSeq, Aug 2016]

RALY-AS1 Gene

RALY antisense RNA 1

TMEM9B-AS1 Gene

TMEM9B antisense RNA 1

JAZF1-AS1 Gene

JAZF1 antisense RNA 1

ARHGEF19-AS1 Gene

ARHGEF19 antisense RNA 1

DSCAS Gene

DSC1/DSC2 antisense RNA

RN7SL5P Gene

RNA, 7SL, cytoplasmic 5, pseudogene

RNA5SP259 Gene

RNA, 5S ribosomal pseudogene 259

RNA5SP258 Gene

RNA, 5S ribosomal pseudogene 258

RNA5SP255 Gene

RNA, 5S ribosomal pseudogene 255

RNA5SP257 Gene

RNA, 5S ribosomal pseudogene 257

RNA5SP256 Gene

RNA, 5S ribosomal pseudogene 256

RNA5SP251 Gene

RNA, 5S ribosomal pseudogene 251

TRC-GCA23-1 Gene

transfer RNA-Cys (GCA) 23-1

LAMTOR5-AS1 Gene

LAMTOR5 antisense RNA 1

PHKA2-AS1 Gene

PHKA2 antisense RNA 1

RNMTL1P2 Gene

RNA methyltransferase like 1 pseudogene 2

TRK-CTT12-1 Gene

transfer RNA-Lys (CTT) 12-1

TRW-CCA6-1 Gene

transfer RNA-Trp (CCA) 6-1

PRKRIRP8 Gene

protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 8

PRKRIRP9 Gene

protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 9

PRKRIRP1 Gene

protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 1

PRKRIRP2 Gene

protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 2

PRKRIRP3 Gene

protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 3

PRKRIRP4 Gene

protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 4

PRKRIRP5 Gene

protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 5

PRKRIRP6 Gene

protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 6

PRKRIRP7 Gene

protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 7

SNORA11 Gene

small nucleolar RNA, H/ACA box 11

Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SNORA11, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]

SNORA10 Gene

small nucleolar RNA, H/ACA box 10

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA13 Gene

small nucleolar RNA, H/ACA box 13

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRG-GCC5-1 Gene

transfer RNA-Gly (GCC) 5-1

TAF9P1 Gene

TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 1

TAF9P2 Gene

TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 2

TAF9P3 Gene

TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 3

FTSJ2 Gene

FtsJ RNA methyltransferase homolog 2 (E. coli)

The protein encoded by this gene is a member of the S-adenosylmethionine-binding protein family. It is a nucleolar protein and it may be involved in the processing and modification of rRNA. This gene has been suggested to be involved in cell cycle control and DNA repair. [provided by RefSeq, Jul 2008]

FTSJ1 Gene

FtsJ RNA methyltransferase homolog 1 (E. coli)

This gene encodes a member of the methyltransferase superfamily. The encoded protein localizes to the nucleolus, binds to S-adenosylmethionine, and may be involved in the processing and modification of ribosomal RNA. Mutations in this gene are associated with cognitive disability. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2013]

HOXA-AS3 Gene

HOXA cluster antisense RNA 3

HOXA-AS2 Gene

HOXA cluster antisense RNA 2

This gene produces a long non-coding RNA that promotes cell proliferation. This transcript may interact with enhancer of zeste homolog 2 Polycomb repressive complex to repress gene expression. [provided by RefSeq, Dec 2017]

AZIN1-AS1 Gene

AZIN1 antisense RNA 1

SRP14P1 Gene

signal recognition particle 14kDa (homologous Alu RNA binding protein) pseudogene 1

RNA5SP413 Gene

RNA, 5S ribosomal pseudogene 413

ARMCX3-AS1 Gene

ARMCX3 antisense RNA 1

RNA5SP414 Gene

RNA, 5S ribosomal pseudogene 414

RNA5SP419 Gene

RNA, 5S ribosomal pseudogene 419

LY86-AS1 Gene

LY86 antisense RNA 1

LOC102724822 Gene

carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 pseudogene

RAD21-AS1 Gene

RAD21 antisense RNA 1

LINC01588 Gene

long intergenic non-protein coding RNA 1588

LINC01585 Gene

long intergenic non-protein coding RNA 1585

LINC01583 Gene

long intergenic non-protein coding RNA 1583

LINC01582 Gene

long intergenic non-protein coding RNA 1582

LINC01581 Gene

long intergenic non-protein coding RNA 1581

LINC01580 Gene

long intergenic non-protein coding RNA 1580

TRA-AGC6-1 Gene

transfer RNA-Ala (AGC) 6-1

LINC01055 Gene

long intergenic non-protein coding RNA 1055

LINC01057 Gene

long intergenic non-protein coding RNA 1057

LINC01056 Gene

long intergenic non-protein coding RNA 1056

LINC01050 Gene

long intergenic non-protein coding RNA 1050

LINC01053 Gene

long intergenic non-protein coding RNA 1053

LINC01059 Gene

long intergenic non-protein coding RNA 1059

TRL-CAG2-1 Gene

transfer RNA-Leu (CAG) 2-1

TRL-CAG2-2 Gene

transfer RNA-Leu (CAG) 2-2

EFCAB14-AS1 Gene

EFCAB14 antisense RNA 1

ZRSR1 Gene

zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 1

Predicted to enable pre-mRNA 3'-splice site binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U2AF complex and spliceosomal complex. [provided by Alliance of Genome Resources, Mar 2025]

TRR-ACG2-4 Gene

transfer RNA-Arg (ACG) 2-4

TRR-ACG2-3 Gene

transfer RNA-Arg (ACG) 2-3

TRR-ACG2-2 Gene

transfer RNA-Arg (ACG) 2-2

TRR-ACG2-1 Gene

transfer RNA-Arg (ACG) 2-1

SNORD126 Gene

small nucleolar RNA, C/D box 126

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD125 Gene

small nucleolar RNA, C/D box 125

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

ZC3H18-AS1 Gene

ZC3H18 antisense RNA 1 (head to head)

CASK-AS1 Gene

CASK antisense RNA 1

UBE2E1-AS1 Gene

UBE2E1 antisense RNA 1

TRF-GAA2-1 Gene

transfer RNA-Phe (GAA) 2-1

RNY3 Gene

RNA, Ro-associated Y3

Predicted to act upstream of or within DNA replication initiation and nuclear DNA replication. [provided by Alliance of Genome Resources, Mar 2025]

ZNF205-AS1 Gene

ZNF205 antisense RNA 1

Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. [provided by Alliance of Genome Resources, Mar 2025]

CNTFR-AS1 Gene

CNTFR antisense RNA 1

RBMY1A3P Gene

RNA binding motif protein, Y-linked, family 1, member A3 pseudogene

DLGAP1-AS1 Gene

DLGAP1 antisense RNA 1

TRK-TTT1-1 Gene

transfer RNA-Lys (TTT) 1-1

RNU5B-6P Gene

RNA, U5B small nuclear 6, pseudogene

RNA5SP203 Gene

RNA, 5S ribosomal pseudogene 203

PIRC83 Gene

piwi-interacting RNA cluster 83

KANSL1-AS1 Gene

KANSL1 antisense RNA 1

PIRC81 Gene

piwi-interacting RNA cluster 81

IQCF5-AS1 Gene

IQCF5 antisense RNA 1

PIRC89 Gene

piwi-interacting RNA cluster 89

SNORA73A Gene

small nucleolar RNA, H/ACA box 73A

Predicted to be involved in RNA processing. Located in nucleus. Part of box H/ACA RNP complex. [provided by Alliance of Genome Resources, Mar 2025]

SNORA73B Gene

small nucleolar RNA, H/ACA box 73B

HTR5A-AS1 Gene

HTR5A antisense RNA 1

RNU7-57P Gene

RNA, U7 small nuclear 57 pseudogene

HMMR-AS1 Gene

HMMR antisense RNA 1

LINC01217 Gene

long intergenic non-protein coding RNA 1217

LINC01216 Gene

long intergenic non-protein coding RNA 1216

LINC01210 Gene

long intergenic non-protein coding RNA 1210

LINC01219 Gene

long intergenic non-protein coding RNA 1219

LINC01218 Gene

long intergenic non-protein coding RNA 1218

DCTN1-AS1 Gene

DCTN1 antisense RNA 1

EGFR-AS1 Gene

EGFR antisense RNA 1

C9ORF173-AS1 Gene

C9orf173 antisense RNA 1

TRG-TCC1-1 Gene

transfer RNA-Gly (TCC) 1-1

OCIAD1-AS1 Gene

OCIAD1 antisense RNA 1

RNY5P10 Gene

RNA, Ro-associated Y5 pseudogene 10

ARHGEF7-AS2 Gene

ARHGEF7 antisense RNA 2

RNU6-52P Gene

RNA, U6 small nuclear 52, pseudogene

ARHGEF7-AS1 Gene

ARHGEF7 antisense RNA 1

ADARB2-AS1 Gene

ADARB2 antisense RNA 1

ENTPD3-AS1 Gene

ENTPD3 antisense RNA 1

LINC01213 Gene

long intergenic non-protein coding RNA 1213

TSC22D1-AS1 Gene

TSC22D1 antisense RNA 1

AIRN Gene

antisense of IGF2R non-protein coding RNA

Both spliced and un-spliced long non-coding RNAs are transcribed from this gene. This gene overlaps on the opposite strand the second intron of the insulin-like growth factor 2 receptor gene; a CpG island associated with the second intron denotes an active promoter that drives the expression of this gene. The related mouse gene is responsible for silencing the insulin-like growth factor 2 receptor gene and flanking genes in the imprinted gene cluster of mice. This gene may be expressed in Wilms tumors. [provided by RefSeq, Feb 2013]

RBMY2NP Gene

RNA binding motif protein, Y-linked, family 2, member N pseudogene

SNAP47-AS1 Gene

SNAP47 antisense RNA 1

SNAR-A12 Gene

small ILF3/NF90-associated RNA A12

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

TMEM26-AS1 Gene

TMEM26 antisense RNA 1

FER1L6-AS2 Gene

FER1L6 antisense RNA 2

FER1L6-AS1 Gene

FER1L6 antisense RNA 1

C1QTNF9B-AS1 Gene

C1QTNF9B antisense RNA 1

Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Mar 2025]

DIO2-AS1 Gene

DIO2 antisense RNA 1

RNA5SP26 Gene

RNA, 5S ribosomal pseudogene 26

RNA5SP28 Gene

RNA, 5S ribosomal pseudogene 28

RNU7-88P Gene

RNA, U7 small nuclear 88 pseudogene

TRA-TGC3-1 Gene

transfer RNA-Ala (TGC) 3-1

TRA-TGC3-2 Gene

transfer RNA-Ala (TGC) 3-2

RNA5SP363 Gene

RNA, 5S ribosomal pseudogene 363

RNA5SP362 Gene

RNA, 5S ribosomal pseudogene 362

RNA5SP365 Gene

RNA, 5S ribosomal pseudogene 365

RNA5SP367 Gene

RNA, 5S ribosomal pseudogene 367

RNA5SP366 Gene

RNA, 5S ribosomal pseudogene 366

TRL-TAG2-1 Gene

transfer RNA-Leu (TAG) 2-1

FOXG1-AS1 Gene

FOXG1 antisense RNA 1 (head to head)

TRN-GTT2-6 Gene

transfer RNA-Asn (GTT) 2-6

TRN-GTT2-5 Gene

transfer RNA-Asn (GTT) 2-5

TRN-GTT2-4 Gene

transfer RNA-Asn (GTT) 2-4

TRN-GTT2-3 Gene

transfer RNA-Asn (GTT) 2-3

TRN-GTT2-2 Gene

transfer RNA-Asn (GTT) 2-2

TRN-GTT2-1 Gene

transfer RNA-Asn (GTT) 2-1

The saturation hybridization studies of Hatlen and Attardi (1971) [PubMed 4929578] indicated a copy number of tRNA genes of 1,300 for the haploid human genome--an average of 65 gene copies for each tRNA species. These genes tend to be clustered, an arrangement that would facilitate the exchange of sequence information and enable them to evolve together.[supplied by OMIM, Sep 2009]

RHOXF1-AS1 Gene

RHOXF1 antisense RNA 1

RN7SKP10 Gene

RNA, 7SK small nuclear pseudogene 10

RRP1B Gene

ribosomal RNA processing 1B

Enables transcription coactivator activity. Involved in cellular response to virus; positive regulation of apoptotic process; and positive regulation of transcription by RNA polymerase II. Located in chromosome; granular component; and nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

TXNDC12-AS1 Gene

TXNDC12 antisense RNA 1

BRF2 Gene

BRF2, RNA polymerase III transcription initiation factor 50 kDa subunit

This gene encodes one of the multiple subunits of the RNA polymerase III transcription factor complex required for transcription of genes with promoter elements upstream of the initiation site. The product of this gene, a TFIIB-like factor, is directly recruited to the TATA-box of polymerase III small nuclear RNA gene promoters through its interaction with the TATA-binding protein. [provided by RefSeq, Jul 2008]

BRF1 Gene

BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit

This gene encodes one of the three subunits of the RNA polymerase III transcription factor complex. This complex plays a central role in transcription initiation by RNA polymerase III on genes encoding tRNA, 5S rRNA, and other small structural RNAs. The gene product belongs to the TF2B family. Several alternatively spliced variants encoding different isoforms, that function at different promoters transcribed by RNA polymerase III, have been identified. [provided by RefSeq, Jun 2011]

RRP12 Gene

ribosomal RNA processing 12 homolog (S. cerevisiae)

Enables RNA binding activity. Located in cytosol; nucleolus; and plasma membrane. [provided by Alliance of Genome Resources, Mar 2025]

RRP15 Gene

ribosomal RNA processing 15 homolog (S. cerevisiae)

This gene encodes a protein that co-purifies with human nucleoli. A similar protein in budding yeast is a component of pre-60S ribosomal particles, and is required for the early maturation steps of the 60S subunit. [provided by RefSeq, Jul 2008]

RNF185-AS1 Gene

RNF185 antisense RNA 1

TRE-CTC1-4 Gene

transfer RNA-Glu (CTC) 1-4

TRE-CTC1-6 Gene

transfer RNA-Glu (CTC) 1-6

TFAP2A-AS1 Gene

TFAP2A antisense RNA 1

TRQ-CTG17-1 Gene

transfer RNA-Gln (CTG) 17-1

TRP-AGG2-5 Gene

transfer RNA-Pro (AGG) 2-5

LINC00328-2P Gene

long intergenic non-protein coding RNA 328-2, pseudogene

LINC01298 Gene

long intergenic non-protein coding RNA 1298

ZFPM2-AS1 Gene

ZFPM2 antisense RNA 1

SOCS2-AS1 Gene

SOCS2 antisense RNA 1

LINC01296 Gene

long intergenic non-protein coding RNA 1296

RNU6-58P Gene

RNA, U6 small nuclear 58, pseudogene

RNU5E-9P Gene

RNA, U5E small nuclear 9, pseudogene

SNORD113-1 Gene

small nucleolar RNA, C/D box 113-1

Small nucleolar RNAs (snoRNAs), like SNORD113-1, guide the formation of 2-prime O-methylation of ribosomal RNA (rRNA) and U small nuclear RNAs (snRNAs) through a specific RNA duplex at each modification site. SNORD113-1 is 1 of 9 tandem SNORD113 genes on chromosome 14q32 (Cavaille et al., 2002 [PubMed 12045206]).[supplied by OMIM, Nov 2010]

SNORD113-3 Gene

small nucleolar RNA, C/D box 113-3

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRG-TCC5-1 Gene

transfer RNA-Gly (TCC) 5-1

SNORD115-42 Gene

small nucleolar RNA, C/D box 115-42

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-40 Gene

small nucleolar RNA, C/D box 115-40

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-46 Gene

small nucleolar RNA, C/D box 115-46

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-45 Gene

small nucleolar RNA, C/D box 115-45

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-44 Gene

small nucleolar RNA, C/D box 115-44

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-48 Gene

small nucleolar RNA, C/D box 115-48

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRS-GCT5-1 Gene

transfer RNA-Ser (GCT) 5-1

ANO1-AS2 Gene

ANO1 antisense RNA 2 (head to head)

TRY-GTA12-1 Gene

transfer RNA-Tyr (GTA) 12-1

SNORD42B Gene

small nucleolar RNA, C/D box 42B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD42A Gene

small nucleolar RNA, C/D box 42A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SCEL-AS1 Gene

SCEL antisense RNA 1

MMP24-AS1 Gene

MMP24 antisense RNA 1

DLG5-AS1 Gene

DLG5 antisense RNA 1

RRNAD1 Gene

ribosomal RNA adenine dimethylase domain containing 1

Predicted to enable rRNA (adenine-N6,N6-)-dimethyltransferase activity. Predicted to be involved in rRNA methylation. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

RBM11P1 Gene

RNA binding motif protein 11 pseudogene 1

SNORA46 Gene

small nucleolar RNA, H/ACA box 46

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA47 Gene

small nucleolar RNA, H/ACA box 47

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA44 Gene

small nucleolar RNA, H/ACA box 44

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA43 Gene

small nucleolar RNA, H/ACA box 43

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA40 Gene

small nucleolar RNA, H/ACA box 40

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA41 Gene

small nucleolar RNA, H/ACA box 41

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA48 Gene

small nucleolar RNA, H/ACA box 48

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA49 Gene

small nucleolar RNA, H/ACA box 49

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

FAM13A-AS1 Gene

FAM13A antisense RNA 1

RBMY1C Gene

RNA binding motif protein, Y-linked, family 1, member C

Enables RNA binding activity and identical protein binding activity. Involved in regulation of RNA splicing. Located in nucleus. Part of protein-containing complex. [provided by Alliance of Genome Resources, Mar 2025]

RBMY1B Gene

RNA binding motif protein, Y-linked, family 1, member B

This gene encodes a protein containing an RNA-binding motif in the N-terminus and four SRGY (serine, arginine, glycine, tyrosine) boxes in the C-terminus. This protein likely functions as a splicing factor during spermatogenesis. Multiple closely related paralogs of this gene are found in a gene cluster in the AZFb azoospermia factor region of chromosome Y. Most of these related copies are thought to be pseudogenes, though several likely encode functional proteins. [provided by RefSeq, Mar 2016]

LOC105373280 Gene

RNA-binding protein 33-like

NFIA-AS1 Gene

NFIA antisense RNA 1

RBMY1F Gene

RNA binding motif protein, Y-linked, family 1, member F

This gene encodes a protein containing an RNA-binding motif in the N-terminus and four SRGY (serine, arginine, glycine, tyrosine) boxes in the C-terminus. Multiple copies of this gene are found in the AZFb azoospermia factor region of chromosome Y and the encoded protein is thought to be involved in spermatogenesis. Most copies of this locus are pseudogenes, although six highly similar copies have full-length ORFs and are considered functional. Four functional copies of this gene are found within inverted repeat IR2; two functional copies of this gene are found in palindrome P3, along with two copies of PTPN13-like, Y-linked. [provided by RefSeq, Jul 2008]

RBMY1E Gene

RNA binding motif protein, Y-linked, family 1, member E

This gene encodes a protein containing an RNA-binding motif in the N-terminus and four SRGY (serine, arginine, glycine, tyrosine) boxes in the C-terminus. Multiple copies of this gene are found in the AZFb azoospermia factor region of chromosome Y and the encoded protein is thought to be involved in spermatogenesis. Most copies of this locus are pseudogenes, although six highly similar copies have full-length ORFs and are considered functional. Four functional copies of this gene are found within inverted repeat IR2; two functional copies of this gene are found in palindrome P3, along with two copies of PTPN13-like, Y-linked. [provided by RefSeq, Jul 2008]

RBMY1D Gene

RNA binding motif protein, Y-linked, family 1, member D

This gene encodes a protein containing an RNA-binding motif in the N-terminus and four SRGY (serine, arginine, glycine, tyrosine) boxes in the C-terminus. This protein likely functions as a splicing factor during spermatogenesis. Multiple closely related paralogs of this gene are found in a gene cluster in the AZFb azoospermia factor region of chromosome Y. Most of these related copies are thought to be pseudogenes, though several likely encode functional proteins. [provided by RefSeq, Mar 2016]

TRR-TCG3-1 Gene

transfer RNA-Arg (TCG) 3-1

MSI2 Gene

musashi RNA-binding protein 2

This gene encodes an RNA-binding protein that is a member of the Musashi protein family. The encoded protein is transcriptional regulator that targets genes involved in development and cell cycle regulation. Mutations in this gene are associated with poor prognosis in certain types of cancers. This gene has also been shown to be rearranged in certain cancer cells. [provided by RefSeq, Apr 2016]

MSI1 Gene

musashi RNA-binding protein 1

This gene encodes a protein containing two conserved tandem RNA recognition motifs. Similar proteins in other species function as RNA-binding proteins and play central roles in posttranscriptional gene regulation. Expression of this gene has been correlated with the grade of the malignancy and proliferative activity in gliomas and melanomas. A pseudogene for this gene is located on chromosome 11q13. [provided by RefSeq, Jul 2008]

SNORD114@ Gene

small nucleolar RNA, C/D box 114 cluster

TRN-GTT3-2 Gene

transfer RNA-Asn (GTT) 3-2

TRN-GTT3-1 Gene

transfer RNA-Asn (GTT) 3-1

TRF-GAA11-1 Gene

transfer RNA-Phe (GAA) 11-1

RASSF1-AS1 Gene

RASSF1 antisense RNA 1

TRK-CTT2-4 Gene

transfer RNA-Lys (CTT) 2-4

LINC01507 Gene

long intergenic non-protein coding RNA 1507

LINC01506 Gene

long intergenic non-protein coding RNA 1506

LINC01505 Gene

long intergenic non-protein coding RNA 1505

LINC01503 Gene

long intergenic non-protein coding RNA 1503

LINC01502 Gene

long intergenic non-protein coding RNA 1502

LINC01501 Gene

long intergenic non-protein coding RNA 1501

LINC01500 Gene

long intergenic non-protein coding RNA 1500

LINC01509 Gene

long intergenic non-protein coding RNA 1509

LINC01508 Gene

long intergenic non-protein coding RNA 1508

ARRDC1-AS1 Gene

ARRDC1 antisense RNA 1

This transcribed locus is thought to be non-coding. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2014]

TRF-GAA7-1 Gene

transfer RNA-Phe (GAA) 7-1

KHDRBS2 Gene

KH domain containing, RNA binding, signal transduction associated 2

Predicted to enable mRNA binding activity and poly(A) binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

A1BG-AS1 Gene

A1BG antisense RNA 1

CEBPA-AS1 Gene

CEBPA antisense RNA 1 (head to head)

LINC00368 Gene

long intergenic non-protein coding RNA 368

LINC00365 Gene

long intergenic non-protein coding RNA 365

LINC00366 Gene

long intergenic non-protein coding RNA 366

LINC00367 Gene

long intergenic non-protein coding RNA 367

LINC00362 Gene

long intergenic non-protein coding RNA 362

LINC00363 Gene

long intergenic non-protein coding RNA 363

TRNAE-CUC Gene

transfer RNA glutamic acid (anticodon CUC)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

UBA6-AS1 Gene

UBA6 antisense RNA 1 (head to head)

USP27X-AS1 Gene

USP27X antisense RNA 1 (head to head)

RNA5SP518 Gene

RNA, 5S ribosomal pseudogene 518

RNA5SP517 Gene

RNA, 5S ribosomal pseudogene 517

RNA5SP514 Gene

RNA, 5S ribosomal pseudogene 514

RNA5SP515 Gene

RNA, 5S ribosomal pseudogene 515

RNA5SP512 Gene

RNA, 5S ribosomal pseudogene 512

RNA5SP513 Gene

RNA, 5S ribosomal pseudogene 513

RNA5SP510 Gene

RNA, 5S ribosomal pseudogene 510

SH3BP5-AS1 Gene

SH3BP5 antisense RNA 1

RNU7-73P Gene

RNA, U7 small nuclear 73 pseudogene

LINC01144 Gene

long intergenic non-protein coding RNA 1144

LINC01140 Gene

long intergenic non-protein coding RNA 1140

TRC-GCA22-1 Gene

transfer RNA-Cys (GCA) 22-1

TRD-GTC10-1 Gene

transfer RNA-Asp (GTC) 10-1

REXO1L12P Gene

REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 12, pseudogene

KLHL30-AS1 Gene

KLHL30 antisense RNA 1

TRM-CAT4-1 Gene

transfer RNA-Met (CAT) 4-1

TRM-CAT4-3 Gene

transfer RNA-Met (CAT) 4-3

TRM-CAT4-2 Gene

transfer RNA-Met (CAT) 4-2

RNU6V Gene

RNA, U6 small nuclear variant sequence with SNRPE pseudogene sequence

TRV-CAC3-1 Gene

transfer RNA-Val (CAC) 3-1

TRH-GTG3-1 Gene

transfer RNA-His (GTG) 3-1

KLHL7-AS1 Gene

KLHL7 antisense RNA 1 (head to head)

ITGB2-AS1 Gene

ITGB2 antisense RNA 1

SNORD58A Gene

small nucleolar RNA, C/D box 58A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD58C Gene

small nucleolar RNA, C/D box 58C

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD58B Gene

small nucleolar RNA, C/D box 58B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRG-GCC4-1 Gene

transfer RNA-Gly (GCC) 4-1

RBM5-AS1 Gene

RBM5 antisense RNA 1

This gene produces a non-coding RNA in antisense to the RNA binding motif protein 5 (RBM5) gene. This transcript interacts with beta catenin and may regulate expression of WNT target genes. [provided by RefSeq, Sep 2016]

FRMD6-AS1 Gene

FRMD6 antisense RNA 1

TRV-CAC14-1 Gene

transfer RNA-Val (CAC) 14-1

PIRC68 Gene

piwi-interacting RNA cluster 68

MT-LIPCAR Gene

mitochondrially encoded long non-coding cardiac associated RNA

LINC00167 Gene

long intergenic non-protein coding RNA 167

LINC00162 Gene

long intergenic non-protein coding RNA 162

LINC00163 Gene

long intergenic non-protein coding RNA 163

LINC00161 Gene

long intergenic non-protein coding RNA 161

KCNIP2-AS1 Gene

KCNIP2 antisense RNA 1

IL21R-AS1 Gene

IL21R antisense RNA 1

LINC00836 Gene

long intergenic non-protein coding RNA 836

LINC00837 Gene

long intergenic non-protein coding RNA 837

LINC00838 Gene

long intergenic non-protein coding RNA 838

LINC00839 Gene

long intergenic non-protein coding RNA 839

TRNAI-GAU Gene

transfer RNA isoleucine (anticodon GAU)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

YTHDF3-AS1 Gene

YTHDF3 antisense RNA 1 (head to head)

AQP4-AS1 Gene

AQP4 antisense RNA 1

RBM43P1 Gene

RNA binding motif protein 43 pseudogene 1

SNORD89 Gene

small nucleolar RNA, C/D box 89

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD87 Gene

small nucleolar RNA, C/D box 87

Small nucleolar RNAs (snoRNAs) of the C/D class, such as SNORD87, are involved in 2-prime-methylation of preribosomal RNA precursors (Gogolevskaya et al., 2002 [PubMed 12119114]).[supplied by OMIM, Aug 2008]

SNORD86 Gene

small nucleolar RNA, C/D box 86

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

NPHP3-AS1 Gene

NPHP3 antisense RNA 1

SNORD84 Gene

small nucleolar RNA, C/D box 84

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD82 Gene

small nucleolar RNA, C/D box 82

The majority of small nucleolar RNAs (snoRNAs) function as guide RNAs in the nucleotide modification of preribosomal RNA (pre-rRNA). C/D box snoRNAs, like SNORD82, are involved in site-specific 2-prime-O-ribose methylation of pre-rRNA (Rebane and Metspalu, 1999 [PubMed 10524220]).[supplied by OMIM, Mar 2008]

SNORD81 Gene

small nucleolar RNA, C/D box 81

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD80 Gene

small nucleolar RNA, C/D box 80

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TMEM92-AS1 Gene

TMEM92 antisense RNA 1

MYLK-AS2 Gene

MYLK antisense RNA 2

RNU5E-5P Gene

RNA, U5E small nuclear 5, pseudogene

RBMY2VP Gene

RNA binding motif protein, Y-linked, family 2, member V pseudogene

TRL-CAG3-1 Gene

transfer RNA-Leu (CAG) 3-1

PIRC53 Gene

piwi-interacting RNA cluster 53

TRE-TTC1-1 Gene

transfer RNA-Glu (TTC) 1-1

TRE-TTC1-2 Gene

transfer RNA-Glu (TTC) 1-2

DIO3OS Gene

DIO3 opposite strand/antisense RNA (head to head)

The mouse and human DIO3OS and DIO3 (MIM 601038) genes overlap and are transcribed in opposite directions. The mouse Dio3 gene is imprinted from the paternal allele during fetal development, suggesting that DIO3OS is a noncoding gene that may have a role in maintaining monoallelic expression of DIO3 (Hernandez et al., 2004 [PubMed 14962667]).[supplied by OMIM, Mar 2008]

RNGTTP1 Gene

RNA guanylyltransferase and 5'-phosphatase pseudogene 1

TRF-GAA3-1 Gene

transfer RNA-Phe (GAA) 3-1

NEXN-AS1 Gene

NEXN antisense RNA 1

RNA5SP499 Gene

RNA, 5S ribosomal pseudogene 499

RNA5SP493 Gene

RNA, 5S ribosomal pseudogene 493

RNA5SP492 Gene

RNA, 5S ribosomal pseudogene 492

RNA5SP491 Gene

RNA, 5S ribosomal pseudogene 491

RNA5SP490 Gene

RNA, 5S ribosomal pseudogene 490

RNA5SP497 Gene

RNA, 5S ribosomal pseudogene 497

RNA5SP495 Gene

RNA, 5S ribosomal pseudogene 495

RNA5SP494 Gene

RNA, 5S ribosomal pseudogene 494

TAF1B Gene

TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa

Initiation of transcription by RNA polymerase I requires the formation of a complex composed of the TATA-binding protein (TBP) and three TBP-associated factors (TAFs) specific for RNA polymerase I. This complex, known as SL1, binds to the core promoter of ribosomal RNA genes to position the polymerase properly and acts as a channel for regulatory signals. This gene encodes one of the SL1-specific TAFs. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2016]

RBMS3-AS3 Gene

RBMS3 antisense RNA 3

RBMS3-AS2 Gene

RBMS3 antisense RNA 2

TAF1D Gene

TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa

TAF1D is a member of the SL1 complex, which includes TBP (MIM 600075) and TAF1A (MIM 604903), TAF1B (MIM 604904), and TAF1C (MIM 604905), and plays a role in RNA polymerase I transcription (Wang et al., 2004 [PubMed 15520167]; Gorski et al., 2007 [PubMed 17318177]).[supplied by OMIM, Jun 2009]

RNU1-17P Gene

RNA, U1 small nuclear 17, pseudogene

RNU2-2P Gene

RNA, U2 small nuclear 2, pseudogene

RNU5F-2P Gene

RNA, U5F small nuclear 2, pseudogene

FRMPD4-AS1 Gene

FRMPD4 antisense RNA 1

TRK-CTT15-1 Gene

transfer RNA-Lys (CTT) 15-1

MRPL23-AS1 Gene

MRPL23 antisense RNA 1

LINC01158 Gene

long intergenic non-protein coding RNA 1158

Predicted to act upstream of or within regulation of gene expression. [provided by Alliance of Genome Resources, Mar 2025]

LINC01159 Gene

long intergenic non-protein coding RNA 1159

Predicted to act upstream of or within cerebellar cortex structural organization; homeostasis of number of cells within a tissue; and regulation of gene expression. Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

LINC01150 Gene

long intergenic non-protein coding RNA 1150

LINC01152 Gene

long intergenic non-protein coding RNA 1152

LINC01153 Gene

long intergenic non-protein coding RNA 1153

TRP-CGG1-1 Gene

transfer RNA-Pro (CGG) 1-1

TRP-CGG1-2 Gene

transfer RNA-Pro (CGG) 1-2

TRP-CGG1-3 Gene

transfer RNA-Pro (CGG) 1-3

TRNASTOP-UCA Gene

transfer RNA opal suppressor (anticodon UCA)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TRN-GTT9-1 Gene

transfer RNA-Asn (GTT) 9-1

RNU7-74P Gene

RNA, U7 small nuclear 74 pseudogene

LINC00283 Gene

long intergenic non-protein coding RNA 283

LINC00282 Gene

long intergenic non-protein coding RNA 282

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

LINC00280 Gene

long intergenic non-protein coding RNA 280

LINC00284 Gene

long intergenic non-protein coding RNA 284

LRRC2-AS1 Gene

LRRC2 antisense RNA 1

TRA-AGC17-1 Gene

transfer RNA-Ala (AGC) 17-1

TRSUP-CTA3-1 Gene

transfer RNA suppressor (CTA) 3-1

UNC5B-AS1 Gene

UNC5B antisense RNA 1

SRGAP2-AS1 Gene

SRGAP2 antisense RNA 1

LOC644584 Gene

EWS RNA-binding protein 1 pseudogene

RNU6-50P Gene

RNA, U6 small nuclear 50, pseudogene

TRA-AGC5-1 Gene

transfer RNA-Ala (AGC) 5-1

RPPH1 Gene

ribonuclease P RNA component H1

H1RNA is the RNA component of the RNase P ribonucleoprotein, an endoribonuclease that cleaves tRNA precursor molecules to form the mature 5-prime termini of their tRNA sequences (Baer et al., 1989 [PubMed 2308839]).[supplied by OMIM, Mar 2008]

ITPKB-AS1 Gene

ITPKB antisense RNA 1

MAPKAPK5-AS1 Gene

MAPKAPK5 antisense RNA 1

CCDC13-AS1 Gene

CCDC13 antisense RNA 1

HCFC1-AS1 Gene

HCFC1 antisense RNA 1

HEXA-AS1 Gene

HEXA antisense RNA 1

TRG-AS1 Gene

T cell receptor gamma locus antisense RNA 1

RNA5SP288 Gene

RNA, 5S ribosomal pseudogene 288

RNA5SP282 Gene

RNA, 5S ribosomal pseudogene 282

RNA5SP283 Gene

RNA, 5S ribosomal pseudogene 283

RNA5SP280 Gene

RNA, 5S ribosomal pseudogene 280

RNA5SP281 Gene

RNA, 5S ribosomal pseudogene 281

RNA5SP286 Gene

RNA, 5S ribosomal pseudogene 286

RNA5SP287 Gene

RNA, 5S ribosomal pseudogene 287

RNA5SP284 Gene

RNA, 5S ribosomal pseudogene 284

RNA5SP285 Gene

RNA, 5S ribosomal pseudogene 285

RNA5SP131 Gene

RNA, 5S ribosomal pseudogene 131

RNA5SP132 Gene

RNA, 5S ribosomal pseudogene 132

RNA5SP133 Gene

RNA, 5S ribosomal pseudogene 133

RNA5SP135 Gene

RNA, 5S ribosomal pseudogene 135

RNA5SP138 Gene

RNA, 5S ribosomal pseudogene 138

RNA5SP139 Gene

RNA, 5S ribosomal pseudogene 139

TRW-CCA3-3 Gene

transfer RNA-Trp (CCA) 3-3

TRW-CCA3-2 Gene

transfer RNA-Trp (CCA) 3-2

DPH6-AS1 Gene

DPH6 antisense RNA 1 (head to head)

NPPA-AS1 Gene

NPPA antisense RNA 1

Predicted to enable mRNA binding activity. Predicted to be involved in regulation of gene expression. [provided by Alliance of Genome Resources, Mar 2025]

POLR3GL Gene

polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like

Predicted to enable chromatin binding activity. Involved in transcription by RNA polymerase III. Located in nucleus. Part of RNA polymerase III complex. [provided by Alliance of Genome Resources, Mar 2025]

ADPGK-AS1 Gene

ADPGK antisense RNA 1

POT1-AS1 Gene

POT1 antisense RNA 1

TRNAC-GCA Gene

transfer RNA cysteine (anticodon GCA)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

ELL2P2 Gene

elongation factor, RNA polymerase II, 2 pseudogene 2

LINC00678 Gene

long intergenic non-protein coding RNA 678

LOC268276 Gene

musashi RNA-binding protein 1 pseudogene

LINC00676 Gene

long intergenic non-protein coding RNA 676

LINC00677 Gene

long intergenic non-protein coding RNA 677

LINC00675 Gene

long intergenic non-protein coding RNA 675

Involved in intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress. Located in endoplasmic reticulum membrane. [provided by Alliance of Genome Resources, Mar 2025]

LINC00672 Gene

long intergenic non-protein coding RNA 672

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

LINC00673 Gene

long intergenic non-protein coding RNA 673

This gene produces a long non-protein coding RNA that is involved in the regulation of gene expression during tumor progression. This transcript can promote cell proliferation in gastric cancer through interaction with enhancer of zeste 2 and other epigenetic suppressors of gene expression, thereby downregulating target genes including Kruppel like factors 2 and 4. This transcript may also act as a tumor suppressor by promoting interaction between protein tyrosine phosphatase, non-receptor type 11 (Ptpn11) and ubiquitin ligase, resulting in degradation of Ptpn11 and lowered oncogenic signalling. Naturally-occurring variation at this locus results in the formation of a binding site for miR-1231, which negatively regulates activity of this transcript. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2017]

LINC00670 Gene

long intergenic non-protein coding RNA 670

LINC00671 Gene

long intergenic non-protein coding RNA 671

ERMARD Gene

ER membrane-associated RNA degradation

The protein encoded by this gene contains 2 transmembrane domains near the C-terminus and is localized in the endoplasmic reticulum. Knockout of this gene in developing rat brain showed that it may be involved in neuronal migration. Mutations in this gene are associated with periventricular nodular heterotopia-6 (PVNH6). Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Dec 2013]

LINC00092 Gene

long intergenic non-protein coding RNA 92

TRNAP-CGG Gene

transfer RNA proline (anticodon CGG)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

STARD13-AS Gene

STARD13 antisense RNA

REXO1L2P Gene

REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2, pseudogene

GSN-AS1 Gene

GSN antisense RNA 1

TRW-CCA1-1 Gene

transfer RNA-Trp (CCA) 1-1

TRD-GTC5-1 Gene

transfer RNA-Asp (GTC) 5-1

HLTF-AS1 Gene

HLTF antisense RNA 1

TRQ-CTG16-1 Gene

transfer RNA-Gln (CTG) 16-1

SNORD115-36 Gene

small nucleolar RNA, C/D box 115-36

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRM-CAT1-1 Gene

transfer RNA-Met (CAT) 1-1

SNORD115-37 Gene

small nucleolar RNA, C/D box 115-37

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-33 Gene

small nucleolar RNA, C/D box 115-33

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-30 Gene

small nucleolar RNA, C/D box 115-30

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-31 Gene

small nucleolar RNA, C/D box 115-31

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRSUP-CTA2-1 Gene

transfer RNA suppressor (CTA) 2-1

LINC01276 Gene

long intergenic non-protein coding RNA 1276

NKILA Gene

NF-kappaB interacting long non-coding RNA

LINC00863 Gene

long intergenic non-protein coding RNA 863

LINC00861 Gene

long intergenic non-protein coding RNA 861

LOC101929851 Gene

RNA polymerase II transcription factor SIII subunit A3-like

LINC00865 Gene

long intergenic non-protein coding RNA 865

LINC00864 Gene

long intergenic non-protein coding RNA 864

TRA-AGC12-3 Gene

transfer RNA-Ala (AGC) 12-3

GAS6-AS1 Gene

GAS6 antisense RNA 1

GAS6-AS2 Gene

GAS6 antisense RNA 2 (head to head)

PNKY Gene

long intergenic non-protein coding RNA PNKY

BTBD9-AS1 Gene

BTBD9 antisense RNA 1

RNU5E-2P Gene

RNA, U5E small nuclear 2, pseudogene

DNMBP-AS1 Gene

DNMBP antisense RNA 1

TRS-AGA5-1 Gene

transfer RNA-Ser (AGA) 5-1

RPUSD1 Gene

RNA pseudouridylate synthase domain containing 1

Predicted to enable pseudouridine synthase activity. Predicted to be involved in enzyme-directed rRNA pseudouridine synthesis. [provided by Alliance of Genome Resources, Mar 2025]

RPUSD2 Gene

RNA pseudouridylate synthase domain containing 2

Enables pseudouridine synthase activity. Involved in mRNA pseudouridine synthesis. [provided by Alliance of Genome Resources, Mar 2025]

RPUSD3 Gene

RNA pseudouridylate synthase domain containing 3

This gene encodes a protein that functions in the assembly of the mitochondrial ribosome by adding a pseudouridine group to 16S rRNA. Loss of this gene results in causes defects in mitochondrial protein production. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2017]

CTDP1 Gene

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1

This gene encodes a protein which interacts with the carboxy-terminus of the RAP74 subunit of transcription initiation factor TFIIF, and functions as a phosphatase that processively dephosphorylates the C-terminus of POLR2A (a subunit of RNA polymerase II), making it available for initiation of gene expression. Mutations in this gene are associated with congenital cataracts, facial dysmorphism and neuropathy syndrome (CCFDN). Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Feb 2011]

VTRNA2-1 Gene

vault RNA 2-1

This gene produces an RNA polymerase III transcript that resembles both a component of the ribonucleoprotein vault particle and a pre-microRNA. However, the RNA product does not function as a vault or microRNA; rather, it acts as a direct inhibitor of protein kinase R (also known as eukaryotic translation initiation factor 2-alpha kinase 2, EIF2AK2), and thereby plays an important role in the regulation of cell growth. This gene is located in the vicinity of a differentially methylated region (DMR) and is imprinted and may show allele-specific expression. This gene is also often hypermethylated and repressed in cancers. [provided by RefSeq, Nov 2015]

SNORD50A Gene

small nucleolar RNA, C/D box 50A

SNORD50A belongs to the C/D box class of small nucleolar RNAs (snoRNAs), which are thought to function as guide RNAs in the site-specific ribose methylation of preribosomal RNA (Kiss-Laszlo et al., 1996 [PubMed 8674114]).[supplied by OMIM, Nov 2009]

TRV-TAC3-1 Gene

transfer RNA-Val (TAC) 3-1

SNORD50B Gene

small nucleolar RNA, C/D box 50B

SNORD50B is a C/D box-type small nucleolar RNA (snoRNA) that is predicted to function as a guide RNA in 2-prime O-methylation of 28S ribosomal RNA (Tanaka et al., 2000 [PubMed 10792466]).[supplied by OMIM, Feb 2010]

GAPLINC Gene

gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA

TRK-TTT10-1 Gene

transfer RNA-Lys (TTT) 10-1

SSBP3-AS1 Gene

SSBP3 antisense RNA 1

Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Mar 2025]

TPRG1-AS1 Gene

TPRG1 antisense RNA 1

TPRG1-AS2 Gene

TPRG1 antisense RNA 2

NUCB1-AS1 Gene

NUCB1 antisense RNA 1

SNORA16B Gene

small nucleolar RNA, H/ACA box 16B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC01460 Gene

long intergenic non-protein coding RNA 1460

LINC01461 Gene

long intergenic non-protein coding RNA 1461

LEMD1-AS1 Gene

LEMD1 antisense RNA 1

LINC01465 Gene

long intergenic non-protein coding RNA 1465

LINC01467 Gene

long intergenic non-protein coding RNA 1467

TRT-CGT5-1 Gene

transfer RNA-Thr (CGT) 5-1

MORF4L2-AS1 Gene

MORF4L2 antisense RNA 1

RNA5SP208 Gene

RNA, 5S ribosomal pseudogene 208

CELF2-AS2 Gene

CELF2 antisense RNA 2

LINC00924 Gene

long intergenic non-protein coding RNA 924

RNU6-82P Gene

RNA, U6 small nuclear 82, pseudogene

LARS2-AS1 Gene

LARS2 antisense RNA 1

LINC00485 Gene

long intergenic non-protein coding RNA 485

TRA-AGC22-1 Gene

transfer RNA-Ala (AGC) 22-1

CHKB-AS1 Gene

CHKB antisense RNA 1 (head to head)

TRP-AGG2-1 Gene

transfer RNA-Pro (AGG) 2-1

TRP-AGG2-2 Gene

transfer RNA-Pro (AGG) 2-2

TRP-AGG2-4 Gene

transfer RNA-Pro (AGG) 2-4

RNA5SP412 Gene

RNA, 5S ribosomal pseudogene 412

RNA5SP411 Gene

RNA, 5S ribosomal pseudogene 411

RNA5SP410 Gene

RNA, 5S ribosomal pseudogene 410

RNA5SP417 Gene

RNA, 5S ribosomal pseudogene 417

TRP-AGG2-7 Gene

transfer RNA-Pro (AGG) 2-7

POLR2LP Gene

polymerase (RNA) II (DNA directed) polypeptide L pseudogene

KCNJ2-AS1 Gene

KCNJ2 antisense RNA 1 (head to head)

MGAT3-AS1 Gene

MGAT3 antisense RNA 1

LUNAR1 Gene

leukemia-associated non-coding IGF1R activator RNA 1

This gene is thought to produce a functional long non-coding RNA. It is regulated by Notch and is overexpressed in T cell acute lymphoblastic leukemia. The transcript acts as a positive regulator of cell division by promoting expression of the insulin-like growth factor type I receptor (IGF1R) gene. [provided by RefSeq, Feb 2015]

RNU1-24P Gene

RNA, U1 small nuclear 24, pseudogene

TRM-CAT5-1 Gene

transfer RNA-Met (CAT) 5-1

TRK-TTT3-5 Gene

transfer RNA-Lys (TTT) 3-5

MEIS1-AS3 Gene

MEIS1 antisense RNA 3

MORC2-AS1 Gene

MORC2 antisense RNA 1

TRH-GTG2-1 Gene

transfer RNA-His (GTG) 2-1

MEIS1-AS2 Gene

MEIS1 antisense RNA 2

VAV3-AS1 Gene

VAV3 antisense RNA 1

PPP3CB-AS1 Gene

PPP3CB antisense RNA 1 (head to head)

RNU7-43P Gene

RNA, U7 small nuclear 43 pseudogene

GABPB1-AS1 Gene

GABPB1 antisense RNA 1

TRC-GCA16-1 Gene

transfer RNA-Cys (GCA) 16-1

CDR1-AS Gene

CDR1 antisense RNA

This gene represents naturally-occurring RNAs transcribed in antisense to CDR1 (cerebellar degeneration-related protein 1, 34kDa; GeneID:1038), some of which may be circular rather than linear. The circular RNA produced by this locus acts as an miRNA sponge, preventing the miRNA from interacting with target transcripts. No RefSeq transcript is created for the circular RNA. [provided by RefSeq, Feb 2024]

SNORA11E Gene

small nucleolar RNA, H/ACA box 11E

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC00208 Gene

long intergenic non-protein coding RNA 208

LINC01450 Gene

long intergenic non-protein coding RNA 1450

IRAIN Gene

IGF1R antisense imprinted non-protein coding RNA

This gene expresses a long non-coding RNA in antisense to the insulin-like growth factor type I receptor (IGF1R) gene. This transcript is imprinted and expressed from the paternal allele. It interacts with chromatin and may promote long-range DNA interactions that influence the regulation of gene expression. [provided by RefSeq, Nov 2015]

TRS-CGA4-1 Gene

transfer RNA-Ser (CGA) 4-1

TRA-TGC6-1 Gene

transfer RNA-Ala (TGC) 6-1

LINC00974 Gene

long intergenic non-protein coding RNA 974

LINC00977 Gene

long intergenic non-protein coding RNA 977

LINC00971 Gene

long intergenic non-protein coding RNA 971

LINC00970 Gene

long intergenic non-protein coding RNA 970

LINC00973 Gene

long intergenic non-protein coding RNA 973

LINC00972 Gene

long intergenic non-protein coding RNA 972

NRSN2-AS1 Gene

NRSN2 antisense RNA 1

ZBED3-AS1 Gene

ZBED3 antisense RNA 1

PARD3-AS1 Gene

PARD3 antisense RNA 1

RNA5SP445 Gene

RNA, 5S ribosomal pseudogene 445

SLIT1-AS1 Gene

SLIT1 antisense RNA 1

RNPC3 Gene

RNA-binding region (RNP1, RRM) containing 3

Two types of spliceosomes catalyze splicing of pre-mRNAs. The major U2-type spliceosome is found in all eukaryotes and removes U2-type introns, which represent more than 99% of pre-mRNA introns. The minor U12-type spliceosome is found in some eukaryotes and removes U12-type introns, which are rare and have distinct splice consensus signals. The U12-type spliceosome consists of several small nuclear RNAs and associated proteins. This gene encodes a 65K protein that is a component of the U12-type spliceosome. This protein contains two RNA recognition motifs (RRMs), suggesting that it may contact one of the small nuclear RNAs of the minor spliceosome. [provided by RefSeq, Jul 2008]

FAM83A-AS1 Gene

FAM83A antisense RNA 1

ZBTB11-AS1 Gene

ZBTB11 antisense RNA 1

SORCS3-AS1 Gene

SORCS3 antisense RNA 1

ZMYND10-AS1 Gene

ZMYND10 antisense RNA 1

TRG-CCC3-1 Gene

transfer RNA-Gly (CCC) 3-1

LOC100420215 Gene

RNA binding motif protein 45 pseudogene

PRMT5-AS1 Gene

PRMT5 antisense RNA 1

PIRC54 Gene

piwi-interacting RNA cluster 54

GRIK1-AS2 Gene

GRIK1 antisense RNA 2

GRIK1-AS1 Gene

GRIK1 antisense RNA 1

WDR86-AS1 Gene

WDR86 antisense RNA 1

PIRC59 Gene

piwi-interacting RNA cluster 59

PIRC58 Gene

piwi-interacting RNA cluster 58

LINC00562 Gene

long intergenic non-protein coding RNA 562

LINC00563 Gene

long intergenic non-protein coding RNA 563

LINC00560 Gene

long intergenic non-protein coding RNA 560

LINC00561 Gene

long intergenic non-protein coding RNA 561

LINC00566 Gene

long intergenic non-protein coding RNA 566

LINC00567 Gene

long intergenic non-protein coding RNA 567

LINC00564 Gene

long intergenic non-protein coding RNA 564

LINC00565 Gene

long intergenic non-protein coding RNA 565

ZNF561-AS1 Gene

ZNF561 antisense RNA 1 (head to head)

LOC100422106 Gene

staufen double-stranded RNA binding protein 1 pseudogene

RN7SL6P Gene

RNA, 7SL, cytoplasmic 6, pseudogene

LINC00471 Gene

long intergenic non-protein coding RNA 471

TRH-GTG1-3 Gene

transfer RNA-His (GTG) 1-3

RNA5SP202 Gene

RNA, 5S ribosomal pseudogene 202

TRT-CGT6-1 Gene

transfer RNA-Thr (CGT) 6-1

RNA18S5 Gene

RNA, 18S ribosomal 5

45S ribosomal DNA (rDNA) arrays, or clusters, are present on human chromosomes 13, 14, 15, 21 and 22, designated RNR1 through RNR5, respectively. Each cluster consists of multiple 45S rDNA repeat units that vary in number among individuals and chromosomes, with total diploid copy number estimates ranging from 60 to >800 repeat units in a human genome. The 45S rDNA repeat unit encodes a 45S rRNA precursor, transcribed by RNA polymerase I, which is processed to form the 18S, 5.8S and 28S rRNAs. This gene is a representative copy of the 18S ribosomal RNA whose chromosomal location is unknown. [provided by RefSeq, Mar 2017]

RNA5SP200 Gene

RNA, 5S ribosomal pseudogene 200

RNA5SP201 Gene

RNA, 5S ribosomal pseudogene 201

RNA5SP204 Gene

RNA, 5S ribosomal pseudogene 204

RNA5SP205 Gene

RNA, 5S ribosomal pseudogene 205

RNA5SP209 Gene

RNA, 5S ribosomal pseudogene 209

CERS6-AS1 Gene

CERS6 antisense RNA 1

RBM7 Gene

RNA binding motif protein 7

Enables 14-3-3 protein binding activity; pre-mRNA intronic binding activity; and snRNA binding activity. Involved in snRNA catabolic process. Located in nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

RBM6 Gene

RNA binding motif protein 6

Enables RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

RBM5 Gene

RNA binding motif protein 5

This gene is a candidate tumor suppressor gene which encodes a nuclear RNA binding protein that is a component of the spliceosome A complex. The encoded protein plays a role in the induction of cell cycle arrest and apoptosis through pre-mRNA splicing of multiple target genes including the tumor suppressor protein p53. This gene is located within the tumor suppressor region 3p21.3, and may play a role in the inhibition of tumor transformation and progression of several malignancies including lung cancer. [provided by RefSeq, Oct 2011]

RBM4 Gene

RNA binding motif protein 4

Enables RNA binding activity and cyclin binding activity. Involved in several processes, including IRES-dependent translational initiation of linear mRNA; negative regulation of translation; and regulation of alternative mRNA splicing, via spliceosome. Located in cytoplasmic stress granule; cytosol; and nuclear lumen. [provided by Alliance of Genome Resources, Mar 2025]

RBM3 Gene

RNA binding motif (RNP1, RRM) protein 3

This gene is a member of the glycine-rich RNA-binding protein family and encodes a protein with one RNA recognition motif (RRM) domain. Expression of this gene is induced by cold shock and low oxygen tension. A pseudogene exists on chromosome 1. Multiple alternatively spliced transcript variants that are predicted to encode different isoforms have been characterized although some of these variants fit nonsense-mediated decay (NMD) criteria. [provided by RefSeq, Jul 2008]

RNA5SP207 Gene

RNA, 5S ribosomal pseudogene 207

TRE-TTC10-1 Gene

transfer RNA-Glu (TTC) 10-1

ST20-AS1 Gene

ST20 antisense RNA 1

RBMX Gene

RNA binding motif protein, X-linked

This gene belongs to the RBMY gene family which includes candidate Y chromosome spermatogenesis genes. This gene, an active X chromosome homolog of the Y chromosome RBMY gene, is widely expressed whereas the RBMY gene evolved a male-specific function in spermatogenesis. Pseudogenes of this gene, found on chromosomes 1, 4, 9, 11, and 6, were likely derived by retrotransposition from the original gene. Alternatively spliced transcript variants encoding different isoforms have been identified. A snoRNA gene (SNORD61) is found in one of its introns. [provided by RefSeq, Sep 2009]

SMIM2-AS1 Gene

SMIM2 antisense RNA 1

NEURL1-AS1 Gene

NEURL1 antisense RNA 1

ENOX1-AS2 Gene

ENOX1 antisense RNA 2

ENOX1-AS1 Gene

ENOX1 antisense RNA 1

THUMPD3-AS1 Gene

THUMPD3 antisense RNA 1

PIRC51 Gene

piwi-interacting RNA cluster 51

PIRC50 Gene

piwi-interacting RNA cluster 50

PIRC52 Gene

piwi-interacting RNA cluster 52

PIRC55 Gene

piwi-interacting RNA cluster 55

PIRC57 Gene

piwi-interacting RNA cluster 57

PIRC56 Gene

piwi-interacting RNA cluster 56

RNA5SP356 Gene

RNA, 5S ribosomal pseudogene 356

LINC01362 Gene

long intergenic non-protein coding RNA 1362

LINC01361 Gene

long intergenic non-protein coding RNA 1361

LINC01366 Gene

long intergenic non-protein coding RNA 1366

LINC01364 Gene

long intergenic non-protein coding RNA 1364

TRL-TAA3-1 Gene

transfer RNA-Leu (TAA) 3-1

RNU7-66P Gene

RNA, U7 small nuclear 66 pseudogene

TRL-AAG7-1 Gene

transfer RNA-Leu (AAG) 7-1

TRNAD-GUC Gene

transfer RNA aspartic acid (anticodon GUC)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

UBE2R2-AS1 Gene

UBE2R2 antisense RNA 1

TRC-GCA12-1 Gene

transfer RNA-Cys (GCA) 12-1

MLIP-AS1 Gene

MLIP antisense RNA 1

RNA5SP168 Gene

RNA, 5S ribosomal pseudogene 168

FBXO22-AS1 Gene

FBXO22 antisense RNA 1

TRAM2-AS1 Gene

TRAM2 antisense RNA 1 (head to head)

GLIDR Gene

glioblastoma down-regulated RNA

TRC-GCA6-1 Gene

transfer RNA-Cys (GCA) 6-1

TGFB2-AS1 Gene

TGFB2 antisense RNA 1 (head to head)

TRI-AAT11-1 Gene

transfer RNA-Ile (AAT) 11-1

RNU6-19P Gene

RNA, U6 small nuclear 19, pseudogene

TRR-CCT9-1 Gene

transfer RNA-Arg (CCT) 9-1

LINC01002 Gene

long intergenic non-protein coding RNA 1002

LINC01000 Gene

long intergenic non-protein coding RNA 1000

TRG-CCC2-1 Gene

transfer RNA-Gly (CCC) 2-1

LINC01006 Gene

long intergenic non-protein coding RNA 1006

Predicted to be located in cytoplasm and membrane. [provided by Alliance of Genome Resources, Mar 2025]

LINC01007 Gene

long intergenic non-protein coding RNA 1007

LINC01004 Gene

long intergenic non-protein coding RNA 1004

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

SNORA69 Gene

small nucleolar RNA, H/ACA box 69

This gene encodes a member of the family of box ACA small nucleolar RNAs, characterized by a consensus ACA motif positioned 3 nucleotides from the 3' end of the RNAs and a double-hairpin structure. The box ACA small nucleolar RNAs may play a role in rRNA maturation. This gene is co-transcribed with the ribosomal protein L39 gene. [provided by RefSeq, Oct 2009]

TRN-GTT13-1 Gene

transfer RNA-Asn (GTT) 13-1

RNU4-3P Gene

RNA, U4 small nuclear 3, pseudogene

TRNAL-CAG Gene

transfer RNA leucine (anticodon CAG)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TRNAL-CAA Gene

transfer RNA leucine (anticodon CAA)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TRHDE-AS1 Gene

TRHDE antisense RNA 1

DSCAM-AS1 Gene

DSCAM antisense RNA 1

MID1IP1-AS1 Gene

MID1IP1 antisense RNA 1

MESTIT1 Gene

MEST intronic transcript 1, antisense RNA

This gene encodes a non-protein coding antisense RNA that is imprinted, and preferentially expressed from the paternal allele. It is located in an intron of MEST gene in the opposite orientation, and shares the promoter region in common with one of the promoters (P2) of MEST gene. The antisense RNA is expressed predominantly in testis and mature motile spermatozoa, suggesting that it may be involved in the regulation of MEST expression during development.[provided by RefSeq, Oct 2010]

IGSF11-AS1 Gene

IGSF11 antisense RNA 1

LOC100288093 Gene

nuclear RNA export factor 3 pseudogene

TRG-CCC7-1 Gene

transfer RNA-Gly (CCC) 7-1

TEX36-AS1 Gene

TEX36 antisense RNA 1

RNU6-16P Gene

RNA, U6 small nuclear 16, pseudogene

TRQ-TTG7-1 Gene

transfer RNA-Gln (TTG) 7-1

TRW-CCA2-1 Gene

transfer RNA-Trp (CCA) 2-1

CKMT2-AS1 Gene

CKMT2 antisense RNA 1

RBPMSLP Gene

RNA binding protein with multiple splicing-like pseudogene

TRK-TTT4-1 Gene

transfer RNA-Lys (TTT) 4-1

TRR-CCG2-1 Gene

transfer RNA-Arg (CCG) 2-1

LINC01212 Gene

long intergenic non-protein coding RNA 1212

NUTM2B-AS1 Gene

NUTM2B antisense RNA 1

SNORA70B Gene

small nucleolar RNA, H/ACA box 70B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA70D Gene

small nucleolar RNA, H/ACA box 70D

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA70E Gene

small nucleolar RNA, H/ACA box 70E

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA70F Gene

small nucleolar RNA, H/ACA box 70F

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA70G Gene

small nucleolar RNA, H/ACA box 70G

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

C3ORF67-AS1 Gene

C3orf67 antisense RNA 1

TRR-CCT8-1 Gene

transfer RNA-Arg (CCT) 8-1

PCCA-AS1 Gene

PCCA antisense RNA 1

HHATL-AS1 Gene

HHATL antisense RNA 1

ERICH1-AS1 Gene

ERICH1 antisense RNA 1

LOC654338 Gene

brain cytoplasmic RNA 1 (non-protein coding) pseudogene

RNU7-9P Gene

RNA, U7 small nuclear 9 pseudogene

MBNL1-AS1 Gene

MBNL1 antisense RNA 1

CALML3-AS1 Gene

CALML3 antisense RNA 1

A2M-AS1 Gene

A2M antisense RNA 1 (head to head)

RBMY2CP Gene

RNA binding motif protein, Y-linked, family 2, member C pseudogene

CRYM-AS1 Gene

CRYM antisense RNA 1

Predicted to act upstream of or within hematopoietic progenitor cell differentiation. [provided by Alliance of Genome Resources, Mar 2025]

HELLPAR Gene

HELLP associated long non-coding RNA

LINC01523 Gene

long intergenic non-protein coding RNA 1523

LINC01522 Gene

long intergenic non-protein coding RNA 1522

LINC01526 Gene

long intergenic non-protein coding RNA 1526

TRE-CTC17-1 Gene

transfer RNA-Glu (CTC) 17-1

TRT-AGT3-1 Gene

transfer RNA-Thr (AGT) 3-1

TRA-CGC4-1 Gene

transfer RNA-Ala (CGC) 4-1

LINC01208 Gene

long intergenic non-protein coding RNA 1208

RNA5SP18 Gene

RNA, 5S ribosomal pseudogene 18

RNA5SP19 Gene

RNA, 5S ribosomal pseudogene 19

STAU1 Gene

staufen double-stranded RNA binding protein 1

Staufen is a member of the family of double-stranded RNA (dsRNA)-binding proteins involved in the transport and/or localization of mRNAs to different subcellular compartments and/or organelles. These proteins are characterized by the presence of multiple dsRNA-binding domains which are required to bind RNAs having double-stranded secondary structures. The human homologue of staufen encoded by STAU, in addition contains a microtubule- binding domain similar to that of microtubule-associated protein 1B, and binds tubulin. The STAU gene product has been shown to be present in the cytoplasm in association with the rough endoplasmic reticulum (RER), implicating this protein in the transport of mRNA via the microtubule network to the RER, the site of translation. [provided by RefSeq, Apr 2020]

MYO16-AS1 Gene

MYO16 antisense RNA 1

TRQ-TTG6-1 Gene

transfer RNA-Gln (TTG) 6-1

CFLAR-AS1 Gene

CFLAR antisense RNA 1

ANKRD34C-AS1 Gene

ANKRD34C antisense RNA 1

RNU7-82P Gene

RNA, U7 small nuclear 82 pseudogene

TRK-TTT5-1 Gene

transfer RNA-Lys (TTT) 5-1

LINC00202-1 Gene

long intergenic non-protein coding RNA 202-1

LINC00202-2 Gene

long intergenic non-protein coding RNA 202-2

TRT-CGT4-1 Gene

transfer RNA-Thr (CGT) 4-1

NOL6 Gene

nucleolar protein 6 (RNA-associated)

The nucleolus is a dense subnuclear membraneless organelle that assembles around clusters of rRNA genes and functions in ribosome biogenesis. This gene encodes a nucleolar RNA-associated protein that is highly conserved between species. RNase treatment of permeabilized cells indicates that the nucleolar localization is RNA dependent. Further studies suggest that the protein is associated with ribosome biogenesis through an interaction with pre-rRNA primary transcripts. Alternative splicing has been observed at this locus and two splice variants encoding distinct isoforms have been identified. [provided by RefSeq, Jul 2008]

RNU7-17P Gene

RNA, U7 small nuclear 17 pseudogene

RNA5SP347 Gene

RNA, 5S ribosomal pseudogene 347

RNA5SP340 Gene

RNA, 5S ribosomal pseudogene 340

LINC00690 Gene

long intergenic non-protein coding RNA 690

SRD5A3-AS1 Gene

SRD5A3 antisense RNA 1

LINC00694 Gene

long intergenic non-protein coding RNA 694

RNU105B Gene

RNA, U105B small nucleolar

Predicted to be involved in RNA processing. Predicted to act upstream of or within response to bacterium. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRNAG-UCC Gene

transfer RNA glycine (anticodon UCC)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

DDC-AS1 Gene

DDC antisense RNA 1

LOC401703 Gene

U2 small nuclear RNA auxiliary factor 1-like 4 pseudogene

JHDM1D-AS1 Gene

JHDM1D antisense RNA 1 (head to head)

LOC101930171 Gene

RNA polymerase II transcription factor SIII subunit A3-like

EMC3-AS1 Gene

EMC3 antisense RNA 1

ZNRD1-AS1 Gene

ZNRD1 antisense RNA 1

LINC00349 Gene

long intergenic non-protein coding RNA 349

RNU6-6P Gene

RNA, U6 small nuclear 6, pseudogene

Predicted to be located in nuclear speck. [provided by Alliance of Genome Resources, Mar 2025]

SMG7-AS1 Gene

SMG7 antisense RNA 1

HOTAIR Gene

HOX transcript antisense RNA

This gene is located within the Homeobox C (HOXC) gene cluster on chromosome 12 and is co-expressed with the HOXC genes. It functions through an RNA product, which binds lysine specific demethylase 1 (LSD1) and Polycomb repressive complex 2 (PRC2), and serves as a scaffold to assemble these regulators at the HOXD gene cluster, thereby promoting epigenetic repression of HOXD. This gene is highly expressed in multiple tumors. Alternatively spliced transcript variants have been identified. [provided by RefSeq, Feb 2019]

STPG2-AS1 Gene

STPG2 antisense RNA 1

TRL-AAG8-1 Gene

transfer RNA-Leu (AAG) 8-1

RNVU1-20 Gene

RNA, variant U1 small nuclear 20

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

TEX26-AS1 Gene

TEX26 antisense RNA 1

SALRNA3 Gene

senescence associated long non-coding RNA 3

RNU4-1 Gene

RNA, U4 small nuclear 1

Predicted to enable U6 snRNA binding activity. Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4 snRNP and U4/U6 x U5 tri-snRNP complex. [provided by Alliance of Genome Resources, Mar 2025]

PIRC8 Gene

piwi-interacting RNA cluster 8

RNU7-37P Gene

RNA, U7 small nuclear 37 pseudogene

TRNAQ-CUG Gene

transfer RNA glutamine (anticodon CUG)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TAT-AS1 Gene

TAT antisense RNA 1

TRA-TGC7-1 Gene

transfer RNA-Ala (TGC) 7-1

SNORA7B Gene

small nucleolar RNA, H/ACA box 7B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA7A Gene

small nucleolar RNA, H/ACA box 7A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA79 Gene

small nucleolar RNA, H/ACA box 79

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA78 Gene

small nucleolar RNA, H/ACA box 78

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA77 Gene

small nucleolar RNA, H/ACA box 77

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA75 Gene

small nucleolar RNA, H/ACA box 75

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA72 Gene

small nucleolar RNA, H/ACA box 72

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA70 Gene

small nucleolar RNA, H/ACA box 70

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC01001 Gene

long intergenic non-protein coding RNA 1001

DCUN1D2-AS Gene

DCUN1D2 antisense RNA

TRK-CTT7-1 Gene

transfer RNA-Lys (CTT) 7-1

CACNA1C-AS2 Gene

CACNA1C antisense RNA 2

TRR-TCT2-1 Gene

transfer RNA-Arg (TCT) 2-1

Transfer RNA arginine-1 has an anticodon UCU (Morrison et al., 1991 [PubMed 2066114]).[supplied by OMIM, Sep 2009]

RNA5SP369 Gene

RNA, 5S ribosomal pseudogene 369

TRT-AGT5-1 Gene

transfer RNA-Thr (AGT) 5-1

RBMX2P4 Gene

RNA binding motif protein, X-linked 2 pseudogene 4

RBMX2P5 Gene

RNA binding motif protein, X-linked 2 pseudogene 5

RBMX2P1 Gene

RNA binding motif protein, X-linked 2 pseudogene 1

RBMX2P2 Gene

RNA binding motif protein, X-linked 2 pseudogene 2

RBMX2P3 Gene

RNA binding motif protein, X-linked 2 pseudogene 3

GYG2-AS1 Gene

GYG2 antisense RNA 1

MTUS2-AS1 Gene

MTUS2 antisense RNA 1

LINC01082 Gene

long intergenic non-protein coding RNA 1082

LINC01080 Gene

long intergenic non-protein coding RNA 1080

LINC01081 Gene

long intergenic non-protein coding RNA 1081

LINC01087 Gene

long intergenic non-protein coding RNA 1087

LINC01085 Gene

long intergenic non-protein coding RNA 1085

LINC01089 Gene

long intergenic non-protein coding RNA 1089

GAS8-AS1 Gene

GAS8 antisense RNA 1

This gene encodes a long non-coding RNA (lncRNA) that may function as a tumor suppressor. Mutations in this gene have been identified in human papillary thyroid carcinoma (PTC) patients that abrogate the ability of encoded lncRNA to inhibit cancer cell growth. [provided by RefSeq, May 2017]

RNA5SP360 Gene

RNA, 5S ribosomal pseudogene 360

LINC00689 Gene

long intergenic non-protein coding RNA 689

Implicated in colorectal cancer. [provided by Alliance of Genome Resources, Mar 2025]

LINC00687 Gene

long intergenic non-protein coding RNA 687

LINC00686 Gene

long intergenic non-protein coding RNA 686

LINC00685 Gene

long intergenic non-protein coding RNA 685

LINC00684 Gene

long intergenic non-protein coding RNA 684

LINC00682 Gene

long intergenic non-protein coding RNA 682

LINC00681 Gene

long intergenic non-protein coding RNA 681

LINC00355 Gene

long intergenic non-protein coding RNA 355

LINC00354 Gene

long intergenic non-protein coding RNA 354

LINC00351 Gene

long intergenic non-protein coding RNA 351

LINC00350 Gene

long intergenic non-protein coding RNA 350

LINC00353 Gene

long intergenic non-protein coding RNA 353

LINC00352 Gene

long intergenic non-protein coding RNA 352

LINC00359 Gene

long intergenic non-protein coding RNA 359

LINC00358 Gene

long intergenic non-protein coding RNA 358

TRQ-CTG13-1 Gene

transfer RNA-Gln (CTG) 13-1

RNA45S5 Gene

RNA, 45S pre-ribosomal 5

45S ribosomal DNA (rDNA) arrays, or clusters, are present on human chromosomes 13, 14, 15, 21 and 22, designated RNR1 through RNR5, respectively. Each cluster consists of multiple 45S rDNA repeat units that vary in number among individuals and chromosomes, with total diploid copy number estimates ranging from 60 to >800 repeat units in a human genome. The 45S rDNA repeat unit encodes a 45S rRNA precursor, transcribed by RNA polymerase I, which is processed to form the 18S, 5.8S and 28S rRNAs. This gene is a representative copy of the 45S pre-ribosomal RNA whose chromosomal location is unknown. [provided by RefSeq, Mar 2017]

ST8SIA6-AS1 Gene

ST8SIA6 antisense RNA 1

XXYLT1-AS2 Gene

XXYLT1 antisense RNA 2

TLR8-AS1 Gene

TLR8 antisense RNA 1

PRC1-AS1 Gene

PRC1 antisense RNA 1

CCDC183-AS1 Gene

CCDC183 antisense RNA 1

LINC00272 Gene

long intergenic non-protein coding RNA 272

LINC00273 Gene

long intergenic non-protein coding RNA 273

LINC00271 Gene

long intergenic non-protein coding RNA 271

LINC00276 Gene

long intergenic non-protein coding RNA 276

VPS13A-AS1 Gene

VPS13A antisense RNA 1

SNORD49B Gene

small nucleolar RNA, C/D box 49B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

ZNF582-AS1 Gene

ZNF582 antisense RNA 1 (head to head)

TRV-CAC6-1 Gene

transfer RNA-Val (CAC) 6-1

SNORD116-30 Gene

small nucleolar RNA, C/D box 116-30

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

UGDH-AS1 Gene

UGDH antisense RNA 1

TRQ-CTG11-1 Gene

transfer RNA-Gln (CTG) 11-1

CCDC37-AS1 Gene

CCDC37 antisense RNA 1 (head to head)

BARX1-AS1 Gene

BARX1 antisense RNA 1 (head to head)

SALRNA1 Gene

senescence associated long non-coding RNA 1

LINC01246 Gene

long intergenic non-protein coding RNA 1246

TRNAG-GCC Gene

transfer RNA glycine (anticodon GCC)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

LINC01241 Gene

long intergenic non-protein coding RNA 1241

LINC01248 Gene

long intergenic non-protein coding RNA 1248

LINC01249 Gene

long intergenic non-protein coding RNA 1249

TINCR Gene

tissue differentiation-inducing non-protein coding RNA

This gene produces a spliced long non-coding RNA that binds RNAs. This transcript interacts with staufen-1 protein to regulate the stability of mRNAs for genes involved in the differentiation of epidermal tissue. Variation in this gene may be associated with cancer progression. [provided by RefSeq, Aug 2017]

MEOX2-AS1 Gene

MEOX2 antisense RNA 1 (head to head)

RNU7-18P Gene

RNA, U7 small nuclear 18 pseudogene

LINC00599 Gene

long intergenic non-protein coding RNA 599

Predicted to act upstream of or within several processes, including long-term synaptic potentiation; miRNA-mediated post-transcriptional gene silencing; and sensory perception of sound. [provided by Alliance of Genome Resources, Mar 2025]

LINC00598 Gene

long intergenic non-protein coding RNA 598

LINC00116 Gene

long intergenic non-protein coding RNA 116

Involved in several processes, including positive regulation of mitochondrial membrane potential; positive regulation of sequestering of calcium ion; and triglyceride homeostasis. Located in mitochondrion. [provided by Alliance of Genome Resources, Mar 2025]

LINC00115 Gene

long intergenic non-protein coding RNA 115

LINC00114 Gene

long intergenic non-protein coding RNA 114

LINC00113 Gene

long intergenic non-protein coding RNA 113

LINC00112 Gene

long intergenic non-protein coding RNA 112

LINC00111 Gene

long intergenic non-protein coding RNA 111

RNU86 Gene

RNA, U86 small nucleolar

Intronic regions of ribosomal protein genes can harbor noncoding small nucleolar RNAs (snoRNAs), like U86, which are generated during pre-mRNA processing. snoRNAs form part of the small nucleolar ribonucleoprotein particles (snoRNPs) involved in pre-rRNA processing and modification. snoRNAs of the box C/D class, like U86, function in 2-prime-O-ribose methylation of rRNAs (Duga et al., 2000 [PubMed 10684968]).[supplied by OMIM, Mar 2008]

DUSP11 Gene

dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)

The protein encoded by this gene is a member of the dual specificity protein phosphatase subfamily. These phosphatases inactivate their target kinases by dephosphorylating both the phosphoserine/threonine and phosphotyrosine residues. They negatively regulate members of the mitogen-activated protein (MAP) kinase superfamily (MAPK/ERK, SAPK/JNK, p38), which is associated with cellular proliferation and differentiation. Different members of the family of dual specificity phosphatases show distinct substrate specificities for various MAP kinases, different tissue distribution and subcellular localization, and different modes of inducibility of their expression by extracellular stimuli. This gene product is localized to the nucleus and binds directly to RNA and splicing factors, and thus it is suggested to participate in nuclear mRNA metabolism. [provided by RefSeq, Sep 2008]

SACS-AS1 Gene

SACS antisense RNA 1

SBF2-AS1 Gene

SBF2 antisense RNA 1

HORMAD2-AS1 Gene

HORMAD2 antisense RNA 1

SNORD51 Gene

small nucleolar RNA, C/D box 51

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD52 Gene

small nucleolar RNA, C/D box 52

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD53 Gene

small nucleolar RNA, C/D box 53

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD54 Gene

small nucleolar RNA, C/D box 54

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD55 Gene

small nucleolar RNA, C/D box 55

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD57 Gene

small nucleolar RNA, C/D box 57

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

DENND5B-AS1 Gene

DENND5B antisense RNA 1

TRA-AGC13-2 Gene

transfer RNA-Ala (AGC) 13-2

TRI-AAT10-1 Gene

transfer RNA-Ile (AAT) 10-1

RMDN2-AS1 Gene

RMDN2 antisense RNA 1

TOLLIP-AS1 Gene

TOLLIP antisense RNA 1 (head to head)

TRN-GTT12-1 Gene

transfer RNA-Asn (GTT) 12-1

KCNAB1-AS2 Gene

KCNAB1 antisense RNA 2

LINC00996 Gene

long intergenic non-protein coding RNA 996

RNY4P23 Gene

RNA, Ro-associated Y4 pseudogene 23

RBMY2KP Gene

RNA binding motif protein, Y-linked, family 2, member K pseudogene

RNY4P26 Gene

RNA, Ro-associated Y4 pseudogene 26

RNY4P28 Gene

RNA, Ro-associated Y4 pseudogene 28

PIRC95 Gene

piwi-interacting RNA cluster 95

RNA5SP90 Gene

RNA, 5S ribosomal pseudogene 90

RNA5SP91 Gene

RNA, 5S ribosomal pseudogene 91

RNA5SP92 Gene

RNA, 5S ribosomal pseudogene 92

RNA5SP93 Gene

RNA, 5S ribosomal pseudogene 93

RNA5SP94 Gene

RNA, 5S ribosomal pseudogene 94

RNA5SP95 Gene

RNA, 5S ribosomal pseudogene 95

RNA5SP96 Gene

RNA, 5S ribosomal pseudogene 96

RNA5SP97 Gene

RNA, 5S ribosomal pseudogene 97

RNA5SP98 Gene

RNA, 5S ribosomal pseudogene 98

PTPRJ-AS1 Gene

PTPRJ antisense RNA 1

SNORD116-24 Gene

small nucleolar RNA, C/D box 116-24

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

THOC7-AS1 Gene

THOC7 antisense RNA 1

SNORD116-26 Gene

small nucleolar RNA, C/D box 116-26

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-22 Gene

small nucleolar RNA, C/D box 116-22

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-23 Gene

small nucleolar RNA, C/D box 116-23

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP332 Gene

RNA, 5S ribosomal pseudogene 332

RNA5SP330 Gene

RNA, 5S ribosomal pseudogene 330

RNA5SP331 Gene

RNA, 5S ribosomal pseudogene 331

RNU1-14P Gene

RNA, U1 small nuclear 14, pseudogene

SNORD116-28 Gene

small nucleolar RNA, C/D box 116-28

TMEM5-AS1 Gene

TMEM5 antisense RNA 1

HHIP-AS1 Gene

HHIP antisense RNA 1

SMARCA5-AS1 Gene

SMARCA5 antisense RNA 1

TRQ-CTG10-1 Gene

transfer RNA-Gln (CTG) 10-1

FGF14-AS1 Gene

FGF14 antisense RNA 1

FGF14-AS2 Gene

FGF14 antisense RNA 2

TRV-CAC7-1 Gene

transfer RNA-Val (CAC) 7-1

TRK-CTT10-1 Gene

transfer RNA-Lys (CTT) 10-1

HULC Gene

hepatocellular carcinoma up-regulated long non-coding RNA

This gene produces a long RNA that was discovered as upregulated in hepatocellular carcinoma and is associated with cancer progression. Expression of this transcript is regulated by microRNAs and at the transcriptional level by Sp1 family factors. The transcript may regulate gene expression by functioning as a competing RNA for microRNAs. [provided by RefSeq, Dec 2017]

RNU6ATAC2P Gene

RNA, U6atac small nuclear 2, pseudogene

RNPS1 Gene

RNA binding protein S1, serine-rich domain

This gene encodes a protein that is part of a post-splicing multiprotein complex involved in both mRNA nuclear export and mRNA surveillance. mRNA surveillance detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD). When translation ends upstream from the last exon-exon junction, this triggers NMD to degrade mRNAs containing premature stop codons. This protein binds to the mRNA and remains bound after nuclear export, acting as a nucleocytoplasmic shuttling protein. This protein contains many serine residues. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2013]

RNU5F-5P Gene

RNA, U5F small nuclear 5, pseudogene

PWARSN Gene

Prader Willi/Angelman region RNA, SNRPN neighbor

This gene encodes a novel transcript, and is located in the Prader-Willi syndrome critical region on chromosome 15. This gene is expressed exclusively from the paternal allele. [provided by RefSeq, Mar 2017]

TRI-AAT2-1 Gene

transfer RNA-Ile (AAT) 2-1

DICER1-AS1 Gene

DICER1 antisense RNA 1

HTT-AS Gene

HTT antisense RNA (head to head)

Predicted to be involved in regulation of gene expression. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA9L Gene

small Cajal body-specific RNA 9-like

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRV-CAC2-1 Gene

transfer RNA-Val (CAC) 2-1

SLIRP Gene

SRA stem-loop interacting RNA binding protein

Steroid receptor RNA activator (SRA, or SRA1; MIM 603819) is a complex RNA molecule containing multiple stable stem-loop structures that functions in coactivation of nuclear receptors. SLIRP interacts with stem-loop structure-7 of SRA (STR7) and modulates nuclear receptor transactivation (Hatchell et al., 2006 [PubMed 16762838]).[supplied by OMIM, Mar 2008]

LINC01160 Gene

long intergenic non-protein coding RNA 1160

LINC01163 Gene

long intergenic non-protein coding RNA 1163

TRS-AGA6-1 Gene

transfer RNA-Ser (AGA) 6-1

LINC01164 Gene

long intergenic non-protein coding RNA 1164

LINC01167 Gene

long intergenic non-protein coding RNA 1167

LINC01169 Gene

long intergenic non-protein coding RNA 1169

LINC01168 Gene

long intergenic non-protein coding RNA 1168

RNU7-71P Gene

RNA, U7 small nuclear 71 pseudogene

PIRC93 Gene

piwi-interacting RNA cluster 93

DLEU1-AS1 Gene

DLEU1 antisense RNA 1

FEZF1-AS1 Gene

FEZF1 antisense RNA 1

PIRC92 Gene

piwi-interacting RNA cluster 92

PIRC69 Gene

piwi-interacting RNA cluster 69

BICC1 Gene

BicC family RNA binding protein 1

This gene encodes an RNA-binding protein that is active in regulating gene expression by modulating protein translation during embryonic development. Mouse studies identified the corresponding protein to be under strict control during cell differentiation and to be a maternally provided gene product. [provided by RefSeq, Apr 2009]

PCDH9-AS4 Gene

PCDH9 antisense RNA 4

PCDH9-AS2 Gene

PCDH9 antisense RNA 2

TMEM161B-AS1 Gene

TMEM161B antisense RNA 1

PCDH9-AS1 Gene

PCDH9 antisense RNA 1

PIRC66 Gene

piwi-interacting RNA cluster 66

SNORA36B Gene

small nucleolar RNA, H/ACA box 36B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA36C Gene

small nucleolar RNA, H/ACA box 36C

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

CATIP-AS1 Gene

CATIP antisense RNA 1

CATIP-AS2 Gene

CATIP antisense RNA 2

PIRC67 Gene

piwi-interacting RNA cluster 67

PIRC60 Gene

piwi-interacting RNA cluster 60

LOC643494 Gene

RNA binding motif protein 4B pseudogene

PIRC61 Gene

piwi-interacting RNA cluster 61

TERC Gene

telomerase RNA component

Telomerase is a ribonucleoprotein polymerase that maintains telomere ends by addition of the telomere repeat TTAGGG. The enzyme consists of a protein component with reverse transcriptase activity, and an RNA component, encoded by this gene, that serves as a template for the telomere repeat. Telomerase expression plays a role in cellular senescence, as it is normally repressed in postnatal somatic cells resulting in progressive shortening of telomeres. Deregulation of telomerase expression in somatic cells may be involved in oncogenesis. Studies in mouse suggest that telomerase also participates in chromosomal repair, since de novo synthesis of telomere repeats may occur at double-stranded breaks. Mutations in this gene cause autosomal dominant dyskeratosis congenita, and may also be associated with some cases of aplastic anemia. [provided by RefSeq, Jul 2008]

TRNAP-UGG Gene

transfer RNA proline (anticodon UGG)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

RNVU1-3 Gene

RNA, variant U1 small nuclear 3

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

WASF3-AS1 Gene

WASF3 antisense RNA 1

PIRC63 Gene

piwi-interacting RNA cluster 63

LOC105369255 Gene

RNA polymerase II transcription factor SIII subunit A3-like

RNU6-68P Gene

RNA, U6 small nuclear 68, pseudogene

RNU6-57P Gene

RNA, U6 small nuclear 57, pseudogene

TRE-TTC5-1 Gene

transfer RNA-Glu (TTC) 5-1

SNORD115-18 Gene

small nucleolar RNA, C/D box 115-18

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-19 Gene

small nucleolar RNA, C/D box 115-19

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-15 Gene

small nucleolar RNA, C/D box 115-15

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-11 Gene

small nucleolar RNA, C/D box 115-11

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-12 Gene

small nucleolar RNA, C/D box 115-12

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-13 Gene

small nucleolar RNA, C/D box 115-13

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SRP14 Gene

signal recognition particle 14kDa (homologous Alu RNA binding protein)

Enables RNA binding activity. Involved in protein targeting to ER. Located in nucleus. Part of signal recognition particle, endoplasmic reticulum targeting. [provided by Alliance of Genome Resources, Mar 2025]

TRN-GTT4-1 Gene

transfer RNA-Asn (GTT) 4-1

GLIS2-AS1 Gene

GLIS2 antisense RNA 1

SNORD114-14 Gene

small nucleolar RNA, C/D box 114-14

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

CSMD2-AS1 Gene

CSMD2 antisense RNA 1

LIMD1-AS1 Gene

LIMD1 antisense RNA 1

TRE-CTC16-1 Gene

transfer RNA-Glu (CTC) 16-1

TRT-AGT2-2 Gene

transfer RNA-Thr (AGT) 2-2

IL21-AS1 Gene

IL21 antisense RNA 1

RNA5SP105 Gene

RNA, 5S ribosomal pseudogene 105

RNA5SP104 Gene

RNA, 5S ribosomal pseudogene 104

RNA5SP107 Gene

RNA, 5S ribosomal pseudogene 107

TRK-CTT11-1 Gene

transfer RNA-Lys (CTT) 11-1

GNAS-AS1 Gene

GNAS antisense RNA 1

This gene produces a paternally-imprinted antisense RNA transcript that helps regulate the GNAS complex locus, which encodes the alpha subunit of the stimulatory G protein. Defects in this gene are a cause of pseudohypoparathyroidism type Ib.[provided by RefSeq, Jun 2010]

ELL2P3 Gene

elongation factor, RNA polymerase II, 2 pseudogene 3

ENO1-AS1 Gene

ENO1 antisense RNA 1

KTN1-AS1 Gene

KTN1 antisense RNA 1

QKI Gene

QKI, KH domain containing, RNA binding

The protein encoded by this gene is an RNA-binding protein that regulates pre-mRNA splicing, export of mRNAs from the nucleus, protein translation, and mRNA stability. The encoded protein is involved in myelinization and oligodendrocyte differentiation and may play a role in schizophrenia. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2014]

LINC01554 Gene

long intergenic non-protein coding RNA 1554

LINC01555 Gene

long intergenic non-protein coding RNA 1555

LINC01556 Gene

long intergenic non-protein coding RNA 1556

LINC01553 Gene

long intergenic non-protein coding RNA 1553

LINC01558 Gene

long intergenic non-protein coding RNA 1558

LINC01559 Gene

long intergenic non-protein coding RNA 1559

SNORD73B Gene

small nucleolar RNA, C/D box U73B (pseudogene)

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD73A Gene

small nucleolar RNA, C/D box 73A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC00607 Gene

long intergenic non-protein coding RNA 607

LINC00606 Gene

long intergenic non-protein coding RNA 606

LINC00605 Gene

long intergenic non-protein coding RNA 605

LINC00602 Gene

long intergenic non-protein coding RNA 602

LINC00601 Gene

long intergenic non-protein coding RNA 601

LINC00609 Gene

long intergenic non-protein coding RNA 609

LINC00608 Gene

long intergenic non-protein coding RNA 608

PRKCQ-AS1 Gene

PRKCQ antisense RNA 1

FTCD-AS1 Gene

FTCD antisense RNA 1

ANKRD33B-AS1 Gene

ANKRD33B antisense RNA 1

SNAR-I Gene

small ILF3/NF90-associated RNA I

LSM7 Gene

LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Sm-like proteins were identified in a variety of organisms based on sequence homology with the Sm protein family (see SNRPD2; MIM 601061). Sm-like proteins contain the Sm sequence motif, which consists of 2 regions separated by a linker of variable length that folds as a loop. The Sm-like proteins are thought to form a stable heteromer present in tri-snRNP particles, which are important for pre-mRNA splicing.[supplied by OMIM, Apr 2004]

LSM1 Gene

LSM1, U6 small nuclear RNA associated

This gene encodes a member of the LSm family of RNA-binding proteins. LSm proteins form stable heteromers that bind specifically to the 3'-terminal oligo(U) tract of U6 snRNA and may play a role in pre-mRNA splicing by mediating U4/U6 snRNP formation. Increased expression of this gene may play a role in cellular transformation and the progression of several malignancies including lung cancer, mesothelioma and breast cancer. Alternatively spliced transcript variants have been observed for this gene, and a pseudogene of this gene is located on the short arm of chromosome 9. [provided by RefSeq, Nov 2011]

LSM2 Gene

LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)

This gene encodes a member of the LSm family of RNA-binding proteins. LSm proteins form stable heteromers that bind specifically to the 3'-terminal oligo(U) tract of U6 snRNA and may play a role in pre-mRNA splicing by mediating U4/U6 snRNP formation. Pseudogenes of this gene are located on the short arm of chromosomes 6 and 19. [provided by RefSeq, Nov 2011]

ELMO1-AS1 Gene

ELMO1 antisense RNA 1

TRNAS-UGA Gene

transfer RNA serine (anticodon UGA)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

RNA5SP449 Gene

RNA, 5S ribosomal pseudogene 449

TRNAT-AGU Gene

transfer RNA threonine (anticodon AGU)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TAF9BP2 Gene

TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa pseudogene 2

TAF9BP1 Gene

TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa pseudogene 1

LINC00106 Gene

long intergenic non-protein coding RNA 106

RPAP3 Gene

RNA polymerase II associated protein 3

This gene encodes an RNA polymerase II-associated protein. The encoded protein may function in transcriptional regulation and may also regulate apoptosis. Alternatively spliced transcript variants have been described. [provided by RefSeq, Mar 2009]

RPAP1 Gene

RNA polymerase II associated protein 1

This protein forms part of the RNA polymerase II (RNAPII) enzyme complex and may recruit RNAPII to chromatin through its interaction with acetylated histones. [provided by RefSeq, Jul 2012]

RNU6-72P Gene

RNA, U6 small nuclear 72, pseudogene

TRV-TAC4-1 Gene

transfer RNA-Val (TAC) 4-1

RALYL Gene

RALY RNA binding protein-like

Enables identical protein binding activity. Located in nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP119 Gene

RNA, 5S ribosomal pseudogene 119

RNU5E-7P Gene

RNA, U5E small nuclear 7, pseudogene

RNU12 Gene

RNA, U12 small nuclear

Predicted to enable pre-mRNA branch point binding activity. Predicted to be involved in negative regulation of neuron apoptotic process. Predicted to act upstream of or within RNA splicing. Predicted to be part of U12 snRNP. Implicated in autosomal recessive spinocerebellar ataxia 33. [provided by Alliance of Genome Resources, Mar 2025]

RNU11 Gene

RNA, U11 small nuclear

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to act upstream of or within RNA splicing. Predicted to be part of U11 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

DAOA-AS1 Gene

DAOA antisense RNA 1

ACTA2-AS1 Gene

ACTA2 antisense RNA 1

TRL-TAA2-1 Gene

transfer RNA-Leu (TAA) 2-1

RNU4-8P Gene

RNA, U4 small nuclear 8, pseudogene

IFT74-AS1 Gene

IFT74 antisense RNA 1

C1QTNF9-AS1 Gene

C1QTNF9 antisense RNA 1

RBMY1KP Gene

RNA binding motif protein, Y-linked, family 1, member K, pseudogene

TRNAL-UAA Gene

transfer RNA leucine (anticodon UAA)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

RNU7-58P Gene

RNA, U7 small nuclear 58 pseudogene

RNF217-AS1 Gene

RNF217 antisense RNA 1 (head to head)

RNU5A-7P Gene

RNA, U5A small nuclear 7, pseudogene

GPR1-AS Gene

GPR1 antisense RNA

This gene is thought to produce a non-coding RNA. It is situated adjacent to a differentially methylated region (DMR) and is imprinted and paternally expressed in the placenta. [provided by RefSeq, Nov 2015]

RNU7-23P Gene

RNA, U7 small nuclear 23 pseudogene

TRY-GTA6-1 Gene

transfer RNA-Tyr (GTA) 6-1

ZNF790-AS1 Gene

ZNF790 antisense RNA 1

SH3PXD2A-AS1 Gene

SH3PXD2A antisense RNA 1

TRI-AAT9-1 Gene

transfer RNA-Ile (AAT) 9-1

LINC00881 Gene

long intergenic non-protein coding RNA 881

LINC00880 Gene

long intergenic non-protein coding RNA 880

LINC00883 Gene

long intergenic non-protein coding RNA 883

Predicted to act upstream of or within several processes, including generation of neurons; negative regulation of macromolecule biosynthetic process; and protein stabilization. Predicted to be active in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

LINC00882 Gene

long intergenic non-protein coding RNA 882

LINC00885 Gene

long intergenic non-protein coding RNA 885

Implicated in cervical cancer. Biomarker of cervical cancer. [provided by Alliance of Genome Resources, Mar 2025]

LINC00884 Gene

long intergenic non-protein coding RNA 884

LINC00887 Gene

long intergenic non-protein coding RNA 887

LINC00886 Gene

long intergenic non-protein coding RNA 886

LINC00889 Gene

long intergenic non-protein coding RNA 889

SNAI3-AS1 Gene

SNAI3 antisense RNA 1

TRK-CTT6-1 Gene

transfer RNA-Lys (CTT) 6-1

TRT-AGT6-1 Gene

transfer RNA-Thr (AGT) 6-1

SNORD109A Gene

small nucleolar RNA, C/D box 109A

This gene encodes a C/D box-type small nucleolar RNA that is expressed predominantly in the brain. Expression of this RNA is not detectable in the brains of patients with Prader-Willi syndrome. [provided by RefSeq, Jun 2010]

SNORD109B Gene

small nucleolar RNA, C/D box 109B

This gene encodes a C/D box-type small nucleolar RNA that is expressed predominantly in the brain. Expression of this RNA is not detectable in the brains of patients with Prader-Willi syndrome. [provided by RefSeq, Jun 2010]

FGF12-AS2 Gene

FGF12 antisense RNA 2

FGF12-AS3 Gene

FGF12 antisense RNA 3

TRR-TCT3-1 Gene

transfer RNA-Arg (TCT) 3-1

TRR-TCT3-2 Gene

transfer RNA-Arg (TCT) 3-2

SNORA70C Gene

small nucleolar RNA, H/ACA box 70C

This gene produces a small nucleolar RNA (snoRNA) that plays a role in post-transcriptional modification. This snoRNA is a type-3 retrotransposed snoRNA, where the ribosomal protein L10 gene on chromosome X is its parental gene, and this, together with part of the parental gene, was subsequently mobilized into an intron of the astrotactin 2 host gene on chromosome 9. This snoRNA contains a H/ACA box, which serves as a guide for the pseudouridylation of selected bases of ribosomal RNA by forming short duplexes with the 18S rRNA U1692, the target for this snoRNA. This gene is specific to human, chimp and orangutan, and is not found in the genomes of rhesus or marmoset. [provided by RefSeq, Jun 2010]

ASB16-AS1 Gene

ASB16 antisense RNA 1

LINC00489 Gene

long intergenic non-protein coding RNA 489

LINC01451 Gene

long intergenic non-protein coding RNA 1451

LINC01455 Gene

long intergenic non-protein coding RNA 1455

TRV-AAC1-1 Gene

transfer RNA-Val (AAC) 1-1

TRS-AGA1-1 Gene

transfer RNA-Ser (AGA) 1-1

LINC01473 Gene

long intergenic non-protein coding RNA 1473

LINC00417 Gene

long intergenic non-protein coding RNA 417

MNX1-AS1 Gene

MNX1 antisense RNA 1 (head to head)

LINC00412 Gene

long intergenic non-protein coding RNA 412

LINC00410 Gene

long intergenic non-protein coding RNA 410

TRQ-CTG12-1 Gene

transfer RNA-Gln (CTG) 12-1

RBMY2SP Gene

RNA binding motif protein, Y-linked, family 2, member S pseudogene

FALEC Gene

focally amplified long non-coding RNA in epithelial cancer

SNORA51 Gene

small nucleolar RNA, H/ACA box 51

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRV-CAC8-1 Gene

transfer RNA-Val (CAC) 8-1

RNA5SP440 Gene

RNA, 5S ribosomal pseudogene 440

RNA5SP441 Gene

RNA, 5S ribosomal pseudogene 441

RNA5SP444 Gene

RNA, 5S ribosomal pseudogene 444

RNA5SP446 Gene

RNA, 5S ribosomal pseudogene 446

RNA5SP447 Gene

RNA, 5S ribosomal pseudogene 447

SNORA11D Gene

small nucleolar RNA, H/ACA box 11D

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

NDUFB2-AS1 Gene

NDUFB2 antisense RNA 1

FGD5-AS1 Gene

FGD5 antisense RNA 1

LOC100132304 Gene

long intergenic non-protein coding RNA 684

TRH-GTG1-9 Gene

transfer RNA-His (GTG) 1-9

TRH-GTG1-2 Gene

transfer RNA-His (GTG) 1-2

LINC00268-2P Gene

long intergenic non-protein coding RNA 268-2, pseudogene

DALIR Gene

DNMT1-associated long intergenic non-coding RNA

SCARNA13 Gene

small Cajal body-specific RNA 13

Predicted to be involved in RNA processing. Located in Cajal body. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA12 Gene

small Cajal body-specific RNA 12

This gene produces a small nuclear RNA that localizes specifically to Cajal bodies, which are conserved subnuclear organelles that are present in the nucleoplasm. This RNA is processed from an intron of the prohibitin 2 host gene. It includes both an H/ACA box and a C/D box, and is thought to guide the pseudouridylation of residue U46 in the U5 small nuclear RNA. [provided by RefSeq, Jun 2010]

SCARNA11 Gene

small Cajal body-specific RNA 11

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA10 Gene

small Cajal body-specific RNA 10

Predicted to be involved in RNA processing. Located in Cajal body. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA17 Gene

small Cajal body-specific RNA 17

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA16 Gene

small Cajal body-specific RNA 16

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA15 Gene

small Cajal body-specific RNA 15

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. Predicted to be part of RISC complex. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA14 Gene

small Cajal body-specific RNA 14

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA18 Gene

small Cajal body-specific RNA 18

Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SCARNA18, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]

TRQ-CTG8-1 Gene

transfer RNA-Gln (CTG) 8-1

RNA5SP162 Gene

RNA, 5S ribosomal pseudogene 162

LINC00554 Gene

long intergenic non-protein coding RNA 554

EIF3J-AS1 Gene

EIF3J antisense RNA 1 (head to head)

LINC00254 Gene

long intergenic non-protein coding RNA 254

TRF-GAA9-1 Gene

transfer RNA-Phe (GAA) 9-1

TRR-TCG6-1 Gene

transfer RNA-Arg (TCG) 6-1

LINC00437 Gene

long intergenic non-protein coding RNA 437

TMPRSS4-AS1 Gene

TMPRSS4 antisense RNA 1

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

IGF2-AS Gene

IGF2 antisense RNA

This gene is expressed in antisense to the insulin-like growth factor 2 (IGF2) gene and is imprinted and paternally expressed. It is thought to be non-coding because the putative protein is not conserved and translation is predicted to trigger nonsense mediated decay (NMD). Transcripts from this gene are produced in tumors and may function to suppress cell growth. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2015]

SALRNA2 Gene

senescence associated long non-coding RNA 2

LINC00928 Gene

long intergenic non-protein coding RNA 928

LINC00922 Gene

long intergenic non-protein coding RNA 922

LINC00923 Gene

long intergenic non-protein coding RNA 923

LINC00921 Gene

long intergenic non-protein coding RNA 921

LINC00926 Gene

long intergenic non-protein coding RNA 926

LINC00927 Gene

long intergenic non-protein coding RNA 927

LINC00925 Gene

long intergenic non-protein coding RNA 925

BCYRN1P3 Gene

brain cytoplasmic RNA 1, pseudogene 3

H1FX-AS1 Gene

H1FX antisense RNA 1

FARP1-AS1 Gene

FARP1 antisense RNA 1

RNU7-89P Gene

RNA, U7 small nuclear 89 pseudogene

TRI-TAT3-1 Gene

transfer RNA-Ile (TAT) 3-1

MOV10 Gene

Mov10 RISC complex RNA helicase

Enables 5'-3' RNA helicase activity and RNA binding activity. Involved in defense response to virus and mRNA destabilization. Located in P-body and cytosol. Implicated in hypertension. [provided by Alliance of Genome Resources, Mar 2025]

WSPAR Gene

WNT signaling pathway activating non-coding RNA

TRV-CAC11-2 Gene

transfer RNA-Val (CAC) 11-2

HAGLR Gene

HOXD antisense growth-associated long non-coding RNA

RNA5SP84 Gene

RNA, 5S ribosomal pseudogene 84

RNY4P9 Gene

RNA, Ro-associated Y4 pseudogene 9

RNY4P8 Gene

RNA, Ro-associated Y4 pseudogene 8

RNY4P1 Gene

RNA, Ro-associated Y4 pseudogene 1

RNY4P3 Gene

RNA, Ro-associated Y4 pseudogene 3

RNY4P2 Gene

RNA, Ro-associated Y4 pseudogene 2

RNY4P5 Gene

RNA, Ro-associated Y4 pseudogene 5

RNY4P4 Gene

RNA, Ro-associated Y4 pseudogene 4

RNY4P7 Gene

RNA, Ro-associated Y4 pseudogene 7

RNY4P6 Gene

RNA, Ro-associated Y4 pseudogene 6

REXO1L1P Gene

REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene

Predicted to enable exonuclease activity. Predicted to be involved in rRNA 3'-end processing. Predicted to be located in cytoplasm. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

ZNF436-AS1 Gene

ZNF436 antisense RNA 1

RNA5SP169 Gene

RNA, 5S ribosomal pseudogene 169

UXT-AS1 Gene

UXT antisense RNA 1

TRP-GGG1-1 Gene

transfer RNA-Pro (GGG) 1-1

FOXC2-AS1 Gene

FOXC2 antisense RNA 1

SEMA3F-AS1 Gene

SEMA3F antisense RNA 1

SNORA45B Gene

small nucleolar RNA, H/ACA box 45B

Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SNORA45, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]

RNA5SP181 Gene

RNA, 5S ribosomal pseudogene 181

DIAPH2-AS1 Gene

DIAPH2 antisense RNA 1

Predicted to be involved in signal transduction. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP183 Gene

RNA, 5S ribosomal pseudogene 183

RNA5SP185 Gene

RNA, 5S ribosomal pseudogene 185

RNA5SP184 Gene

RNA, 5S ribosomal pseudogene 184

RNA5SP187 Gene

RNA, 5S ribosomal pseudogene 187

RNA5SP188 Gene

RNA, 5S ribosomal pseudogene 188

TRV-AAC1-4 Gene

transfer RNA-Val (AAC) 1-4

There appear to be about 1,300 tRNA genes in the human genome (Hatlen and Attardi, 1971 [PubMed 4929578]). Arnold et al. (1986) [PubMed 3023191] detected a minimum of 13 valine tRNA genes in genomic blots of human DNA.[supplied by OMIM, Sep 2009]

TRV-AAC1-5 Gene

transfer RNA-Val (AAC) 1-5

PIRC36 Gene

piwi-interacting RNA cluster 36

PRKCA-AS1 Gene

PRKCA antisense RNA 1

PWAR6 Gene

Prader Willi/Angelman region RNA 6

PWAR5 Gene

Prader Willi/Angelman region RNA 5

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

PWAR4 Gene

Prader Willi/Angelman region RNA 4

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

PWAR1 Gene

Prader Willi/Angelman region RNA 1

LOC100130134 Gene

staufen double-stranded RNA binding protein 2 pseudogene

ATP2A1-AS1 Gene

ATP2A1 antisense RNA 1

RCL1 Gene

RNA terminal phosphate cyclase-like 1

Predicted to enable RNA endonuclease activity. Involved in ribosomal small subunit biogenesis. Part of small-subunit processome. [provided by Alliance of Genome Resources, Mar 2025]

BRWD1-AS1 Gene

BRWD1 antisense RNA 1

RNA5SP430 Gene

RNA, 5S ribosomal pseudogene 430

PIRC28 Gene

piwi-interacting RNA cluster 28

PIRC29 Gene

piwi-interacting RNA cluster 29

PIRC21 Gene

piwi-interacting RNA cluster 21

PIRC22 Gene

piwi-interacting RNA cluster 22

PIRC24 Gene

piwi-interacting RNA cluster 24

PIRC25 Gene

piwi-interacting RNA cluster 25

LOC100131770 Gene

TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene

PIRC27 Gene

piwi-interacting RNA cluster 27

SNORA21 Gene

small nucleolar RNA, H/ACA box 21

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S5 Gene

RNA, 5S ribosomal 5

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

SNORA24 Gene

small nucleolar RNA, H/ACA box 24

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA28 Gene

small nucleolar RNA, H/ACA box 28

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA29 Gene

small nucleolar RNA, H/ACA box 29

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD118 Gene

small nucleolar RNA, C/D box 118

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD119 Gene

small nucleolar RNA, C/D box 119

SNORD117 Gene

small nucleolar RNA, C/D box 117

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD112 Gene

small nucleolar RNA, C/D box 112

Small nucleolar RNAs (snoRNAs), like SNORD112, guide the formation of 2-prime O-methylation of ribosomal RNA (rRNA) and U small nuclear RNAs (snRNAs) through a specific RNA duplex at each modification site (Cavaille et al., 2002 [PubMed 12045206]).[supplied by OMIM, Nov 2010]

SNORD110 Gene

small nucleolar RNA, C/D box 110

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD111 Gene

small nucleolar RNA, C/D box 111

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

PTOV1-AS2 Gene

PTOV1 antisense RNA 2

PTOV1-AS1 Gene

PTOV1 antisense RNA 1

RNU7-61P Gene

RNA, U7 small nuclear 61 pseudogene

LINC01338 Gene

long intergenic non-protein coding RNA 1338

LINC01339 Gene

long intergenic non-protein coding RNA 1339

LINC01330 Gene

long intergenic non-protein coding RNA 1330

LINC01331 Gene

long intergenic non-protein coding RNA 1331

SNORD11B Gene

small nucleolar RNA, C/D box 11B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC01335 Gene

long intergenic non-protein coding RNA 1335

LINC01336 Gene

long intergenic non-protein coding RNA 1336

TCERG1L-AS1 Gene

TCERG1L antisense RNA 1

TRK-TTT11-1 Gene

transfer RNA-Lys (TTT) 11-1

SHANK2-AS2 Gene

SHANK2 antisense RNA 2

SHANK2-AS3 Gene

SHANK2 antisense RNA 3

SHANK2-AS1 Gene

SHANK2 antisense RNA 1

RNU7-63P Gene

RNA, U7 small nuclear 63 pseudogene

CTR9 Gene

CTR9, Paf1/RNA polymerase II complex component

The protein encoded by this gene is a component of the PAF1 complex, which associates with RNA polymerase II and functions in transcriptional regulation and elongation. This complex also plays a role in the modification of histones. [provided by RefSeq, Oct 2016]

RNA5SP237 Gene

RNA, 5S ribosomal pseudogene 237

TRI-TAT2-2 Gene

transfer RNA-Ile (TAT) 2-2

TRI-TAT2-3 Gene

transfer RNA-Ile (TAT) 2-3

TRI-TAT2-1 Gene

transfer RNA-Ile (TAT) 2-1

LEF1-AS1 Gene

LEF1 antisense RNA 1

RNA5SP236 Gene

RNA, 5S ribosomal pseudogene 236

RNA5SP428 Gene

RNA, 5S ribosomal pseudogene 428

SOX21-AS1 Gene

SOX21 antisense RNA 1 (head to head)

RNA5SP424 Gene

RNA, 5S ribosomal pseudogene 424

RNA5SP425 Gene

RNA, 5S ribosomal pseudogene 425

RNA5SP423 Gene

RNA, 5S ribosomal pseudogene 423

TRR Gene

transfer RNA arginine

RNA5SP234 Gene

RNA, 5S ribosomal pseudogene 234

LINC00051 Gene

long intergenic non-protein coding RNA 51

MAFA-AS1 Gene

MAFA antisense RNA 1

ELL Gene

elongation factor RNA polymerase II

Enables phosphatase binding activity. Involved in positive regulation of DNA-templated transcription and snRNA transcription. Located in cytosol; euchromatin; and nuclear body. Part of transcription elongation factor complex. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP230 Gene

RNA, 5S ribosomal pseudogene 230

TRE-TTC4-1 Gene

transfer RNA-Glu (TTC) 4-1

TRE-TTC4-2 Gene

transfer RNA-Glu (TTC) 4-2

B4GALT4-AS1 Gene

B4GALT4 antisense RNA 1

TMCC1-AS1 Gene

TMCC1 antisense RNA 1 (head to head)

C9ORF41-AS1 Gene

C9orf41 antisense RNA 1

TRC-GCA7-1 Gene

transfer RNA-Cys (GCA) 7-1

RNA5SP391 Gene

RNA, 5S ribosomal pseudogene 391

RAI1-AS1 Gene

RAI1 antisense RNA 1

HM13-AS1 Gene

HM13 antisense RNA 1

LARGE-AS1 Gene

LARGE antisense RNA 1

MAGI2-AS2 Gene

MAGI2 antisense RNA 2

MAGI2-AS3 Gene

MAGI2 antisense RNA 3

MAGI2-AS1 Gene

MAGI2 antisense RNA 1

TRP-TGG5-1 Gene

transfer RNA-Pro (TGG) 5-1

ATG10-AS1 Gene

ATG10 antisense RNA 1

RNA5SP164 Gene

RNA, 5S ribosomal pseudogene 164

TRD-GTC4-1 Gene

transfer RNA-Asp (GTC) 4-1

SNAR-C5 Gene

small ILF3/NF90-associated RNA C5

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNAR-C4 Gene

small ILF3/NF90-associated RNA C4

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNAR-C1 Gene

small ILF3/NF90-associated RNA C1

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNAR-C2 Gene

small ILF3/NF90-associated RNA C2

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

TRE-TTC14-1 Gene

transfer RNA-Glu (TTC) 14-1

PSMD6-AS2 Gene

PSMD6 antisense RNA 2

LINC00332 Gene

long intergenic non-protein coding RNA 332

RNU12-2P Gene

RNA, U12 small nuclear 2, pseudogene

STAM-AS1 Gene

STAM antisense RNA 1 (head to head)

KRT73-AS1 Gene

KRT73 antisense RNA 1

LINC01317 Gene

long intergenic non-protein coding RNA 1317

LINC01048 Gene

long intergenic non-protein coding RNA 1048

RNA5SP82 Gene

RNA, 5S ribosomal pseudogene 82

RNA5SP80 Gene

RNA, 5S ribosomal pseudogene 80

RNF144A-AS1 Gene

RNF144A antisense RNA 1

SPIN4-AS1 Gene

SPIN4 antisense RNA 1

TRE-CTC5-1 Gene

transfer RNA-Glu (CTC) 5-1

RNA5SP177 Gene

RNA, 5S ribosomal pseudogene 177

LINC00494 Gene

long intergenic non-protein coding RNA 494

LINC00492 Gene

long intergenic non-protein coding RNA 492

LINC00493 Gene

long intergenic non-protein coding RNA 493

Enables protein kinase binding activity and transmembrane transporter binding activity. Located in mitochondrial outer membrane. [provided by Alliance of Genome Resources, Mar 2025]

LINC00491 Gene

long intergenic non-protein coding RNA 491

SCARNA9 Gene

small Cajal body-specific RNA 9

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA8 Gene

small Cajal body-specific RNA 8

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA7 Gene

small Cajal body-specific RNA 7

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA3 Gene

small Cajal body-specific RNA 3

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SCARNA1 Gene

small Cajal body-specific RNA 1

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC00920 Gene

long intergenic non-protein coding RNA 920

TIPARP-AS1 Gene

TIPARP antisense RNA 1

GTSE1-AS1 Gene

GTSE1 antisense RNA 1 (head to head)

ALDH1L1-AS1 Gene

ALDH1L1 antisense RNA 1

LINC01479 Gene

long intergenic non-protein coding RNA 1479

CSNK1G2-AS1 Gene

CSNK1G2 antisense RNA 1

PDX1-AS1 Gene

PDX1 antisense RNA 1

TNRC6C-AS1 Gene

TNRC6C antisense RNA 1

POLR2KP2 Gene

polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa pseudogene 2

UBR5-AS1 Gene

UBR5 antisense RNA 1

LINC01387 Gene

long intergenic non-protein coding RNA 1387

RNA5SP309 Gene

RNA, 5S ribosomal pseudogene 309

TRV-AAC7-1 Gene

transfer RNA-Val (AAC) 7-1

PAPPA-AS2 Gene

PAPPA antisense RNA 2

RNU7-46P Gene

RNA, U7 small nuclear 46 pseudogene

SNORD36A Gene

small nucleolar RNA, C/D box 36A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD36C Gene

small nucleolar RNA, C/D box 36C

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD36B Gene

small nucleolar RNA, C/D box 36B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

INTS6-AS1 Gene

INTS6 antisense RNA 1

RTCA-AS1 Gene

RTCA antisense RNA 1

TRY-GTA7-1 Gene

transfer RNA-Tyr (GTA) 7-1

MHRT Gene

myosin heavy chain-associated RNA transcript

This gene encodes a spliced long non-coding RNA that may act as a cardioprotective agent in the heart. Based on a study of a similar gene in mouse, the encoded transcript may regulate chromatin remodeling by acting as a decoy to the BRG1 chromatin repressor complex thus preventing it from binding to its genomic targets. Blocking the actions of BRG1 could be crucial in protecting the heart from pathological hypertrophy. [provided by RefSeq, Dec 2014]

RNU5A-1 Gene

RNA, U5A small nuclear 1

Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4/U6 x U5 tri-snRNP complex and U5 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

ITGB5-AS1 Gene

ITGB5 antisense RNA 1

TRN-GTT19-1 Gene

transfer RNA-Asn (GTT) 19-1

ISPD-AS1 Gene

ISPD antisense RNA 1

EHD4-AS1 Gene

EHD4 antisense RNA 1

RBM12 Gene

RNA binding motif protein 12

This gene encodes a protein that contains several RNA-binding motifs, potential transmembrane domains, and proline-rich regions. This gene and the gene for copine I overlap at map location 20q11.21. Alternative splicing in the 5' UTR results in four transcript variants. All variants encode the same protein. [provided by RefSeq, Nov 2010]

RBM11 Gene

RNA binding motif protein 11

Enables poly(U) RNA binding activity and protein homodimerization activity. Acts upstream of or within cellular response to oxidative stress and regulation of alternative mRNA splicing, via spliceosome. Located in nuclear speck. [provided by Alliance of Genome Resources, Mar 2025]

RBM10 Gene

RNA binding motif protein 10

This gene encodes a nuclear protein that belongs to a family proteins that contain an RNA-binding motif. The encoded protein associates with hnRNP proteins and may be involved in regulating alternative splicing. Defects in this gene are the cause of the X-linked recessive disorder, TARP syndrome. Alternate splicing results in multiple transcript variants.[provided by RefSeq, Mar 2011]

RBM17 Gene

RNA binding motif protein 17

This gene encodes an RNA binding protein. The encoded protein is part of the spliceosome complex and functions in the second catalytic step of mRNA splicing. Alternatively spliced transcript variants have been described. Related pseudogenes exist on chromosomes 9 and 15. [provided by RefSeq, Mar 2009]

RBM15 Gene

RNA binding motif protein 15

Members of the SPEN (Split-end) family of proteins, including RBM15, have repressor function in several signaling pathways and may bind to RNA through interaction with spliceosome components (Hiriart et al., 2005 [PubMed 16129689]).[supplied by OMIM, Feb 2009]

RBM14 Gene

RNA binding motif protein 14

This gene encodes a ribonucleoprotein that functions as a general nuclear coactivator, and an RNA splicing modulator. This protein contains two RNA recognition motifs (RRM) at the N-terminus, and multiple hexapeptide repeat domain at the C-terminus that interacts with thyroid hormone receptor-binding protein (TRBP), and is required for transcription activation. Alternatively spliced transcript variants encoding different isoforms (with opposing effects on transcription) have been described for this gene. [provided by RefSeq, Oct 2011]

RBM19 Gene

RNA binding motif protein 19

This gene encodes a nucleolar protein that contains six RNA-binding motifs. The encoded protein may be involved in regulating ribosome biogenesis. Multiple alternatively spliced variants, encoding the same protein, have been identified.[provided by RefSeq, Apr 2009]

RBM18 Gene

RNA binding motif protein 18

Predicted to enable RNA binding activity. Located in cytosol; intercellular bridge; and nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

LOC100652960 Gene

SUZ RNA binding domain containing 1 pseudogene

RRN3 Gene

RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)

Enables RNA polymerase I core promoter sequence-specific DNA binding activity and RNA polymerase I general transcription initiation factor activity. Involved in transcription initiation at RNA polymerase I promoter. Located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA38B Gene

small nucleolar RNA, H/ACA box 38B

Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LOC102725069 Gene

RNA polymerase II transcription factor SIII subunit A3-like

LOC102725060 Gene

RNA polymerase II transcription factor SIII subunit A3-like

RNU6-35P Gene

RNA, U6 small nuclear 35, pseudogene

LINC00519 Gene

long intergenic non-protein coding RNA 519

LINC00518 Gene

long intergenic non-protein coding RNA 518

LINC00511 Gene

long intergenic non-protein coding RNA 511

LINC00517 Gene

long intergenic non-protein coding RNA 517

LINC00515 Gene

long intergenic non-protein coding RNA 515

LINC00514 Gene

long intergenic non-protein coding RNA 514

KIZ-AS1 Gene

KIZ antisense RNA 1

LINC01597 Gene

long intergenic non-protein coding RNA 1597

THRIL Gene

TNF and HNRNPL related immunoregulatory long non-coding RNA

TRV-CAC9-1 Gene

transfer RNA-Val (CAC) 9-1

TRG-GCC2-3 Gene

transfer RNA-Gly (GCC) 2-3

TRG-GCC2-1 Gene

transfer RNA-Gly (GCC) 2-1

NALCN-AS1 Gene

NALCN antisense RNA 1

STAU2 Gene

staufen double-stranded RNA binding protein 2

Staufen homolog 2 is a member of the family of double-stranded RNA (dsRNA)-binding proteins involved in the transport and/or localization of mRNAs to different subcellular compartments and/or organelles. These proteins are characterized by the presence of multiple dsRNA-binding domains which are required to bind RNAs having double-stranded secondary structures. Staufen homolog 2 shares 48.5% and 59.9% similarity with drosophila and human staufen, respectively. The exact function of Staufen homolog 2 is not known, but since it contains 3 copies of conserved dsRNA binding domain, it could be involved in double-stranded RNA binding events. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2009]

RNA5SP273 Gene

RNA, 5S ribosomal pseudogene 273

RNA5SP272 Gene

RNA, 5S ribosomal pseudogene 272

RNA5SP271 Gene

RNA, 5S ribosomal pseudogene 271

RNA5SP270 Gene

RNA, 5S ribosomal pseudogene 270

RNA5SP277 Gene

RNA, 5S ribosomal pseudogene 277

RNA5SP276 Gene

RNA, 5S ribosomal pseudogene 276

RNA5SP275 Gene

RNA, 5S ribosomal pseudogene 275

RNA5SP274 Gene

RNA, 5S ribosomal pseudogene 274

RNA5SP279 Gene

RNA, 5S ribosomal pseudogene 279

RNA5SP278 Gene

RNA, 5S ribosomal pseudogene 278

RNY1P1 Gene

RNA, Ro-associated Y1 pseudogene 1

RNY1P8 Gene

RNA, Ro-associated Y1 pseudogene 8

POLR3DP1 Gene

polymerase (RNA) III (DNA directed) polypeptide D, 44kDa pseudogene 1

BTAF1 Gene

BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa

This gene encodes a TAF (TATA box-binding protein-associated factor), which associates with TBP (TATA box-binding protein) to form the B-TFIID complex that is required for transcription initiation of genes by RNA polymerase II. This TAF has DNA-dependent ATPase activity, which drives the dissociation of TBP from DNA, freeing the TBP to associate with other TATA boxes or TATA-less promoters. [provided by RefSeq, Sep 2011]

TRA-AGC16-1 Gene

transfer RNA-Ala (AGC) 16-1

PLCB2-AS1 Gene

PLCB2 antisense RNA 1

TRE-CTC13-1 Gene

transfer RNA-Glu (CTC) 13-1

SNORD116-9 Gene

small nucleolar RNA, C/D box 116-9

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-8 Gene

small nucleolar RNA, C/D box 116-8

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-4 Gene

small nucleolar RNA, C/D box 116-4

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-1 Gene

small nucleolar RNA, C/D box 116-1

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-3 Gene

small nucleolar RNA, C/D box 116-3

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-2 Gene

small nucleolar RNA, C/D box 116-2

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNU7-40P Gene

RNA, U7 small nuclear 40 pseudogene

RNU7-69P Gene

RNA, U7 small nuclear 69 pseudogene

RNU7-34P Gene

RNA, U7 small nuclear 34 pseudogene

SNORD19B Gene

small nucleolar RNA, C/D box 19B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC01333 Gene

long intergenic non-protein coding RNA 1333

FRMPD3-AS1 Gene

FRMPD3 antisense RNA 1

LINC00319 Gene

long intergenic non-protein coding RNA 319

ZRSR2 Gene

zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2

This gene encodes an essential splicing factor. The encoded protein associates with the U2 auxiliary factor heterodimer, which is required for the recognition of a functional 3' splice site in pre-mRNA splicing, and may play a role in network interactions during spliceosome assembly. [provided by RefSeq, Jul 2008]

GPC6-AS1 Gene

GPC6 antisense RNA 1

GPC6-AS2 Gene

GPC6 antisense RNA 2

LINC00237 Gene

long intergenic non-protein coding RNA 237

OSMR-AS1 Gene

OSMR antisense RNA 1 (head to head)

TRA-CGC5-1 Gene

transfer RNA-Ala (CGC) 5-1

TRE-CTC11-1 Gene

transfer RNA-Glu (CTC) 11-1

UBXN10-AS1 Gene

UBXN10 antisense RNA 1

LINC01072 Gene

long intergenic non-protein coding RNA 1072

LINC01070 Gene

long intergenic non-protein coding RNA 1070

LINC01075 Gene

long intergenic non-protein coding RNA 1075

STARD7-AS1 Gene

STARD7 antisense RNA 1

LINC00308 Gene

long intergenic non-protein coding RNA 308

LINC00309 Gene

long intergenic non-protein coding RNA 309

LINC00302 Gene

long intergenic non-protein coding RNA 302

LINC00303 Gene

long intergenic non-protein coding RNA 303

LINC00301 Gene

long intergenic non-protein coding RNA 301

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

LINC00307 Gene

long intergenic non-protein coding RNA 307

LINC00304 Gene

long intergenic non-protein coding RNA 304

LINC00305 Gene

long intergenic non-protein coding RNA 305

Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Mar 2025]

LINC01429 Gene

long intergenic non-protein coding RNA 1429

TRL-TAA5-1 Gene

transfer RNA-Leu (TAA) 5-1

KHDRBS1 Gene

KH domain containing, RNA binding, signal transduction associated 1

This gene encodes a member of the K homology domain-containing, RNA-binding, signal transduction-associated protein family. The encoded protein appears to have many functions and may be involved in a variety of cellular processes, including alternative splicing, cell cycle regulation, RNA 3'-end formation, tumorigenesis, and regulation of human immunodeficiency virus gene expression. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2012]

KHDRBS3 Gene

KH domain containing, RNA binding, signal transduction associated 3

Enables RNA binding activity; identical protein binding activity; and protein domain specific binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome and spermatogenesis. Located in nucleoplasm. Part of protein-containing complex. [provided by Alliance of Genome Resources, Mar 2025]

B4GALT1-AS1 Gene

B4GALT1 antisense RNA 1

SLFNL1-AS1 Gene

SLFNL1 antisense RNA 1

PRR7-AS1 Gene

PRR7 antisense RNA 1

PSMB8-AS1 Gene

PSMB8 antisense RNA 1 (head to head)

LINC01170 Gene

long intergenic non-protein coding RNA 1170

TTC3-AS1 Gene

TTC3 antisense RNA 1

TRV-TAC1-1 Gene

transfer RNA-Val (TAC) 1-1

TRV-TAC1-2 Gene

transfer RNA-Val (TAC) 1-2

C1QTNF1-AS1 Gene

C1QTNF1 antisense RNA 1

SPACA6P-AS Gene

SPACA6P antisense RNA

Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex. [provided by Alliance of Genome Resources, Mar 2025]

RNU5B-4P Gene

RNA, U5B small nuclear 4, pseudogene

TNKS2-AS1 Gene

TNKS2 antisense RNA 1 (head to head)

RNU7-55P Gene

RNA, U7 small nuclear 55 pseudogene

LINC01279 Gene

long intergenic non-protein coding RNA 1279

LINC01278 Gene

long intergenic non-protein coding RNA 1278

LINC01277 Gene

long intergenic non-protein coding RNA 1277

LINC01271 Gene

long intergenic non-protein coding RNA 1271

LINC01270 Gene

long intergenic non-protein coding RNA 1270

LINC01273 Gene

long intergenic non-protein coding RNA 1273

TRA-AGC12-2 Gene

transfer RNA-Ala (AGC) 12-2

TRA-AGC12-1 Gene

transfer RNA-Ala (AGC) 12-1

NCK1-AS1 Gene

NCK1 antisense RNA 1 (head to head)

UMODL1-AS1 Gene

UMODL1 antisense RNA 1

SWT1 Gene

SWT1 RNA endoribonuclease homolog (S. cerevisiae)

Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SFTPD-AS1 Gene

SFTPD antisense RNA 1

RNU5A-3P Gene

RNA, U5A small nuclear 3, pseudogene

TRQ-CTG7-1 Gene

transfer RNA-Gln (CTG) 7-1

TRE-CTC10-1 Gene

transfer RNA-Glu (CTC) 10-1

ZNF571-AS1 Gene

ZNF571 antisense RNA 1

TRQ-TTG1-1 Gene

transfer RNA-Gln (TTG) 1-1

Mammalian cells contain at least 2 species of glutamine tRNA, the Gln(CUG) form (TRQ1; MIM 189919) and the Gln(UUG) form. Nemoto et al. (1991) [PubMed 2041751] reported the nucleotide sequence of the human tRNA(Gln/UUG) gene. In a correction, Nemoto et al. (1991) [PubMed 2041751] stated that the gene involved should have been designated tRNA-GLN/U*UG, where U* is a derivative of U.[supplied by OMIM, Sep 2009]

ISM1-AS1 Gene

ISM1 antisense RNA 1

SNORD21 Gene

small nucleolar RNA, C/D box 21

This gene encodes a small nucleolar RNA (snoRNA) that may be involved in biogenesis of the large (28S) ribosomal subunit. This gene is found within an intron of the RPL5 gene. [provided by RefSeq, Mar 2009]

SNORD20 Gene

small nucleolar RNA, C/D box 20

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD22 Gene

small nucleolar RNA, C/D box 22

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD25 Gene

small nucleolar RNA, C/D box 25

SNORD24 Gene

small nucleolar RNA, C/D box 24

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD27 Gene

small nucleolar RNA, C/D box 27

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD26 Gene

small nucleolar RNA, C/D box 26

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD29 Gene

small nucleolar RNA, C/D box 29

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD28 Gene

small nucleolar RNA, C/D box 28

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RBMY2HP Gene

RNA binding motif protein, Y-linked, family 2, member H pseudogene

SIAH2-AS1 Gene

SIAH2 antisense RNA 1

TRP-TGG4-1 Gene

transfer RNA-Pro (TGG) 4-1

RNA5SP47 Gene

RNA, 5S ribosomal pseudogene 47

RNA5SP46 Gene

RNA, 5S ribosomal pseudogene 46

RNA5SP45 Gene

RNA, 5S ribosomal pseudogene 45

RNA5SP44 Gene

RNA, 5S ribosomal pseudogene 44

RNA5SP43 Gene

RNA, 5S ribosomal pseudogene 43

RNA5SP42 Gene

RNA, 5S ribosomal pseudogene 42

RNA5SP41 Gene

RNA, 5S ribosomal pseudogene 41

RNA5SP40 Gene

RNA, 5S ribosomal pseudogene 40

RNA5SP49 Gene

RNA, 5S ribosomal pseudogene 49

RNA5SP48 Gene

RNA, 5S ribosomal pseudogene 48

L3MBTL4-AS1 Gene

L3MBTL4 antisense RNA 1

HOXB-AS2 Gene

HOXB cluster antisense RNA 2

RBMXP4 Gene

RNA binding motif protein, X-linked pseudogene 4

RBMXP1 Gene

RNA binding motif protein, X-linked pseudogene 1

RBMXP3 Gene

RNA binding motif protein, X-linked pseudogene 3

RBMXP2 Gene

RNA binding motif protein, X-linked pseudogene 2

TRE-TTC15-1 Gene

transfer RNA-Glu (TTC) 15-1

RNA5SP349 Gene

RNA, 5S ribosomal pseudogene 349

RNA5SP348 Gene

RNA, 5S ribosomal pseudogene 348

RNA5SP346 Gene

RNA, 5S ribosomal pseudogene 346

RNA5SP345 Gene

RNA, 5S ribosomal pseudogene 345

RNA5SP344 Gene

RNA, 5S ribosomal pseudogene 344

RNA5SP343 Gene

RNA, 5S ribosomal pseudogene 343

RNA5SP341 Gene

RNA, 5S ribosomal pseudogene 341

RNU105C Gene

RNA, U105C small nucleolar

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRR-CCT3-1 Gene

transfer RNA-Arg (CCT) 3-1

LOC100289238 Gene

zinc finger RNA binding protein pseudogene

LOC100287757 Gene

SRA stem-loop interacting RNA binding protein pseudogene

DPP9-AS1 Gene

DPP9 antisense RNA 1

LOC400347 Gene

REX4, RNA exonuclease 4 homolog (S. cerevisiae) pseudogene

ADIPOQ-AS1 Gene

ADIPOQ antisense RNA 1

TRV-TAC2-1 Gene

transfer RNA-Val (TAC) 2-1

TRS-ACT1-1 Gene

transfer RNA-Ser (ACT) 1-1

LINC00593 Gene

long intergenic non-protein coding RNA 593

LINC00592 Gene

long intergenic non-protein coding RNA 592

LINC00597 Gene

long intergenic non-protein coding RNA 597

LINC00596 Gene

long intergenic non-protein coding RNA 596

LINC00595 Gene

long intergenic non-protein coding RNA 595

LINC00594 Gene

long intergenic non-protein coding RNA 594

LBX2-AS1 Gene

LBX2 antisense RNA 1

TRA-AGC13-1 Gene

transfer RNA-Ala (AGC) 13-1

RNY4P20 Gene

RNA, Ro-associated Y4 pseudogene 20

RNY4P21 Gene

RNA, Ro-associated Y4 pseudogene 21

RNY4P22 Gene

RNA, Ro-associated Y4 pseudogene 22

RNY4P24 Gene

RNA, Ro-associated Y4 pseudogene 24

RNY4P25 Gene

RNA, Ro-associated Y4 pseudogene 25

RRP36 Gene

ribosomal RNA processing 36 homolog (S. cerevisiae)

RRP36 functions at an early stage in the processing of 35S preribosomal RNA into the mature 18S species (Gerus et al., 2010 [PubMed 20038530]).[supplied by OMIM, Jul 2010]

RNY4P27 Gene

RNA, Ro-associated Y4 pseudogene 27

RNY4P29 Gene

RNA, Ro-associated Y4 pseudogene 29

SZRD1 Gene

SUZ RNA binding domain containing 1

EPHA5-AS1 Gene

EPHA5 antisense RNA 1

OXCT1-AS1 Gene

OXCT1 antisense RNA 1

GRM7-AS1 Gene

GRM7 antisense RNA 1

GRM7-AS2 Gene

GRM7 antisense RNA 2

GRM7-AS3 Gene

GRM7 antisense RNA 3

SNAR-A9 Gene

small ILF3/NF90-associated RNA A9

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

RNU7-26P Gene

RNA, U7 small nuclear 26 pseudogene

SNAR-A1 Gene

small ILF3/NF90-associated RNA A1

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

PTENP1-AS Gene

PTENP1 antisense RNA

PTENP1-AS encodes an antisense RNA (asRNA) of PTENP1, a PTEN (phosphatase and tensin homolog) pseudogene. PTENP1 regulates PTEN by both sense (GeneID: 11191) and antisense RNAs. This antisense RNA (PTENP1-AS) regulates PTEN transcription and mRNA stability. [provided by RefSeq, Jun 2020]

ARHGAP31-AS1 Gene

ARHGAP31 antisense RNA 1

MIS18A-AS1 Gene

MIS18A antisense RNA 1

FAM170B-AS1 Gene

FAM170B antisense RNA 1

KCNQ5-AS1 Gene

KCNQ5 antisense RNA 1

TRA-TGC2-1 Gene

transfer RNA-Ala (TGC) 2-1

CD81-AS1 Gene

CD81 antisense RNA 1

ELAVL4 Gene

ELAV like neuron-specific RNA binding protein 4

Enables mRNA 3'-UTR AU-rich region binding activity; poly(A) binding activity; and pre-mRNA intronic pyrimidine-rich binding activity. Involved in 3'-UTR-mediated mRNA stabilization; RNA processing; and positive regulation of 3'-UTR-mediated mRNA stabilization. Predicted to be located in axon; cytoplasm; and dendrite. Predicted to be part of ribonucleoprotein complex. Predicted to be active in glutamatergic synapse. [provided by Alliance of Genome Resources, Mar 2025]

ELAVL1 Gene

ELAV like RNA binding protein 1

The protein encoded by this gene is a member of the ELAVL family of RNA-binding proteins that contain several RNA recognition motifs, and selectively bind AU-rich elements (AREs) found in the 3' untranslated regions of mRNAs. AREs signal degradation of mRNAs as a means to regulate gene expression, thus by binding AREs, the ELAVL family of proteins play a role in stabilizing ARE-containing mRNAs. This gene has been implicated in a variety of biological processes and has been linked to a number of diseases, including cancer. It is highly expressed in many cancers, and could be potentially useful in cancer diagnosis, prognosis, and therapy. [provided by RefSeq, Sep 2012]

ELAVL2 Gene

ELAV like neuron-specific RNA binding protein 2

In humans, the ELAV like RNA binding protein gene family has four members (ELAVL1-4). ELAVL RNA binding proteins recognize AU-rich elements in the 3' UTRs of gene transcripts and thereby regulate gene expression post-transcriptionally. The protein encoded by this gene binds to several 3' UTRs, including its own and also that of FOS, ID, and POU5F1. This gene encodes ELAVL2 and, like ELAVL3 and ELAVL4, is expressed specifically in neurons and primarily localizes to the cytoplasm. This protein also forms a cytosolic complex with the normally nuclear-localized ELAVL1 protein. Alternative splicing of this gene results in multiple transcript variants encoding distinct protein isoforms. [provided by RefSeq, Jul 2020]

ELAVL3 Gene

ELAV like neuron-specific RNA binding protein 3

A member of the ELAVL protein family, ELAV-like 3 is a neural-specific RNA-binding protein which contains three RNP-type RNA recognition motifs. The observation that ELAVL3 is one of several Hu antigens (neuronal-specific RNA-binding proteins) recognized by the anti-Hu serum antibody present in sera from patients with paraneoplastic encephalomyelitis and sensory neuronopathy (PEM/PSN) suggests it has a role in neurogenesis. Two alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

BIRC6-AS1 Gene

BIRC6 antisense RNA 1

LINC00578 Gene

long intergenic non-protein coding RNA 578

LINC00570 Gene

long intergenic non-protein coding RNA 570

BCYRN1P2 Gene

brain cytoplasmic RNA 1, pseudogene 2

BCYRN1P1 Gene

brain cytoplasmic RNA 1, pseudogene 1

RNVU1-8 Gene

RNA, variant U1 small nuclear 8

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNVU1-4 Gene

RNA, variant U1 small nuclear 4

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

LPP-AS1 Gene

LPP antisense RNA 1

RNVU1-6 Gene

RNA, variant U1 small nuclear 6

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be located in nucleus. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNVU1-7 Gene

RNA, variant U1 small nuclear 7

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNVU1-1 Gene

RNA, variant U1 small nuclear 1

EP300-AS1 Gene

EP300 antisense RNA 1

LOC105373057 Gene

DNA-directed RNA polymerase II subunit RPB1-like

PIRC79 Gene

piwi-interacting RNA cluster 79

PIRC78 Gene

piwi-interacting RNA cluster 78

SNORA20 Gene

small nucleolar RNA, H/ACA box 20

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA22 Gene

small nucleolar RNA, H/ACA box 22

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA23 Gene

small nucleolar RNA, H/ACA box 23

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA25 Gene

small nucleolar RNA, H/ACA box 25

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA26 Gene

small nucleolar RNA, H/ACA box 26

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA27 Gene

small nucleolar RNA, H/ACA box 27

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA2A Gene

small nucleolar RNA, H/ACA box 2A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA2B Gene

small nucleolar RNA, H/ACA box 2B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

U2AF1 Gene

U2 small nuclear RNA auxiliary factor 1

This gene belongs to the splicing factor SR family of genes. U2 auxiliary factor, comprising a large and a small subunit, is a non-snRNP protein required for the binding of U2 snRNP to the pre-mRNA branch site. This gene encodes the small subunit which plays a critical role in both constitutive and enhancer-dependent RNA splicing by directly mediating interactions between the large subunit and proteins bound to the enhancers. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]

U2AF2 Gene

U2 small nuclear RNA auxiliary factor 2

U2 auxiliary factor (U2AF), comprised of a large and a small subunit, is a non-snRNP protein required for the binding of U2 snRNP to the pre-mRNA branch site. This gene encodes the U2AF large subunit which contains a sequence-specific RNA-binding region with 3 RNA recognition motifs and an Arg/Ser-rich domain necessary for splicing. The large subunit binds to the polypyrimidine tract of introns early during spliceosome assembly. Multiple transcript variants have been detected for this gene, but the full-length natures of only two have been determined to date. [provided by RefSeq, Jul 2008]

PIRC71 Gene

piwi-interacting RNA cluster 71

PIRC70 Gene

piwi-interacting RNA cluster 70

TRT-AGT2-1 Gene

transfer RNA-Thr (AGT) 2-1

LINC01569 Gene

long intergenic non-protein coding RNA 1569

LINC01568 Gene

long intergenic non-protein coding RNA 1568

LINC01565 Gene

long intergenic non-protein coding RNA 1565

LINC01564 Gene

long intergenic non-protein coding RNA 1564

LINC01567 Gene

long intergenic non-protein coding RNA 1567

LINC01566 Gene

long intergenic non-protein coding RNA 1566

LINC01561 Gene

long intergenic non-protein coding RNA 1561

LINC01560 Gene

long intergenic non-protein coding RNA 1560

LINC01563 Gene

long intergenic non-protein coding RNA 1563

LINC01562 Gene

long intergenic non-protein coding RNA 1562

RTCB Gene

RNA 2',3'-cyclic phosphate and 5'-OH ligase

Enables RNA ligase (GTP) activity and vinculin binding activity. Involved in tRNA splicing, via endonucleolytic cleavage and ligation. Located in cytosol and nucleoplasm. Part of tRNA-splicing ligase complex. [provided by Alliance of Genome Resources, Mar 2025]

RTCA Gene

RNA 3'-terminal phosphate cyclase

This gene encodes a member of the RNA 3'-phosphate cyclase family. The encoded protein plays a role in RNA metabolism by catalyzing the ATP-dependent conversion of the 3'-phosphate of RNA substrates to a 2',3'-cyclic phosphodiester. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Feb 2012]

USP2-AS1 Gene

USP2 antisense RNA 1 (head to head)

SPTY2D1-AS1 Gene

SPTY2D1 antisense RNA 1

Predicted to be involved in sperm mitochondrial sheath assembly. Predicted to be located in mitochondrial outer membrane. [provided by Alliance of Genome Resources, Mar 2025]

LINC01389 Gene

long intergenic non-protein coding RNA 1389

LINC01386 Gene

long intergenic non-protein coding RNA 1386

PAPPA-AS1 Gene

PAPPA antisense RNA 1

Predicted to be located in endoplasmic reticulum membrane. [provided by Alliance of Genome Resources, Mar 2025]

LINC00382 Gene

long intergenic non-protein coding RNA 382

LINC00383 Gene

long intergenic non-protein coding RNA 383

LINC00380 Gene

long intergenic non-protein coding RNA 380

LINC00381 Gene

long intergenic non-protein coding RNA 381

LINC00387 Gene

long intergenic non-protein coding RNA 387

LINC00384 Gene

long intergenic non-protein coding RNA 384

LINC00388 Gene

long intergenic non-protein coding RNA 388

RBM34 Gene

RNA binding motif protein 34

This gene encodes a member of the RNA-binding motif family of RNA recognition motif proteins. The encoded protein contains an RNA-binding domain made up of two RNA recognition motif subdomains referred to as RNA recognition motif-1 and RNA recognition motif-2. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2016]

LOC646066 Gene

TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene

Predicted to enable protein heterodimerization activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. [provided by Alliance of Genome Resources, Mar 2025]

TRL-AAG1-1 Gene

transfer RNA-Leu (AAG) 1-1

TRL-AAG1-2 Gene

transfer RNA-Leu (AAG) 1-2

TRL-AAG1-3 Gene

transfer RNA-Leu (AAG) 1-3

C8ORF34-AS1 Gene

C8orf34 antisense RNA 1

TRV-CAC1-4 Gene

transfer RNA-Val (CAC) 1-4

TRC-GCA18-1 Gene

transfer RNA-Cys (GCA) 18-1

BIRC6-AS2 Gene

BIRC6 antisense RNA 2

PEX5L-AS2 Gene

PEX5L antisense RNA 2

LINC00854 Gene

long intergenic non-protein coding RNA 854

DHRS4-AS1 Gene

DHRS4 antisense RNA 1

RNU6-75P Gene

RNA, U6 small nuclear 75, pseudogene

TRE-CTC12-1 Gene

transfer RNA-Glu (CTC) 12-1

SNORD56B Gene

small nucleolar RNA, C/D box 56B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNU5E-4P Gene

RNA, U5E small nuclear 4, pseudogene

LINC01436 Gene

long intergenic non-protein coding RNA 1436

COX10-AS1 Gene

COX10 antisense RNA 1

P3H2-AS1 Gene

P3H2 antisense RNA 1

PLS3-AS1 Gene

PLS3 antisense RNA 1

LINC00856 Gene

long intergenic non-protein coding RNA 856

LINC00857 Gene

long intergenic non-protein coding RNA 857

LINC00852 Gene

long intergenic non-protein coding RNA 852

LINC00853 Gene

long intergenic non-protein coding RNA 853

LINC00850 Gene

long intergenic non-protein coding RNA 850

LINC00851 Gene

long intergenic non-protein coding RNA 851

TRP-AGG2-6 Gene

transfer RNA-Pro (AGG) 2-6

LINC00858 Gene

long intergenic non-protein coding RNA 858

SLC16A1-AS1 Gene

SLC16A1 antisense RNA 1

REXO1 Gene

REX1, RNA exonuclease 1 homolog (S. cerevisiae)

Predicted to enable exonuclease activity. Predicted to be involved in rRNA 3'-end processing. Located in nuclear body. [provided by Alliance of Genome Resources, Mar 2025]

REXO2 Gene

RNA exonuclease 2

This gene encodes a 3'-to-5' exonuclease specific for small (primarily 5 nucleotides or less in length) single-stranded RNA and DNA oligomers. This protein may have a role in DNA repair, replication, and recombination, and in RNA processing and degradation. It may also be involved in resistance of human cells to UV-C-induced cell death through its role in the DNA repair process. [provided by RefSeq, Nov 2011]

REXO4 Gene

REX4, RNA exonuclease 4 homolog (S. cerevisiae)

Enables DNA binding activity and nuclease activity. Involved in DNA catabolic process and DNA repair. Located in nuclear speck and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC01486 Gene

long intergenic non-protein coding RNA 1486

RNA5SP212 Gene

RNA, 5S ribosomal pseudogene 212

LINC01481 Gene

long intergenic non-protein coding RNA 1481

RNA5SP215 Gene

RNA, 5S ribosomal pseudogene 215

LINC01488 Gene

long intergenic non-protein coding RNA 1488

RNA5SP214 Gene

RNA, 5S ribosomal pseudogene 214

RNA5SP216 Gene

RNA, 5S ribosomal pseudogene 216

TMEM51-AS1 Gene

TMEM51 antisense RNA 1

SNCA-AS1 Gene

SNCA antisense RNA 1

LINC00469 Gene

long intergenic non-protein coding RNA 469

LINC00467 Gene

long intergenic non-protein coding RNA 467

LINC00463 Gene

long intergenic non-protein coding RNA 463

LINC00462 Gene

long intergenic non-protein coding RNA 462

LINC00461 Gene

long intergenic non-protein coding RNA 461

This is an evolutionarily conserved gene that produces alternatively spliced long non-coding RNAs that may be expressed predominantly in the brain and visual cortex. These transcripts may be involved in tumorigenesis, as depletion by siRNA suppressed glioma cell division. Transcripts may also bind to and regulate the activity of miR-411-5p and argonaut 2, thereby altering the expression of genes involved in tumor growth. [provided by RefSeq, Nov 2017]

LINC00460 Gene

long intergenic non-protein coding RNA 460

C9ORF135-AS1 Gene

C9orf135 antisense RNA 1 (head to head)

SNORD116-20 Gene

small nucleolar RNA, C/D box 116-20

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

APOBEC3B-AS1 Gene

APOBEC3B antisense RNA 1

KIN Gene

Kin17 DNA and RNA binding protein

The protein encoded by this gene is a nuclear protein that forms intranuclear foci during proliferation and is redistributed in the nucleoplasm during the cell cycle. Short-wave ultraviolet light provokes the relocalization of the protein, suggesting its participation in the cellular response to DNA damage. Originally selected based on protein-binding with RecA antibodies, the mouse protein presents a limited similarity with a functional domain of the bacterial RecA protein, a characteristic shared by this human ortholog. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jan 2012]

RNA5SP471 Gene

RNA, 5S ribosomal pseudogene 471

RNA5SP475 Gene

RNA, 5S ribosomal pseudogene 475

RNA5SP474 Gene

RNA, 5S ribosomal pseudogene 474

TRC-GCA19-1 Gene

transfer RNA-Cys (GCA) 19-1

RNA5SP479 Gene

RNA, 5S ribosomal pseudogene 479

RNA5SP478 Gene

RNA, 5S ribosomal pseudogene 478

SNORD116-29 Gene

small nucleolar RNA, C/D box 116-29

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

ATP1A1-AS1 Gene

ATP1A1 antisense RNA 1

POLR2J4 Gene

polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene

POLR2J2 Gene

polymerase (RNA) II (DNA directed) polypeptide J2

This gene is a member of the RNA polymerase II subunit 11 gene family, which includes three genes in a cluster on chromosome 7q22.1 and a pseudogene on chromosome 7p13. The founding member of this family, DNA directed RNA polymerase II polypeptide J, has been shown to encode a subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. This locus produces multiple, alternatively spliced transcripts that potentially express isoforms with distinct C-termini compared to DNA directed RNA polymerase II polypeptide J. Most or all variants are spliced to include additional non-coding exons at the 3' end which makes them candidates for nonsense-mediated decay (NMD). Consequently, it is not known if this locus expresses a protein or proteins in vivo. [provided by RefSeq, Jul 2008]

POLR2J3 Gene

polymerase (RNA) II (DNA directed) polypeptide J3

This gene is a member of the RNA polymerase II subunit 11 gene family, which includes three genes in a cluster on chromosome 7q22.1 and a pseudogene on chromosome 7p13. The founding member of this family, DNA directed RNA polymerase II polypeptide J, has been shown to encode a subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. This locus produces multiple, alternatively spliced transcripts that potentially express isoforms with distinct C-termini compared to DNA directed RNA polymerase II polypeptide J. Most or all variants are spliced to include additional non-coding exons at the 3' end which makes them candidates for nonsense-mediated decay (NMD). Consequently, it is not known if this locus expresses a protein or proteins in vivo. [provided by RefSeq, Jul 2008]

ZNF337-AS1 Gene

ZNF337 antisense RNA 1

LINC01127 Gene

long intergenic non-protein coding RNA 1127

SIDT1-AS1 Gene

SIDT1 antisense RNA 1

RNU1-11P Gene

RNA, U1 small nuclear 11, pseudogene

RNU7-7P Gene

RNA, U7 small nuclear 7 pseudogene

RNU6-81P Gene

RNA, U6 small nuclear 81, pseudogene

TRN-GTT18-1 Gene

transfer RNA-Asn (GTT) 18-1

ADORA2A-AS1 Gene

ADORA2A antisense RNA 1

LINC01487 Gene

long intergenic non-protein coding RNA 1487

LINC01485 Gene

long intergenic non-protein coding RNA 1485

LINC01482 Gene

long intergenic non-protein coding RNA 1482

LINC01480 Gene

long intergenic non-protein coding RNA 1480

TRPM2-AS Gene

TRPM2 antisense RNA

LINC01138 Gene

long intergenic non-protein coding RNA 1138

LINC01139 Gene

long intergenic non-protein coding RNA 1139

LINC01136 Gene

long intergenic non-protein coding RNA 1136

LINC01137 Gene

long intergenic non-protein coding RNA 1137

LINC01134 Gene

long intergenic non-protein coding RNA 1134

LINC01135 Gene

long intergenic non-protein coding RNA 1135

LINC01132 Gene

long intergenic non-protein coding RNA 1132

LINC01133 Gene

long intergenic non-protein coding RNA 1133

LINC01489 Gene

long intergenic non-protein coding RNA 1489

TRD-GTC2-4 Gene

transfer RNA-Asp (GTC) 2-4

TRD-GTC2-5 Gene

transfer RNA-Asp (GTC) 2-5

RNU7-76P Gene

RNA, U7 small nuclear 76 pseudogene

TRY-GTA11-1 Gene

transfer RNA-Tyr (GTA) 11-1

LINC00261 Gene

long intergenic non-protein coding RNA 261

This gene produces a long non-coding RNA that acts as a negative regulator of cell growth. This transcript may promote differentiation and apoptosis. [provided by RefSeq, Dec 2017]

LINC00260 Gene

long intergenic non-protein coding RNA 260

LINC00265 Gene

long intergenic non-protein coding RNA 265

LINC00264 Gene

long intergenic non-protein coding RNA 264

TRY-GTA3-1 Gene

transfer RNA-Tyr (GTA) 3-1

LINC00269 Gene

long intergenic non-protein coding RNA 269

LINC00268 Gene

long intergenic non-protein coding RNA 268

TRD-GTC2-1 Gene

transfer RNA-Asp (GTC) 2-1

TRG-CCC8-1 Gene

transfer RNA-Gly (CCC) 8-1

TAF6L Gene

TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes a protein that is a component of the PCAF histone acetylase complex and structurally similar to one of the histone-like TAFs, TAF6. The PCAF histone acetylase complex, which is composed of more than 20 polypeptides some of which are TAFs, is required for myogenic transcription and differentiation. [provided by RefSeq, Jul 2008]

TRE-TTC2-2 Gene

transfer RNA-Glu (TTC) 2-2

MRGPRF-AS1 Gene

MRGPRF antisense RNA 1

TRC-GCA17-1 Gene

transfer RNA-Cys (GCA) 17-1

CSDE1 Gene

cold shock domain containing E1, RNA-binding

Enables RISC complex binding activity; RNA stem-loop binding activity; and lncRNA binding activity. Involved in IRES-dependent viral translational initiation; regulation of gene expression; and stress granule assembly. Located in Golgi apparatus; cytosol; and plasma membrane. Part of CRD-mediated mRNA stability complex and mCRD-mediated mRNA stability complex. [provided by Alliance of Genome Resources, Mar 2025]

RBM22P6 Gene

RNA binding motif protein 22 pseudogene 6

RBM22P4 Gene

RNA binding motif protein 22 pseudogene 4

RBM22P5 Gene

RNA binding motif protein 22 pseudogene 5

RBM22P2 Gene

RNA binding motif protein 22 pseudogene 2

RBM22P3 Gene

RNA binding motif protein 22 pseudogene 3

RBM22P1 Gene

RNA binding motif protein 22 pseudogene 1

TRNAT-CGU Gene

transfer RNA threonine (anticodon CGU)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

LINGO1-AS1 Gene

LINGO1 antisense RNA 1

LINGO1-AS2 Gene

LINGO1 antisense RNA 2

IGF2BP2-AS1 Gene

IGF2BP2 antisense RNA 1

FZD10-AS1 Gene

FZD10 antisense RNA 1 (head to head)

PCOLCE-AS1 Gene

PCOLCE antisense RNA 1

TRK-CTT16-1 Gene

transfer RNA-Lys (CTT) 16-1

LOC149844 Gene

synaptotagmin binding, cytoplasmic RNA interacting protein pseudogene

RNU4-2 Gene

RNA, U4 small nuclear 2

Predicted to enable U6 snRNA binding activity. Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4 snRNP and U4/U6 x U5 tri-snRNP complex. [provided by Alliance of Genome Resources, Mar 2025]

PIRC9 Gene

piwi-interacting RNA cluster 9

PIRC5 Gene

piwi-interacting RNA cluster 5

PIRC1 Gene

piwi-interacting RNA cluster 1

PIRC3 Gene

piwi-interacting RNA cluster 3

PIRC2 Gene

piwi-interacting RNA cluster 2

ITFG1-AS1 Gene

ITFG1 antisense RNA 1

SLC25A21-AS1 Gene

SLC25A21 antisense RNA 1

PIRC48 Gene

piwi-interacting RNA cluster 48

PIRC49 Gene

piwi-interacting RNA cluster 49

BEAN1-AS1 Gene

BEAN1 antisense RNA 1

CARS-AS1 Gene

CARS antisense RNA 1

LOC100913179 Gene

SRA stem-loop interacting RNA binding protein pseudogene

PKNOX2-AS1 Gene

PKNOX2 antisense RNA 1 (head to head)

VWA8-AS1 Gene

VWA8 antisense RNA 1 (head to head)

AGAP2-AS1 Gene

AGAP2 antisense RNA 1

Biomarker of lung non-small cell carcinoma; malignant astrocytoma; and stomach cancer. [provided by Alliance of Genome Resources, Mar 2025]

LINC00466 Gene

long intergenic non-protein coding RNA 466

CPB2-AS1 Gene

CPB2 antisense RNA 1

ZNF213-AS1 Gene

ZNF213 antisense RNA 1 (head to head)

LINC00909 Gene

long intergenic non-protein coding RNA 909

TRV-AAC4-1 Gene

transfer RNA-Val (AAC) 4-1

TRR-CCT2-1 Gene

transfer RNA-Arg (CCT) 2-1

RNA5SP156 Gene

RNA, 5S ribosomal pseudogene 156

RNA5SP154 Gene

RNA, 5S ribosomal pseudogene 154

RNA5SP152 Gene

RNA, 5S ribosomal pseudogene 152

RNA5SP153 Gene

RNA, 5S ribosomal pseudogene 153

RNA5SP150 Gene

RNA, 5S ribosomal pseudogene 150

RNA5SP151 Gene

RNA, 5S ribosomal pseudogene 151

RNA5SP158 Gene

RNA, 5S ribosomal pseudogene 158

RNA5SP159 Gene

RNA, 5S ribosomal pseudogene 159

ZNF295-AS1 Gene

ZNF295 antisense RNA 1

RNF157-AS1 Gene

RNF157 antisense RNA 1

TRUND-NNN9-1 Gene

transfer RNA-undetermined (NNN) 9-1

LINC01272 Gene

long intergenic non-protein coding RNA 1272

LINC00205 Gene

long intergenic non-protein coding RNA 205

LINC00654 Gene

long intergenic non-protein coding RNA 654

LINC00656 Gene

long intergenic non-protein coding RNA 656

LINC00652 Gene

long intergenic non-protein coding RNA 652

LINC00658 Gene

long intergenic non-protein coding RNA 658

LINC00659 Gene

long intergenic non-protein coding RNA 659

SNHG10 Gene

small nucleolar RNA host gene 10

This gene is small nucleolar RNA host gene 10 and represents a non-protein coding RNA. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jan 2013]

TRR-ACG1-3 Gene

transfer RNA-Arg (ACG) 1-3

LINC01300 Gene

long intergenic non-protein coding RNA 1300

LINC01304 Gene

long intergenic non-protein coding RNA 1304

LINC01309 Gene

long intergenic non-protein coding RNA 1309

SUCLG2-AS1 Gene

SUCLG2 antisense RNA 1 (head to head)

RBMX2 Gene

RNA binding motif protein, X-linked 2

Enables RNA binding activity. Involved in mRNA splicing, via spliceosome. Located in endoplasmic reticulum; nuclear membrane; and nucleolus. Part of U2-type precatalytic spliceosome. [provided by Alliance of Genome Resources, Mar 2025]

POLR2E Gene

polymerase (RNA) II (DNA directed) polypeptide E, 25kDa

This gene encodes the fifth largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. This subunit is shared by the other two DNA-directed RNA polymerases and is present in two-fold molar excess over the other polymerase subunits. An interaction between this subunit and a hepatitis virus transactivating protein has been demonstrated, suggesting that interaction between transcriptional activators and the polymerase can occur through this subunit. A pseudogene is located on chromosome 11. Three transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Oct 2015]

POLR2D Gene

polymerase (RNA) II (DNA directed) polypeptide D

This gene encodes the fourth largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. In yeast, this polymerase subunit is associated with the polymerase under suboptimal growth conditions and may have a stress protective role. A sequence for a ribosomal pseudogene is contained within the 3' untranslated region of the transcript from this gene. [provided by RefSeq, Jul 2008]

POLR2G Gene

polymerase (RNA) II (DNA directed) polypeptide G

This gene encodes the seventh largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. The protein functions in transcription initiation, and is also thought to help stabilize transcribing polyermase molecules during elongation. [provided by RefSeq, Jan 2009]

POLR2F Gene

polymerase (RNA) II (DNA directed) polypeptide F

This gene encodes the sixth largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. In yeast, this polymerase subunit, in combination with at least two other subunits, forms a structure that stabilizes the transcribing polymerase on the DNA template. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]

POLR2A Gene

polymerase (RNA) II (DNA directed) polypeptide A, 220kDa

This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. The product of this gene contains a carboxy terminal domain composed of heptapeptide repeats that are essential for polymerase activity. These repeats contain serine and threonine residues that are phosphorylated in actively transcribing RNA polymerase. In addition, this subunit, in combination with several other polymerase subunits, forms the DNA binding domain of the polymerase, a groove in which the DNA template is transcribed into RNA. [provided by RefSeq, Jul 2008]

POLR2C Gene

polymerase (RNA) II (DNA directed) polypeptide C, 33kDa

This gene encodes the third largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. The product of this gene contains a cysteine rich region and exists as a heterodimer with another polymerase subunit, POLR2J. These two subunits form a core subassembly unit of the polymerase. A pseudogene has been identified on chromosome 21. [provided by RefSeq, Jul 2008]

POLR2B Gene

polymerase (RNA) II (DNA directed) polypeptide B, 140kDa

This gene encodes the second largest subunit of RNA polymerase II (Pol II), a DNA-dependent RNA polymerase that catalyzes the transcription of DNA into precursors of mRNA, snRNA and microRNA. This subunit and the largest subunit form opposite sides of the center cleft of Pol II. Deletion of the flap loop region of this subunit results in a decrease in the rate of transcriptional elongation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014]

POLR2M Gene

polymerase (RNA) II (DNA directed) polypeptide M

This gene encodes a subunit of a specific form of RNA polymerase II termed Pol II(G). The encoded protein may act as a negative regulator of transcriptional activation by the Mediator complex. Alternative splicing results in multiple transcript variants. There is a pseudogene for this gene on chromosome 4. Readthrough transcription between this gene and the neighboring upstream gene MYZAP (myocardial zonula adherens protein) is represented with GeneID 145781. [provided by RefSeq, Oct 2013]

POLR2L Gene

polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa

This gene encodes a subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. The product of this gene contains four conserved cysteines characteristic of an atypical zinc-binding domain. Like its counterpart in yeast, this subunit may be shared by the other two DNA-directed RNA polymerases. [provided by RefSeq, Jul 2008]

POLR2I Gene

polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa

This gene encodes a subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. This subunit, in combination with two other polymerase subunits, forms the DNA binding domain of the polymerase, a groove in which the DNA template is transcribed into RNA. The product of this gene has two zinc finger motifs with conserved cysteines and the subunit does possess zinc binding activity. [provided by RefSeq, Jul 2008]

POLR2H Gene

polymerase (RNA) II (DNA directed) polypeptide H

The three eukaryotic RNA polymerases are complex multisubunit enzymes that play a central role in the transcription of nuclear genes. This gene encodes an essential and highly conserved subunit of RNA polymerase II that is shared by the other two eukaryotic DNA-directed RNA polymerases, I and III. Alternative splicing results in multiple transcript variants of this gene. [provided by RefSeq, Jul 2013]

POLR2K Gene

polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa

This gene encodes one of the smallest subunits of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. This subunit is shared by the other two DNA-directed RNA polymerases. [provided by RefSeq, Jul 2008]

POLR2J Gene

polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa

This gene encodes a subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. The product of this gene exists as a heterodimer with another polymerase subunit; together they form a core subassembly unit of the polymerase. Two similar genes are located nearby on chromosome 7q22.1 and a pseudogene is found on chromosome 7p13. [provided by RefSeq, Jul 2008]

ILF3-AS1 Gene

ILF3 antisense RNA 1 (head to head)

PRRX2-AS1 Gene

PRRX2 antisense RNA 1

KCNJ6-AS1 Gene

KCNJ6 antisense RNA 1

LOC101929870 Gene

RNA polymerase II transcription factor SIII subunit A3-like

LINC01358 Gene

long intergenic non-protein coding RNA 1358

LINC01356 Gene

long intergenic non-protein coding RNA 1356

LINC01353 Gene

long intergenic non-protein coding RNA 1353

LINC01351 Gene

long intergenic non-protein coding RNA 1351

NREP-AS1 Gene

NREP antisense RNA 1

LOC100422556 Gene

Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) pseudogene

RNU4-5P Gene

RNA, U4 small nuclear 5, pseudogene

RNA5SP420 Gene

RNA, 5S ribosomal pseudogene 420

RNA5SP421 Gene

RNA, 5S ribosomal pseudogene 421

LINC01478 Gene

long intergenic non-protein coding RNA 1478

MEX3D Gene

mex-3 RNA binding family member D

Enables mRNA 3'-UTR AU-rich region binding activity. Predicted to be involved in mRNA destabilization and mRNA localization resulting in post-transcriptional regulation of gene expression. Located in nucleus and perinuclear region of cytoplasm. [provided by Alliance of Genome Resources, Mar 2025]

MEX3B Gene

mex-3 RNA binding family member B

This gene encodes an RNA-binding phosphoprotein that is part of the MEX3 (muscle excess 3) family of translational regulators. The encoded protein contains N-terminal nuclear export and nuclear localization signals and is exported from the cytoplasm to the nucleus. The protein binds to RNA via two KH domains and also colocalizes with MEX3A, Dcp1A decapping factor and Argonaute proteins within P (processing) bodies. [provided by RefSeq, Oct 2012]

MEX3C Gene

mex-3 RNA binding family member C

This gene encodes a member of a family of proteins with two K homology (KH) RNA-binding domains and a C-terminal RING-finger domain. The protein interacts with mRNA via the KH domains, and the protein shuttles between the nucleus and cytoplasm. Polymorphisms in this gene may contribute to hypertension. [provided by RefSeq, Oct 2009]

MEX3A Gene

mex-3 RNA binding family member A

Enables RNA binding activity. Located in P-body and cytosol. [provided by Alliance of Genome Resources, Mar 2025]

ROPN1L-AS1 Gene

ROPN1L antisense RNA 1

RNY5P1 Gene

RNA, Ro-associated Y5 pseudogene 1

RNY5P2 Gene

RNA, Ro-associated Y5 pseudogene 2

RNY5P3 Gene

RNA, Ro-associated Y5 pseudogene 3

RNY5P4 Gene

RNA, Ro-associated Y5 pseudogene 4

RNY5P5 Gene

RNA, Ro-associated Y5 pseudogene 5

RNY5P6 Gene

RNA, Ro-associated Y5 pseudogene 6

RNY5P7 Gene

RNA, Ro-associated Y5 pseudogene 7

RNY5P8 Gene

RNA, Ro-associated Y5 pseudogene 8

RNA5SP501 Gene

RNA, 5S ribosomal pseudogene 501

CRTC3-AS1 Gene

CRTC3 antisense RNA 1

TRD-GTC1-1 Gene

transfer RNA-Asp (GTC) 1-1

RNA5SP502 Gene

RNA, 5S ribosomal pseudogene 502

TRT-AGT7-1 Gene

transfer RNA-Thr (AGT) 7-1

TRT-TGT5-1 Gene

transfer RNA-Thr (TGT) 5-1

TRV-AAC5-1 Gene

transfer RNA-Val (AAC) 5-1

RNA5SP220 Gene

RNA, 5S ribosomal pseudogene 220

RNA5SP476 Gene

RNA, 5S ribosomal pseudogene 476

TRU-TCA2-1 Gene

transfer RNA-SeC (TCA) 2-1

CACNA1C-AS4 Gene

CACNA1C antisense RNA 4

SNORA14B Gene

small nucleolar RNA, H/ACA box 14B

Small nucleolar RNAs (snoRNAs) are 60-150 nt long non-coding RNAs, and include two groups: C/D box snoRNAs and H/ACA box snoRNAs. The C/D box snoRNAs are guides for the 2'-O-ribose methylation of rRNAs or snRNAs. The H/ACA box snoRNAs are guides for the isomerization of uridine residues into pseudouridine. This gene belongs to the group of the H/ACA box snoRNAs, and functions in 18S rRNA pseudouridylation at position U966. The gene duplication generates a 91% identical copy on chromosome 7. [provided by RefSeq, Oct 2008]

SNORA14A Gene

small nucleolar RNA, H/ACA box 14A

Small nucleolar RNAs (snoRNAs) are 60-150 nt long non-coding RNAs, and include two groups: C/D box snoRNAs and H/ACA box snoRNAs. The C/D box snoRNAs are guides for the 2'-O-ribose methylation of rRNAs or snRNAs. The H/ACA box snoRNAs are guides for the isomerization of uridine residues into pseudouridine. This gene belongs to the group of the H/ACA box snoRNAs, and functions in 18S rRNA pseudouridylation at position U966. The gene duplication generates a 91% identical copy on chromosome 1. [provided by RefSeq, Oct 2008]

LINC01405 Gene

long intergenic non-protein coding RNA 1405

RBM48P1 Gene

RNA binding motif protein 48 pseudogene 1

TRG-TCC4-1 Gene

transfer RNA-Gly (TCC) 4-1

TRK-TTT15-1 Gene

transfer RNA-Lys (TTT) 15-1

RBMY2XP Gene

RNA binding motif protein, Y-linked, family 2, member X pseudogene

CNTN4-AS2 Gene

CNTN4 antisense RNA 2

PAX8-AS1 Gene

PAX8 antisense RNA 1

PAXBP1-AS1 Gene

PAXBP1 antisense RNA 1

SMC2-AS1 Gene

SMC2 antisense RNA 1 (head to head)

TRE-CTC7-1 Gene

transfer RNA-Glu (CTC) 7-1

LOC646103 Gene

TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene

Predicted to enable protein heterodimerization activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. [provided by Alliance of Genome Resources, Mar 2025]

MAP3K14-AS1 Gene

MAP3K14 antisense RNA 1

RARA-AS1 Gene

RARA antisense RNA 1

RNU4-10P Gene

RNA, U4 small nuclear 10, pseudogene

VIM-AS1 Gene

VIM antisense RNA 1

MCHR2-AS1 Gene

MCHR2 antisense RNA 1

TRS-CGA1-1 Gene

transfer RNA-Ser (CGA) 1-1

SH3RF3-AS1 Gene

SH3RF3 antisense RNA 1

RTF1 Gene

Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)

This locus may represent a gene involved in regulation of transcription elongation and chromatin remodeling, based on studies of similar proteins in other organisms. The encoded protein may bind single-stranded DNA. [provided by RefSeq, Sep 2010]

RNU1-19P Gene

RNA, U1 small nuclear 19, pseudogene

RNY3P10 Gene

RNA, Ro-associated Y3 pseudogene 10

TRN-GTT1-1 Gene

transfer RNA-Asn (GTT) 1-1

RNU6-14P Gene

RNA, U6 small nuclear 14, pseudogene

RNU5F-8P Gene

RNA, U5F small nuclear 8, pseudogene

VLDLR-AS1 Gene

VLDLR antisense RNA 1

RNA5SP182 Gene

RNA, 5S ribosomal pseudogene 182

MIF-AS1 Gene

MIF antisense RNA 1

RBMY2EP Gene

RNA binding motif protein, Y-linked, family 2, member E pseudogene

FOXN3-AS1 Gene

FOXN3 antisense RNA 1

FOXN3-AS2 Gene

FOXN3 antisense RNA 2

OSTM1-AS1 Gene

OSTM1 antisense RNA 1

SNORD35A Gene

small nucleolar RNA, C/D box 35A

Predicted to be involved in RNA processing. Predicted to act upstream of or within glucose metabolic process; insulin secretion; and reactive oxygen species metabolic process. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD35B Gene

small nucleolar RNA, C/D box 35B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RBMY3AP Gene

RNA binding motif protein, Y-linked, family 3, member A pseudogene

RNA5SP189 Gene

RNA, 5S ribosomal pseudogene 189

CCDC144NL-AS1 Gene

CCDC144NL antisense RNA 1

CFAP44-AS1 Gene

CFAP44 antisense RNA 1

TRP-TGG1-1 Gene

transfer RNA-Pro (TGG) 1-1

SMC5-AS1 Gene

SMC5 antisense RNA 1 (head to head)

RNU7-45P Gene

RNA, U7 small nuclear 45 pseudogene

LRP4-AS1 Gene

LRP4 antisense RNA 1

BDNF-AS Gene

BDNF antisense RNA

LYPLAL1-AS1 Gene

LYPLAL1 antisense RNA 1 (head to head)

MTUS2-AS2 Gene

MTUS2 antisense RNA 2

LINC00959 Gene

long intergenic non-protein coding RNA 959

LINC00958 Gene

long intergenic non-protein coding RNA 958

LINC00951 Gene

long intergenic non-protein coding RNA 951

LINC00950 Gene

long intergenic non-protein coding RNA 950

LINC00957 Gene

long intergenic non-protein coding RNA 957

LINC00955 Gene

long intergenic non-protein coding RNA 955

SNRK-AS1 Gene

SNRK antisense RNA 1

RNU7-84P Gene

RNA, U7 small nuclear 84 pseudogene

LOC100128427 Gene

upstream binding transcription factor, RNA polymerase I pseudogene

TRU-TCA3-1 Gene

transfer RNA-SeC (TCA) 3-1

ADAR Gene

adenosine deaminase, RNA-specific

This gene encodes the enzyme responsible for RNA editing by site-specific deamination of adenosines. This enzyme destabilizes double-stranded RNA through conversion of adenosine to inosine. Mutations in this gene have been associated with dyschromatosis symmetrica hereditaria. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2010]

MME-AS1 Gene

MME antisense RNA 1

TRD-GTC3-1 Gene

transfer RNA-Asp (GTC) 3-1

TRD-GTC2-9 Gene

transfer RNA-Asp (GTC) 2-9

KCNC4-AS1 Gene

KCNC4 antisense RNA 1 (head to head)

TRT-TGT1-1 Gene

transfer RNA-Thr (TGT) 1-1

RNA5SP379 Gene

RNA, 5S ribosomal pseudogene 379

TMEM147-AS1 Gene

TMEM147 antisense RNA 1

CFAP58-AS1 Gene

CFAP58 antisense RNA 1 (head to head)

LINC00540 Gene

long intergenic non-protein coding RNA 540

LINC00543 Gene

long intergenic non-protein coding RNA 543

LINC00544 Gene

long intergenic non-protein coding RNA 544

LINC00545 Gene

long intergenic non-protein coding RNA 545

LINC00547 Gene

long intergenic non-protein coding RNA 547

LINC00548 Gene

long intergenic non-protein coding RNA 548

RNU6-30P Gene

RNA, U6 small nuclear 30, pseudogene

SVIL-AS1 Gene

SVIL antisense RNA 1

LINC00683 Gene

long intergenic non-protein coding RNA 683

REXO1L4P Gene

REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 4, pseudogene

RN7SL4P Gene

RNA, 7SL, cytoplasmic 4, pseudogene

BDP1 Gene

B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB

The product of this gene is a subunit of the TFIIIB transcription initiation complex, which recruits RNA polymerase III to target promoters in order to initiate transcription. The encoded protein localizes to concentrated aggregates in the nucleus, and is required for transcription from all three types of polymerase III promoters. It is phosphorylated by casein kinase II during mitosis, resulting in its release from chromatin and suppression of polymerase III transcription. [provided by RefSeq, Jul 2008]

SNORD13P1 Gene

small nucleolar RNA, C/D box 13 pseudogene 1

SNORD13P3 Gene

small nucleolar RNA, C/D box 13 pseudogene 3

SNORD13P2 Gene

small nucleolar RNA, C/D box 13 pseudogene 2

RNA5SP228 Gene

RNA, 5S ribosomal pseudogene 228

RNA5SP222 Gene

RNA, 5S ribosomal pseudogene 222

RNA5SP223 Gene

RNA, 5S ribosomal pseudogene 223

RNA5SP224 Gene

RNA, 5S ribosomal pseudogene 224

RNA5SP227 Gene

RNA, 5S ribosomal pseudogene 227

TRK-TTT16-1 Gene

transfer RNA-Lys (TTT) 16-1

FGF12-AS1 Gene

FGF12 antisense RNA 1

RNU6-78P Gene

RNA, U6 small nuclear 78, pseudogene

ADAMTSL4-AS1 Gene

ADAMTSL4 antisense RNA 1

POU6F2-AS2 Gene

POU6F2 antisense RNA 2

POU6F2-AS1 Gene

POU6F2 antisense RNA 1

PIRC73 Gene

piwi-interacting RNA cluster 73

PIRC72 Gene

piwi-interacting RNA cluster 72

CIRBP-AS1 Gene

CIRBP antisense RNA 1

PIRC77 Gene

piwi-interacting RNA cluster 77

PIRC76 Gene

piwi-interacting RNA cluster 76

PIRC75 Gene

piwi-interacting RNA cluster 75

PIRC74 Gene

piwi-interacting RNA cluster 74

ZEB1-AS1 Gene

ZEB1 antisense RNA 1

This locus produces long non-coding RNA that is transcribed from a shared bi-directional promoter with zinc finger E-box binding homeobox 1 (ZEB1). This transcript binds lysine methyltransferase 2A and promotes histone modifications that are thought to promote expression of ZEB1. Expression of this gene is correlated with tumor progression. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2017]

RAB11B-AS1 Gene

RAB11B antisense RNA 1

LOC100422645 Gene

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 pseudogene

RNU7-39P Gene

RNA, U7 small nuclear 39 pseudogene

SNORD14E Gene

small nucleolar RNA, C/D box 14E

SNORD14D Gene

small nucleolar RNA, C/D box 14D

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD14A Gene

small nucleolar RNA, C/D box 14A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD14C Gene

small nucleolar RNA, C/D box 14C

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD14B Gene

small nucleolar RNA, C/D box 14B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

CEBPB-AS1 Gene

CEBPB antisense RNA 1

SNORD49A Gene

small nucleolar RNA, C/D box 49A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

ASH1L-AS1 Gene

ASH1L antisense RNA 1

ARMC2-AS1 Gene

ARMC2 antisense RNA 1

RNU7-64P Gene

RNA, U7 small nuclear 64 pseudogene

LOC100533853 Gene

protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene

LINC00032 Gene

long intergenic non-protein coding RNA 32

PRKAR2A-AS1 Gene

PRKAR2A antisense RNA 1

C5ORF66-AS1 Gene

C5orf66 antisense RNA 1

TRM-CAT7-1 Gene

transfer RNA-Met (CAT) 7-1

LINC01011 Gene

long intergenic non-protein coding RNA 1011

LINC01010 Gene

long intergenic non-protein coding RNA 1010

SRGAP3-AS1 Gene

SRGAP3 antisense RNA 1

SRGAP3-AS3 Gene

SRGAP3 antisense RNA 3

SRGAP3-AS2 Gene

SRGAP3 antisense RNA 2

SRGAP3-AS4 Gene

SRGAP3 antisense RNA 4

ARHGEF26-AS1 Gene

ARHGEF26 antisense RNA 1

TAF8 Gene

TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa

This gene encodes one of several TATA-binding protein (TBP)-associated factors (TAFs), which are integral subunits of the general transcription factor complex TFIID. TFIID recognizes the core promoter of many genes and nucleates the assembly of a transcription preinitiation complex containing RNA polymerase II and other initiation factors. The protein encoded by this gene contains an H4-like histone fold domain, and interacts with several subunits of TFIID including TBP and the histone-fold protein TAF10. Alternatively spliced transcript variants have been described, but their biological validity has not been determined. [provided by RefSeq, Jul 2008]

RNMT Gene

RNA (guanine-7-) methyltransferase

Enables RNA binding activity and mRNA 5'-cap (guanine-N7-)-methyltransferase activity. Involved in 7-methylguanosine mRNA capping. Located in fibrillar center and nucleoplasm. Part of mRNA cap methyltransferase RNMT:RAMAC complex; mRNA capping enzyme complex; and receptor complex. [provided by Alliance of Genome Resources, Mar 2025]

LINC00940 Gene

long intergenic non-protein coding RNA 940

FOXP1-AS1 Gene

FOXP1 antisense RNA 1

SPG20-AS1 Gene

SPG20 antisense RNA 1

TRC-ACA1-1 Gene

transfer RNA-Cys (ACA) 1-1

LINC01269 Gene

long intergenic non-protein coding RNA 1269

SLC25A25-AS1 Gene

SLC25A25 antisense RNA 1

LINC01020 Gene

long intergenic non-protein coding RNA 1020

LINC01021 Gene

long intergenic non-protein coding RNA 1021

LINC01023 Gene

long intergenic non-protein coding RNA 1023

LINC01028 Gene

long intergenic non-protein coding RNA 1028

LINC01029 Gene

long intergenic non-protein coding RNA 1029

PIWIL4 Gene

piwi-like RNA-mediated gene silencing 4

PIWIL4 belongs to the Argonaute family of proteins, which function in development and maintenance of germline stem cells (Sasaki et al., 2003 [PubMed 12906857]).[supplied by OMIM, Mar 2008]

PIWIL3 Gene

piwi-like RNA-mediated gene silencing 3

This gene encodes a member of the PIWI subfamily of Argonaute family proteins. This subfamily of proteins contains a PAZ domain, found in proteins involved in RNA-mediated gene silencing, and a C-terminal Piwi domain. The encoded protein is thought to function in maintenance of germline cells. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2011]

PIWIL2 Gene

piwi-like RNA-mediated gene silencing 2

PIWIL2 belongs to the Argonaute family of proteins, which function in development and maintenance of germline stem cells (Sasaki et al., 2003 [PubMed 12906857]).[supplied by OMIM, Mar 2008]

PIWIL1 Gene

piwi-like RNA-mediated gene silencing 1

This gene encodes a member of the PIWI subfamily of Argonaute proteins, evolutionarily conserved proteins containing both PAZ and Piwi motifs that play important roles in stem cell self-renewal, RNA silencing, and translational regulation in diverse organisms. The encoded protein may play a role as an intrinsic regulator of the self-renewal capacity of germline and hematopoietic stem cells. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2010]

MRVI1-AS1 Gene

MRVI1 antisense RNA 1

LINC01262 Gene

long intergenic non-protein coding RNA 1262

RNU7-70P Gene

RNA, U7 small nuclear 70 pseudogene

RNA5-8SP7 Gene

RNA, 5.8S ribosomal pseudogene 7

FRY-AS1 Gene

FRY antisense RNA 1

HOXC-AS1 Gene

HOXC cluster antisense RNA 1

TTC39C-AS1 Gene

TTC39C antisense RNA 1

CNOT10-AS1 Gene

CNOT10 antisense RNA 1

TRY-GTA4-1 Gene

transfer RNA-Tyr (GTA) 4-1

LRP1-AS Gene

LRP1 antisense RNA

PTPRD-AS2 Gene

PTPRD antisense RNA 2 (head to head)

SNORA37 Gene

small nucleolar RNA, H/ACA box 37

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

PSMG3-AS1 Gene

PSMG3 antisense RNA 1 (head to head)

THAP7-AS1 Gene

THAP7 antisense RNA 1

PRNCR1 Gene

prostate cancer associated non-coding RNA 1

ARAP1-AS2 Gene

ARAP1 antisense RNA 2

HNRNPU-AS1 Gene

HNRNPU antisense RNA 1

TRI-AAT1-1 Gene

transfer RNA-Ile (AAT) 1-1

ZBTB20-AS4 Gene

ZBTB20 antisense RNA 4

ZBTB20-AS1 Gene

ZBTB20 antisense RNA 1

ZBTB20-AS3 Gene

ZBTB20 antisense RNA 3

ZBTB20-AS2 Gene

ZBTB20 antisense RNA 2

TRA-TGC9-1 Gene

transfer RNA-Ala (TGC) 9-1

TRE-TTC11-1 Gene

transfer RNA-Glu (TTC) 11-1

RNA5SP78 Gene

RNA, 5S ribosomal pseudogene 78

LINC01222 Gene

long intergenic non-protein coding RNA 1222

LINC01226 Gene

long intergenic non-protein coding RNA 1226

LINC01224 Gene

long intergenic non-protein coding RNA 1224

LINC01225 Gene

long intergenic non-protein coding RNA 1225

LINC01228 Gene

long intergenic non-protein coding RNA 1228

LINC01229 Gene

long intergenic non-protein coding RNA 1229

RNU7-56P Gene

RNA, U7 small nuclear 56 pseudogene

TRQ-CTG2-1 Gene

transfer RNA-Gln (CTG) 2-1

PRKAG2-AS1 Gene

PRKAG2 antisense RNA 1

LINC00266-2P Gene

long intergenic non-protein coding RNA 266-2, pseudogene

RNU5F-1 Gene

RNA, U5F small nuclear 1

Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4/U6 x U5 tri-snRNP complex and U5 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S11 Gene

RNA, 5S ribosomal 11

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S10 Gene

RNA, 5S ribosomal 10

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S13 Gene

RNA, 5S ribosomal 13

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S12 Gene

RNA, 5S ribosomal 12

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S15 Gene

RNA, 5S ribosomal 15

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S14 Gene

RNA, 5S ribosomal 14

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S17 Gene

RNA, 5S ribosomal 17

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

RNA5S16 Gene

RNA, 5S ribosomal 16

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

UBXN7-AS1 Gene

UBXN7 antisense RNA 1

RNA5SP477 Gene

RNA, 5S ribosomal pseudogene 477

ALKBH5 Gene

AlkB family member 5, RNA demethylase

Enables mRNA N6-methyladenosine dioxygenase activity and molecular condensate scaffold activity. Involved in membraneless organelle assembly; post-transcriptional regulation of gene expression; and response to hypoxia. Acts upstream of or within regulation of mRNA export from nucleus and regulation of mRNA processing. Located in Golgi apparatus; cytosol; and nuclear speck. Is active in paraspeckles. [provided by Alliance of Genome Resources, Mar 2025]

RBMY2MP Gene

RNA binding motif protein, Y-linked, family 2, member M pseudogene

TRW-CCA3-1 Gene

transfer RNA-Trp (CCA) 3-1

LINC01589 Gene

long intergenic non-protein coding RNA 1589

YTHDF3 Gene

YTH N(6)-methyladenosine RNA binding protein 3

This gene encodes a member of the YTH (YT521-B homology) domain protein family. The YTH domain is common in eukaryotes, is often found in the middle of the protein sequence, and may function in binding to RNA. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2013]

YTHDF1 Gene

YTH N(6)-methyladenosine RNA binding protein 1

Enables N6-methyladenosine-containing RNA reader activity and ribosome binding activity. Involved in mRNA destabilization; positive regulation of translational initiation; and stress granule assembly. Located in P-body and cytoplasmic stress granule. Implicated in colorectal cancer. [provided by Alliance of Genome Resources, Mar 2025]

HOXA10-AS Gene

HOXA10 antisense RNA

Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex. [provided by Alliance of Genome Resources, Mar 2025]

C2-AS1 Gene

C2 antisense RNA 1

SENCR Gene

smooth muscle and endothelial cell enriched migration/differentiation-associated long non-coding RNA

RNY4P30 Gene

RNA, Ro-associated Y4 pseudogene 30

LOC391136 Gene

RNA binding motif protein 3 pseudogene

RNA5SP38 Gene

RNA, 5S ribosomal pseudogene 38

RNA5SP39 Gene

RNA, 5S ribosomal pseudogene 39

RNA5SP36 Gene

RNA, 5S ribosomal pseudogene 36

RNA5SP37 Gene

RNA, 5S ribosomal pseudogene 37

RNA5SP34 Gene

RNA, 5S ribosomal pseudogene 34

RNA5SP35 Gene

RNA, 5S ribosomal pseudogene 35

RNA5SP32 Gene

RNA, 5S ribosomal pseudogene 32

RNA5SP33 Gene

RNA, 5S ribosomal pseudogene 33

RNA5SP30 Gene

RNA, 5S ribosomal pseudogene 30

RNA5SP31 Gene

RNA, 5S ribosomal pseudogene 31

SNORD62A Gene

small nucleolar RNA, C/D box 62A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-22 Gene

small nucleolar RNA, C/D box 114-22

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-23 Gene

small nucleolar RNA, C/D box 114-23

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RBM4B Gene

RNA binding motif protein 4B

Enables RNA binding activity. Predicted to be involved in entrainment of circadian clock by photoperiod; mRNA splicing, via spliceosome; and regulation of gene expression. Predicted to act upstream of or within positive regulation of gene expression. Located in cytosol and nucleoplasm. Part of protein-containing complex. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-21 Gene

small nucleolar RNA, C/D box 114-21

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-26 Gene

small nucleolar RNA, C/D box 114-26

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-27 Gene

small nucleolar RNA, C/D box 114-27

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-24 Gene

small nucleolar RNA, C/D box 114-24

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-25 Gene

small nucleolar RNA, C/D box 114-25

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-28 Gene

small nucleolar RNA, C/D box 114-28

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-29 Gene

small nucleolar RNA, C/D box 114-29

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SEPT4-AS1 Gene

SEPT4 antisense RNA 1

RBM41 Gene

RNA binding motif protein 41

Predicted to enable U12 snRNA binding activity and pre-mRNA intronic binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U12-type spliceosomal complex. [provided by Alliance of Genome Resources, Mar 2025]

RBM42 Gene

RNA binding motif protein 42

Enables RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within negative regulation of mRNA splicing, via spliceosome. Part of U4/U6 x U5 tri-snRNP complex. [provided by Alliance of Genome Resources, Mar 2025]

RBM43 Gene

RNA binding motif protein 43

Predicted to enable RNA binding activity. [provided by Alliance of Genome Resources, Mar 2025]

RBM44 Gene

RNA binding motif protein 44

Predicted to enable mRNA 3'-UTR binding activity and protein homodimerization activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in cytoplasm and intercellular bridge. Predicted to be part of catalytic step 2 spliceosome. [provided by Alliance of Genome Resources, Mar 2025]

RBM45 Gene

RNA binding motif protein 45

This gene encodes a member of the RNA recognition motif (RRM)-type RNA-binding family of proteins. This protein exhibits preferential binding to poly(C) RNA. Initial cloning of this gene found that the rat ortholog was dynamically expressed in the developing rat brain. This protein has been localized to inclusion bodies in the brain and spinal cord of amyotrophic lateral sclerosis and Alzheimer's patients. A pseudogene has been identified on chromosome 8. [provided by RefSeq, Feb 2015]

RBM46 Gene

RNA binding motif protein 46

Predicted to enable mRNA binding activity. Predicted to be involved in several processes, including cell cycle switching, mitotic to meiotic cell cycle; meiotic nuclear division; and spermatid differentiation. Predicted to act upstream of or within mRNA stabilization and trophectodermal cell differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

RBM47 Gene

RNA binding motif protein 47

Enables enzyme binding activity; enzyme-substrate adaptor activity; and mRNA 3'-UTR binding activity. Involved in cytidine to uridine editing; positive regulation of type I interferon-mediated signaling pathway; and regulation of mRNA metabolic process. Located in cytoplasm and nucleus. Part of apolipoprotein B mRNA editing enzyme complex. [provided by Alliance of Genome Resources, Mar 2025]

RBM48 Gene

RNA binding motif protein 48

Predicted to enable RNA binding activity. Predicted to be involved in RNA splicing and mRNA processing. Located in nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP71 Gene

RNA, 5S ribosomal pseudogene 71

TRL-CAA2-1 Gene

transfer RNA-Leu (CAA) 2-1

RNU7-15P Gene

RNA, U7 small nuclear 15 pseudogene

PROX1-AS1 Gene

PROX1 antisense RNA 1

TRK-TTT14-1 Gene

transfer RNA-Lys (TTT) 14-1

TAF5LP1 Gene

TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa pseudogene 1

NR2F1-AS1 Gene

NR2F1 antisense RNA 1

SLC6A1-AS1 Gene

SLC6A1 antisense RNA 1

RNU1-1 Gene

RNA, U1 small nuclear 1

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

RNU1-4 Gene

RNA, U1 small nuclear 4

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

TRQ-CTG3-1 Gene

transfer RNA-Gln (CTG) 3-1

TUB-AS1 Gene

TUB antisense RNA 1

LINC01017 Gene

long intergenic non-protein coding RNA 1017

TMEM108-AS1 Gene

TMEM108 antisense RNA 1

TRQ-TTG5-1 Gene

transfer RNA-Gln (TTG) 5-1

SLC9A9-AS1 Gene

SLC9A9 antisense RNA 1

SNAR-H Gene

small ILF3/NF90-associated RNA H

TRY-GTA8-1 Gene

transfer RNA-Tyr (GTA) 8-1

TRQ-CTG6-1 Gene

transfer RNA-Gln (CTG) 6-1

KIF25-AS1 Gene

KIF25 antisense RNA 1

RNU6-59P Gene

RNA, U6 small nuclear 59, pseudogene

SATB2-AS1 Gene

SATB2 antisense RNA 1

DLX2-AS1 Gene

DLX2 antisense RNA 1 (head to head)

TRN-GTT5-1 Gene

transfer RNA-Asn (GTT) 5-1

UCKL1-AS1 Gene

UCKL1 antisense RNA 1

RNU7-31P Gene

RNA, U7 small nuclear 31 pseudogene

TRA-AGC20-1 Gene

transfer RNA-Ala (AGC) 20-1

CSTF2T Gene

cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant

Enables RNA binding activity. Predicted to be involved in mRNA 3'-end processing. Located in nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

PIRC4 Gene

piwi-interacting RNA cluster 4

PIRC7 Gene

piwi-interacting RNA cluster 7

PIRC6 Gene

piwi-interacting RNA cluster 6

BRE-AS1 Gene

BRE antisense RNA 1

SNORA5A Gene

small nucleolar RNA, H/ACA box 5A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA5C Gene

small nucleolar RNA, H/ACA box 5C

Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SNORA5C, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]

SNORA5B Gene

small nucleolar RNA, H/ACA box 5B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SLC2A1-AS1 Gene

SLC2A1 antisense RNA 1

SNORA58 Gene

small nucleolar RNA, H/ACA box 58

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. Predicted to be part of RISC complex. [provided by Alliance of Genome Resources, Mar 2025]

SNORA52 Gene

small nucleolar RNA, H/ACA box 52

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA55 Gene

small nucleolar RNA, H/ACA box 55

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA54 Gene

small nucleolar RNA, H/ACA box 54

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA57 Gene

small nucleolar RNA, H/ACA box 57

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA56 Gene

small nucleolar RNA, H/ACA box 56

Biosynthesis of stable cellular RNAs such as tRNAs, rRNAs, snRNAs, and snoRNAs is aided by covalent nucleotide modification after transcription. The modified nucleotides are involved in correct RNA folding, establishment of correct RNA-RNA and RNA-protein interactions, and in the correct function of mature RNAs. The RNA encoded by this gene is thought to mediate the pseudouridylation of residue U1664 of 28S rRNA. [provided by RefSeq, Feb 2009]

ASMTL-AS1 Gene

ASMTL antisense RNA 1

This gene serves as the antisense to the acetylserotonin O-methyltransferase-like gene. Multiple non-coding transcript variants have been found for this gene. [provided by RefSeq, Oct 2011]

LOC100128673 Gene

TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene

LINC01247 Gene

long intergenic non-protein coding RNA 1247

LINC01242 Gene

long intergenic non-protein coding RNA 1242

LINC01243 Gene

long intergenic non-protein coding RNA 1243

PWRN4 Gene

Prader-Willi region non-protein coding RNA 4

RNU5B-2P Gene

RNA, U5B small nuclear 2, pseudogene

LINC01532 Gene

long intergenic non-protein coding RNA 1532

LINC01533 Gene

long intergenic non-protein coding RNA 1533

LINC01530 Gene

long intergenic non-protein coding RNA 1530

LINC01531 Gene

long intergenic non-protein coding RNA 1531

LINC01537 Gene

long intergenic non-protein coding RNA 1537

LINC01534 Gene

long intergenic non-protein coding RNA 1534

LINC01535 Gene

long intergenic non-protein coding RNA 1535

LINC01538 Gene

long intergenic non-protein coding RNA 1538

LINC01539 Gene

long intergenic non-protein coding RNA 1539

TRIM31-AS1 Gene

TRIM31 antisense RNA 1

ARPP21-AS1 Gene

ARPP21 antisense RNA 1

SAPCD1-AS1 Gene

SAPCD1 antisense RNA 1

RNU5E-3P Gene

RNA, U5E small nuclear 3, pseudogene

PDCD4-AS1 Gene

PDCD4 antisense RNA 1

FOXP4-AS1 Gene

FOXP4 antisense RNA 1

LINC00379 Gene

long intergenic non-protein coding RNA 379

LINC00371 Gene

long intergenic non-protein coding RNA 371

LINC00370 Gene

long intergenic non-protein coding RNA 370

LINC00377 Gene

long intergenic non-protein coding RNA 377

LINC00376 Gene

long intergenic non-protein coding RNA 376

LINC00375 Gene

long intergenic non-protein coding RNA 375

RNU7-50P Gene

RNA, U7 small nuclear 50 pseudogene

RBMS1 Gene

RNA binding motif, single stranded interacting protein 1

This gene encodes a member of a small family of proteins which bind single stranded DNA/RNA. These proteins are characterized by the presence of two sets of ribonucleoprotein consensus sequence (RNP-CS) that contain conserved motifs, RNP1 and RNP2, originally described in RNA binding proteins, and required for DNA binding. These proteins have been implicated in such diverse functions as DNA replication, gene transcription, cell cycle progression and apoptosis. Several transcript variants, resulting from alternative splicing and encoding different isoforms, have been described. A pseudogene for this locus is found on chromosome 12. [provided by RefSeq, Feb 2009]

RBMS3 Gene

RNA binding motif, single stranded interacting protein 3

This gene encodes an RNA-binding protein that belongs to the c-myc gene single-strand binding protein family. These proteins are characterized by the presence of two sets of ribonucleoprotein consensus sequence (RNP-CS) that contain conserved motifs, RNP1 and RNP2, originally described in RNA binding proteins, and required for DNA binding. These proteins have been implicated in such diverse functions as DNA replication, gene transcription, cell cycle progression and apoptosis. The encoded protein was isolated by virtue of its binding to an upstream element of the alpha2(I) collagen promoter. The observation that this protein localizes mostly in the cytoplasm suggests that it may be involved in a cytoplasmic function such as controlling RNA metabolism, rather than transcription. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2010]

RBMS2 Gene

RNA binding motif, single stranded interacting protein 2

The protein encoded by this gene is a member of a small family of proteins which bind single stranded DNA/RNA. These proteins are characterized by the presence of two sets of ribonucleoprotein consensus sequence (RNP-CS) that contain conserved motifs, RNP1 and RNP2, originally described in RNA binding proteins, and required for DNA binding. The RBMS proteins have been implicated in such diverse functions as DNA replication, gene transcription, cell cycle progression and apoptosis. This protein was isolated by phenotypic complementation of cdc2 and cdc13 mutants of yeast and is thought to suppress cdc2 and cdc13 mutants through the induction of translation of cdc2. [provided by RefSeq, Jul 2008]

UBTFL5 Gene

upstream binding transcription factor, RNA polymerase I-like 5 (pseudogene)

UBTFL7 Gene

upstream binding transcription factor, RNA polymerase I-like 7 (pseudogene)

UBTFL6 Gene

upstream binding transcription factor, RNA polymerase I-like 6 (pseudogene)

Predicted to enable RNA polymerase I core promoter sequence-specific DNA binding activity and RNA polymerase I general transcription initiation factor activity. Predicted to be involved in positive regulation of transcription by RNA polymerase I and transcription by RNA polymerase I. Predicted to be located in intracellular membrane-bounded organelle. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

UBTFL1 Gene

upstream binding transcription factor, RNA polymerase I-like 1

Predicted to enable RNA polymerase I core promoter sequence-specific DNA binding activity and RNA polymerase I general transcription initiation factor activity. Predicted to be involved in positive regulation of transcription by RNA polymerase I and transcription by RNA polymerase I. Predicted to act upstream of or within blastocyst growth; embryo implantation; and regulation of gene expression. Predicted to be located in cytoplasm and intracellular membrane-bounded organelle. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Mar 2025]

UBTFL3 Gene

upstream binding transcription factor, RNA polymerase I-like 3 (pseudogene)

UBTFL2 Gene

upstream binding transcription factor, RNA polymerase I-like 2 (pseudogene)

UBTFL8 Gene

upstream binding transcription factor, RNA polymerase I-like 8 (pseudogene)

RNU5A-6P Gene

RNA, U5A small nuclear 6, pseudogene

SCARNA6 Gene

small Cajal body-specific RNA 6

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LHX5-AS1 Gene

LHX5 antisense RNA 1 (head to head)

OPA1-AS1 Gene

OPA1 antisense RNA 1

RNU5E-10P Gene

RNA, U5E small nuclear 10, pseudogene

RNA5SP509 Gene

RNA, 5S ribosomal pseudogene 509

RNA5SP508 Gene

RNA, 5S ribosomal pseudogene 508

RNA5SP507 Gene

RNA, 5S ribosomal pseudogene 507

RNA5SP506 Gene

RNA, 5S ribosomal pseudogene 506

RNA5SP500 Gene

RNA, 5S ribosomal pseudogene 500

RBPMS Gene

RNA binding protein with multiple splicing

This gene encodes a member of the RNA recognition motif family of RNA-binding proteins. The RNA recognition motif is between 80-100 amino acids in length and family members contain one to four copies of the motif. The RNA recognition motif consists of two short stretches of conserved sequence, as well as a few highly conserved hydrophobic residues. The encoded protein has a single, putative RNA recognition motif in its N-terminus. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jun 2013]

BAIAP2-AS1 Gene

BAIAP2 antisense RNA 1 (head to head)

REXO1L11P Gene

REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 11, pseudogene

FBXO3-AS1 Gene

FBXO3 antisense RNA 1 (head to head)

PDZRN3-AS1 Gene

PDZRN3 antisense RNA 1

TRY-GTA9-1 Gene

transfer RNA-Tyr (GTA) 9-1

SLC25A30-AS1 Gene

SLC25A30 antisense RNA 1

LOC644303 Gene

ATP-dependent RNA helicase DDX24-like

SNORD116-19 Gene

small nucleolar RNA, C/D box 116-19

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-18 Gene

small nucleolar RNA, C/D box 116-18

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-11 Gene

small nucleolar RNA, C/D box 116-11

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-13 Gene

small nucleolar RNA, C/D box 116-13

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-15 Gene

small nucleolar RNA, C/D box 116-15

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-14 Gene

small nucleolar RNA, C/D box 116-14

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-17 Gene

small nucleolar RNA, C/D box 116-17

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD116-16 Gene

small nucleolar RNA, C/D box 116-16

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

MOV10L1 Gene

Mov10 RISC complex RNA helicase like 1

This gene is similar to a mouse gene that encodes a putative RNA helicase and shows testis-specific expression. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2009]

RNA5SP252 Gene

RNA, 5S ribosomal pseudogene 252

LINC00707 Gene

long intergenic non-protein coding RNA 707

LINC00704 Gene

long intergenic non-protein coding RNA 704

RNU7-29P Gene

RNA, U7 small nuclear 29 pseudogene

LINC00703 Gene

long intergenic non-protein coding RNA 703

SNORD59B Gene

small nucleolar RNA, C/D box 59B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD59A Gene

small nucleolar RNA, C/D box 59A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LOC100128056 Gene

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 pseudogene

LINC00174 Gene

long intergenic non-protein coding RNA 174

LINC00176 Gene

long intergenic non-protein coding RNA 176

LINC00173 Gene

long intergenic non-protein coding RNA 173

MPRIP-AS1 Gene

MPRIP antisense RNA 1

RNA5SP422 Gene

RNA, 5S ribosomal pseudogene 422

GPR50-AS1 Gene

GPR50 antisense RNA 1

HMGN3-AS1 Gene

HMGN3 antisense RNA 1

LINC00824 Gene

long intergenic non-protein coding RNA 824

SNORD72 Gene

small nucleolar RNA, C/D box 72

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD77 Gene

small nucleolar RNA, C/D box 77

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD74 Gene

small nucleolar RNA, C/D box 74

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD75 Gene

small nucleolar RNA, C/D box 75

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD78 Gene

small nucleolar RNA, C/D box 78

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD79 Gene

small nucleolar RNA, C/D box 79

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRC-GCA13-1 Gene

transfer RNA-Cys (GCA) 13-1

TRS-GCT6-1 Gene

transfer RNA-Ser (GCT) 6-1

IL12A-AS1 Gene

IL12A antisense RNA 1

TRERNA1 Gene

translation regulatory long non-coding RNA 1

RNU7-79P Gene

RNA, U7 small nuclear 79 pseudogene

LINC01441 Gene

long intergenic non-protein coding RNA 1441

RNPC3P1 Gene

RNA-binding region (RNP1, RRM) containing 3 pseudogene 1

RBMY2UP Gene

RNA binding motif protein, Y-linked, family 2, member U pseudogene

RNU6-28P Gene

RNA, U6 small nuclear 28, pseudogene

TRE-CTC1-5 Gene

transfer RNA-Glu (CTC) 1-5

OVCH1-AS1 Gene

OVCH1 antisense RNA 1

TRE-CTC1-3 Gene

transfer RNA-Glu (CTC) 1-3

ZBTB46-AS1 Gene

ZBTB46 antisense RNA 1

HIPK1-AS1 Gene

HIPK1 antisense RNA 1

RNA5SP318 Gene

RNA, 5S ribosomal pseudogene 318

RNA5SP319 Gene

RNA, 5S ribosomal pseudogene 319

RNU2-5P Gene

RNA, U2 small nuclear 5, pseudogene

DSG2-AS1 Gene

DSG2 antisense RNA 1

RN5S1@ Gene

RNA, 5S ribosomal 1q42 cluster

SNORD56 Gene

small nucleolar RNA, C/D box 56

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD113-8 Gene

small nucleolar RNA, C/D box 113-8

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD113-9 Gene

small nucleolar RNA, C/D box 113-9

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD113-4 Gene

small nucleolar RNA, C/D box 113-4

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD113-5 Gene

small nucleolar RNA, C/D box 113-5

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD113-6 Gene

small nucleolar RNA, C/D box 113-6

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD113-7 Gene

small nucleolar RNA, C/D box 113-7

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD113-2 Gene

small nucleolar RNA, C/D box 113-2

CACNA2D3-AS1 Gene

CACNA2D3 antisense RNA 1

VTRNA3-1P Gene

vault RNA 3-1, pseudogene

SNORD96B Gene

small nucleolar RNA, C/D box 96B

SNORD96A Gene

small nucleolar RNA, C/D box 96A

SGOL1-AS1 Gene

SGOL1 antisense RNA 1

RNU5F-3P Gene

RNA, U5F small nuclear 3, pseudogene

TRN-GTT15-1 Gene

transfer RNA-Asn (GTT) 15-1

LINC00706 Gene

long intergenic non-protein coding RNA 706

SNORD38B Gene

small nucleolar RNA, C/D box 38B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD38A Gene

small nucleolar RNA, C/D box 38A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LSM10 Gene

LSM10, U7 small nuclear RNA associated

Enables U7 snRNA binding activity. Involved in positive regulation of G1/S transition of mitotic cell cycle. Located in Cajal body. Part of U7 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

LSM11 Gene

LSM11, U7 small nuclear RNA associated

Enables U7 snRNA binding activity. Involved in mRNA 3'-end processing by stem-loop binding activity and cleavage; positive regulation of G1/S transition of mitotic cell cycle; and regulation of chromatin organization. Located in nuclear body. Part of U7 snRNP and telomerase holoenzyme complex. Implicated in Aicardi-Goutieres syndrome. [provided by Alliance of Genome Resources, Mar 2025]

TRUND-NNN8-1 Gene

transfer RNA-undetermined (NNN) 8-1

TBX5-AS1 Gene

TBX5 antisense RNA 1

TRD-GTC7-1 Gene

transfer RNA-Asp (GTC) 7-1

LINC01146 Gene

long intergenic non-protein coding RNA 1146

LINC01143 Gene

long intergenic non-protein coding RNA 1143

LINC01142 Gene

long intergenic non-protein coding RNA 1142

LINC01141 Gene

long intergenic non-protein coding RNA 1141

LINC01149 Gene

long intergenic non-protein coding RNA 1149

RNU7-48P Gene

RNA, U7 small nuclear 48 pseudogene

RNA5SP157 Gene

RNA, 5S ribosomal pseudogene 157

RNA5SP155 Gene

RNA, 5S ribosomal pseudogene 155

LINC00423 Gene

long intergenic non-protein coding RNA 423

LINC00421 Gene

long intergenic non-protein coding RNA 421

LINC00427 Gene

long intergenic non-protein coding RNA 427

LINC00426 Gene

long intergenic non-protein coding RNA 426

TAF13 Gene

TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes a small subunit associated with a subset of TFIID complexes. This subunit interacts with TBP and with two other small subunits of TFIID, TAF10 and TAF11. There is a pseudogene located on chromosome 6. [provided by RefSeq, Jul 2008]

TAF12 Gene

TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa

Control of transcription by RNA polymerase II involves the basal transcription machinery which is a collection of proteins. These proteins with RNA polymerase II, assemble into complexes which are modulated by transactivator proteins that bind to cis-regulatory elements located adjacent to the transcription start site. Some modulators interact directly with the basal complex, whereas others may act as bridging proteins linking transactivators to the basal transcription factors. Some of these associated factors are weakly attached while others are tightly associated with TBP in the TFIID complex. Among the latter are the TAF proteins. Different TAFs are predicted to mediate the function of distinct transcriptional activators for a variety of gene promoters and RNA polymerases. TAF12 interacts directly with TBP as well as with TAF2I. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Sep 2008]

TAF11 Gene

TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes a small subunit of TFIID that is present in all TFIID complexes and interacts with TBP. This subunit also interacts with another small subunit, TAF13, to form a heterodimer with a structure similar to the histone core structure. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2012]

TAF10 Gene

TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes one of the small subunits of TFIID that is associated with a subset of TFIID complexes. Studies with human and mammalian cells have shown that this subunit is required for transcriptional activation by the estrogen receptor, for progression through the cell cycle, and may also be required for certain cellular differentiation programs. [provided by RefSeq, Jul 2008]

TAF15 Gene

TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa

This gene encodes a member of the TET family of RNA-binding proteins. The encoded protein plays a role in RNA polymerase II gene transcription as a component of a distinct subset of multi-subunit transcription initiation factor TFIID complexes. Translocations involving this gene play a role in acute leukemia and extraskeletal myxoid chondrosarcoma, and mutations in this gene may play a role in amyotrophic lateral sclerosis. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, May 2012]

LINC00424 Gene

long intergenic non-protein coding RNA 424

TAF1C Gene

TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa

Initiation of transcription by RNA polymerase I requires the formation of a complex composed of the TATA-binding protein (TBP) and three TBP-associated factors (TAFs) specific for RNA polymerase I. This complex, known as SL1, binds to the core promoter of ribosomal RNA genes to position the polymerase properly and acts as a channel for regulatory signals. This gene encodes the largest SL1-specific TAF. Multiple alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2011]

TAF1A Gene

TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa

This gene encodes a subunit of the RNA polymerase I complex, Selectivity Factor I (SLI). The encoded protein is a TATA box-binding protein-associated factor that plays a role in the assembly of the RNA polymerase I preinitiation complex. Alternate splicing results in multiple transcript variants encoding multiple isoforms.[provided by RefSeq, Jan 2011]

TAF1L Gene

TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like

This locus is intronless, and apparently arose in the primate lineage from retrotransposition of the transcript from the multi-exon TAF1 locus on the X chromosome. The gene is expressed in male germ cells, and the product has been shown to function interchangeably with the TAF1 product. [provided by RefSeq, Aug 2015]

NAV2-AS1 Gene

NAV2 antisense RNA 1

FRMD6-AS2 Gene

FRMD6 antisense RNA 2

NR2F2-AS1 Gene

NR2F2 antisense RNA 1

TRNAK-UUU Gene

transfer RNA lysine (anticodon UUU)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TRN-GTT23-1 Gene

transfer RNA-Asn (GTT) 23-1

SNORD115-34 Gene

small nucleolar RNA, C/D box 115-34

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-35 Gene

small nucleolar RNA, C/D box 115-35

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-32 Gene

small nucleolar RNA, C/D box 115-32

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-38 Gene

small nucleolar RNA, C/D box 115-38

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD115-39 Gene

small nucleolar RNA, C/D box 115-39

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

PAF1 Gene

Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)

This gene encodes a subunit of the polymerase associated factor (PAF1) complex. The PAF1 complex interacts with RNA polymerase II and plays a role in transcription elongation as well as histone modifications including ubiquitylation and methylation. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Feb 2012]

ERICH6-AS1 Gene

ERICH6 antisense RNA 1

TRS-GCT2-1 Gene

transfer RNA-Ser (GCT) 2-1

MYT1L-AS1 Gene

MYT1L antisense RNA 1

TRQ-TTG9-1 Gene

transfer RNA-Gln (TTG) 9-1

RNA5SP103 Gene

RNA, 5S ribosomal pseudogene 103

RNA5SP186 Gene

RNA, 5S ribosomal pseudogene 186

EHHADH-AS1 Gene

EHHADH antisense RNA 1

ZIC4-AS1 Gene

ZIC4 antisense RNA 1

RNA5SP299 Gene

RNA, 5S ribosomal pseudogene 299

RNA5SP291 Gene

RNA, 5S ribosomal pseudogene 291

RNA5SP290 Gene

RNA, 5S ribosomal pseudogene 290

RNA5SP293 Gene

RNA, 5S ribosomal pseudogene 293

RNA5SP292 Gene

RNA, 5S ribosomal pseudogene 292

RNA5SP295 Gene

RNA, 5S ribosomal pseudogene 295

RNA5SP294 Gene

RNA, 5S ribosomal pseudogene 294

RNA5SP296 Gene

RNA, 5S ribosomal pseudogene 296

ID2-AS1 Gene

ID2 antisense RNA 1 (head to head)

RNA5SP129 Gene

RNA, 5S ribosomal pseudogene 129

RNA5SP128 Gene

RNA, 5S ribosomal pseudogene 128

RNA5SP127 Gene

RNA, 5S ribosomal pseudogene 127

RNA5SP126 Gene

RNA, 5S ribosomal pseudogene 126

RNA5SP125 Gene

RNA, 5S ribosomal pseudogene 125

RNA5SP124 Gene

RNA, 5S ribosomal pseudogene 124

RNA5SP123 Gene

RNA, 5S ribosomal pseudogene 123

RNA5SP122 Gene

RNA, 5S ribosomal pseudogene 122

RNA5SP121 Gene

RNA, 5S ribosomal pseudogene 121

RNA5SP120 Gene

RNA, 5S ribosomal pseudogene 120

MAFG-AS1 Gene

MAFG antisense RNA 1 (head to head)

SNHG20 Gene

small nucleolar RNA host gene 20

Predicted to be involved in several processes, including cellular response to fatty acid; macrophage activation; and tyrosine phosphorylation of STAT protein. Implicated in lung non-small cell carcinoma. [provided by Alliance of Genome Resources, Mar 2025]

SNHG21 Gene

small nucleolar RNA host gene 21

SNHG22 Gene

small nucleolar RNA host gene 22

SNHG23 Gene

small nucleolar RNA host gene 23

SNHG24 Gene

small nucleolar RNA host gene 24

NCRUPAR Gene

non-protein coding RNA, upstream of F2R/PAR1

This non-coding RNA gene has been reported to have a positive regulatory affect during embryogenesis on the adjacent coagulation factor II (thrombin) receptor gene by Madamanchi et. al (PMID:12084570). [provided by RefSeq, Aug 2012]

LHX4-AS1 Gene

LHX4 antisense RNA 1

WAC-AS1 Gene

WAC antisense RNA 1 (head to head)

CCDC148-AS1 Gene

CCDC148 antisense RNA 1

BBOX1-AS1 Gene

BBOX1 antisense RNA 1

TRE-TTC9-1 Gene

transfer RNA-Glu (TTC) 9-1

TRNAI-AAU Gene

transfer RNA isoleucine (anticodon AAU)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TTC28-AS1 Gene

TTC28 antisense RNA 1

DLGAP2-AS1 Gene

DLGAP2 antisense RNA 1

RNU6-42P Gene

RNA, U6 small nuclear 42, pseudogene

LINC00669 Gene

long intergenic non-protein coding RNA 669

LINC00668 Gene

long intergenic non-protein coding RNA 668

LINC00665 Gene

long intergenic non-protein coding RNA 665

LINC00664 Gene

long intergenic non-protein coding RNA 664

LINC00667 Gene

long intergenic non-protein coding RNA 667

LINC00661 Gene

long intergenic non-protein coding RNA 661

LINC00663 Gene

long intergenic non-protein coding RNA 663

LINC00662 Gene

long intergenic non-protein coding RNA 662

KCNAB1-AS1 Gene

KCNAB1 antisense RNA 1

KCNMA1-AS2 Gene

KCNMA1 antisense RNA 2

LINC00083 Gene

long intergenic non-protein coding RNA 83

Predicted to enable carbohydrate binding activity. [provided by Alliance of Genome Resources, Mar 2025]

KCNMA1-AS3 Gene

KCNMA1 antisense RNA 3

PARD6G-AS1 Gene

PARD6G antisense RNA 1

DANCR Gene

differentiation antagonizing non-protein coding RNA

This gene produces a long non-coding RNA that functions as a negative regulator of cell differentiation. This transcript associates with enhancer of zeste homolog 2 to repress expression of the runt related transcription factor 2 gene. Increased expression of this transcript may be associated with cancer. Alternatively spliced transcript variants have been observed. [provided by RefSeq, Dec 2016]

TRQ-TTG4-1 Gene

transfer RNA-Gln (TTG) 4-1

SNORD115@ Gene

small nucleolar RNA, C/D box 115 cluster

F11-AS1 Gene

F11 antisense RNA 1

SNORA59A Gene

small nucleolar RNA, H/ACA box 59A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP433 Gene

RNA, 5S ribosomal pseudogene 433

SNORA59B Gene

small nucleolar RNA, H/ACA box 59B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

TRC-GCA25-1 Gene

transfer RNA-Cys (GCA) 25-1

UBL7-AS1 Gene

UBL7 antisense RNA 1 (head to head)

TRP-CGG2-1 Gene

transfer RNA-Pro (CGG) 2-1

DNAJB5-AS1 Gene

DNAJB5 antisense RNA 1 (head to head)

RNA5SP380 Gene

RNA, 5S ribosomal pseudogene 380

TRS-GCT3-1 Gene

transfer RNA-Ser (GCT) 3-1

TRG-GCC3-1 Gene

transfer RNA-Gly (GCC) 3-1

LINC00657 Gene

long intergenic non-protein coding RNA 657

Predicted to enable protein sequestering activity. Predicted to be involved in several processes, including determination of adult lifespan; hair follicle development; and skeletal muscle fiber development. Predicted to be active in cytoplasm. Biomarker of lung non-small cell carcinoma. [provided by Alliance of Genome Resources, Mar 2025]

ZRANB2-AS2 Gene

ZRANB2 antisense RNA 2 (head to head)

FUT8-AS1 Gene

FUT8 antisense RNA 1

RNU7-21P Gene

RNA, U7 small nuclear 21 pseudogene

SNORD71 Gene

small nucleolar RNA, C/D box 71

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD76 Gene

small nucleolar RNA, C/D box 76

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SZT2-AS1 Gene

SZT2 antisense RNA 1

TRR-CCT6-2 Gene

transfer RNA-Arg (CCT) 6-2

WEE2-AS1 Gene

WEE2 antisense RNA 1

Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]

SGMS1-AS1 Gene

SGMS1 antisense RNA 1

Predicted to act upstream of or within positive regulation of myelination and regulation of gene expression. [provided by Alliance of Genome Resources, Mar 2025]

ELDR Gene

EGFR long non-coding downstream RNA

Predicted to act upstream of or within regulation of gene expression and response to wounding. [provided by Alliance of Genome Resources, Mar 2025]

HOXC-AS3 Gene

HOXC cluster antisense RNA 3

LINC01301 Gene

long intergenic non-protein coding RNA 1301

NAPA-AS1 Gene

NAPA antisense RNA 1

LINC01305 Gene

long intergenic non-protein coding RNA 1305

LINC01307 Gene

long intergenic non-protein coding RNA 1307

LINC01477 Gene

long intergenic non-protein coding RNA 1477

LINC01476 Gene

long intergenic non-protein coding RNA 1476

LINC01475 Gene

long intergenic non-protein coding RNA 1475

LINC01474 Gene

long intergenic non-protein coding RNA 1474

LINC01471 Gene

long intergenic non-protein coding RNA 1471

LINC01470 Gene

long intergenic non-protein coding RNA 1470

UCHL1-AS1 Gene

UCHL1 antisense RNA 1 (head to head)

SNORA11C Gene

small nucleolar RNA, H/ACA box 11C

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORA11B Gene

small nucleolar RNA, H/ACA box 11B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP416 Gene

RNA, 5S ribosomal pseudogene 416

RNA5SP415 Gene

RNA, 5S ribosomal pseudogene 415

TRF-GAA1-6 Gene

transfer RNA-Phe (GAA) 1-6

TRF-GAA1-4 Gene

transfer RNA-Phe (GAA) 1-4

TRF-GAA1-5 Gene

transfer RNA-Phe (GAA) 1-5

TRF-GAA1-2 Gene

transfer RNA-Phe (GAA) 1-2

TRF-GAA1-3 Gene

transfer RNA-Phe (GAA) 1-3

TRF-GAA1-1 Gene

transfer RNA-Phe (GAA) 1-1

LINC00434 Gene

long intergenic non-protein coding RNA 434

LINC00431 Gene

long intergenic non-protein coding RNA 431

PTCHD1-AS Gene

PTCHD1 antisense RNA (head to head)

LINC01511 Gene

long intergenic non-protein coding RNA 1511

LINC01512 Gene

long intergenic non-protein coding RNA 1512

RNA5SP418 Gene

RNA, 5S ribosomal pseudogene 418

LINC01517 Gene

long intergenic non-protein coding RNA 1517

TRE-CTC2-1 Gene

transfer RNA-Glu (CTC) 2-1

PCYT1B-AS1 Gene

PCYT1B antisense RNA 1

LOC442446 Gene

upstream binding transcription factor, RNA polymerase I pseudogene

LINC01504 Gene

long intergenic non-protein coding RNA 1504

RNU7-3P Gene

RNA, U7 small nuclear 3 pseudogene

TRNAN-GUU Gene

transfer RNA asparagine (anticodon GUU)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

SNORD6 Gene

small nucleolar RNA, C/D box 6

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD7 Gene

small nucleolar RNA, C/D box 7

This gene encodes a spliceosomal small nuclear RNA that has orthologs in S. pombe and D. melanogaster. In S. pombe, this gene is required for site-specific 2'-O-methylation of U6 snRNA at position A41. While this is not an essential gene for S. pombe growth, loss of this gene's function may result in a slight decrease in mRNA splicing efficiency. [provided by RefSeq, Oct 2008]

SNORD5 Gene

small nucleolar RNA, C/D box 5

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD2 Gene

small nucleolar RNA, C/D box 2

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD8 Gene

small nucleolar RNA, C/D box 8

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD9 Gene

small nucleolar RNA, C/D box 9

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

RNA5SP426 Gene

RNA, 5S ribosomal pseudogene 426

RNA5SP427 Gene

RNA, 5S ribosomal pseudogene 427

TRK-CTT1-2 Gene

transfer RNA-Lys (CTT) 1-2

TRK-CTT1-1 Gene

transfer RNA-Lys (CTT) 1-1

RNA5SP394 Gene

RNA, 5S ribosomal pseudogene 394

RNA5SP396 Gene

RNA, 5S ribosomal pseudogene 396

RNA5SP397 Gene

RNA, 5S ribosomal pseudogene 397

RNA5SP390 Gene

RNA, 5S ribosomal pseudogene 390

RNA5SP392 Gene

RNA, 5S ribosomal pseudogene 392

RNA5SP393 Gene

RNA, 5S ribosomal pseudogene 393

RNA5SP398 Gene

RNA, 5S ribosomal pseudogene 398

RNA5SP399 Gene

RNA, 5S ribosomal pseudogene 399

LOC100129955 Gene

RNA polymerase I-specific transcription initiation factor RRN3-like

TRC-GCA24-1 Gene

transfer RNA-Cys (GCA) 24-1

SAMSN1-AS1 Gene

SAMSN1 antisense RNA 1

RNU7-2P Gene

RNA, U7 small nuclear 2 pseudogene

RNA5SP250 Gene

RNA, 5S ribosomal pseudogene 250

RNA5SP336 Gene

RNA, 5S ribosomal pseudogene 336

CTBP1-AS Gene

CTBP1 antisense RNA

RNA5SP337 Gene

RNA, 5S ribosomal pseudogene 337

LOC391768 Gene

TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene

RNU2-7P Gene

RNA, U2 small nuclear 7, pseudogene

TRG-GCC2-6 Gene

transfer RNA-Gly (GCC) 2-6

TRG-GCC2-4 Gene

transfer RNA-Gly (GCC) 2-4

TRG-GCC2-5 Gene

transfer RNA-Gly (GCC) 2-5

RNA5SP338 Gene

RNA, 5S ribosomal pseudogene 338

HECTD2-AS1 Gene

HECTD2 antisense RNA 1

TCEAL3-AS1 Gene

TCEAL3 antisense RNA 1

LINC00238 Gene

long intergenic non-protein coding RNA 238

LINC00239 Gene

long intergenic non-protein coding RNA 239

LINC00235 Gene

long intergenic non-protein coding RNA 235

SNORD114-8 Gene

small nucleolar RNA, C/D box 114-8

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

JAKMIP2-AS1 Gene

JAKMIP2 antisense RNA 1

LINC00900 Gene

long intergenic non-protein coding RNA 900

LINC00901 Gene

long intergenic non-protein coding RNA 901

LINC00903 Gene

long intergenic non-protein coding RNA 903

LINC00904 Gene

long intergenic non-protein coding RNA 904

LINC00905 Gene

long intergenic non-protein coding RNA 905

LINC00906 Gene

long intergenic non-protein coding RNA 906

LINC00907 Gene

long intergenic non-protein coding RNA 907

LINC00908 Gene

long intergenic non-protein coding RNA 908

LINC00397 Gene

long intergenic non-protein coding RNA 397

TAF9B Gene

TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes a protein that is similar to one of the small subunits of TFIID, TBP-associated factor 9, and is also a subunit of TFIID. TAF9 and TAF9b share some functions but also have distinct roles in the transcriptional regulatory process. [provided by RefSeq, Jul 2008]

TRNAP-AGG Gene

transfer RNA proline (anticodon AGG)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

TRQ-TTG10-1 Gene

transfer RNA-Gln (TTG) 10-1

CCNT2-AS1 Gene

CCNT2 antisense RNA 1

POTEH-AS1 Gene

POTEH antisense RNA 1

RNU6-33P Gene

RNA, U6 small nuclear 33, pseudogene

LSM3 Gene

LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Sm-like proteins were identified in a variety of organisms based on sequence homology with the Sm protein family (see SNRPD2; MIM 601061). Sm-like proteins contain the Sm sequence motif, which consists of 2 regions separated by a linker of variable length that folds as a loop. The Sm-like proteins are thought to form a stable heteromer present in tri-snRNP particles, which are important for pre-mRNA splicing.[supplied by OMIM, Apr 2004]

LINC00572 Gene

long intergenic non-protein coding RNA 572

LINC00575 Gene

long intergenic non-protein coding RNA 575

LINC00574 Gene

long intergenic non-protein coding RNA 574

LINC00577 Gene

long intergenic non-protein coding RNA 577

SCAANT1 Gene

SCA7/ATXN7 antisense RNA 1

LINC01587 Gene

long intergenic non-protein coding RNA 1587

This gene is expressed in neuroblastoma; however, the function of this gene is not yet determined. [provided by RefSeq, Jul 2008]

LINC01584 Gene

long intergenic non-protein coding RNA 1584

REXO1L3P Gene

REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 3, pseudogene

TRE-CTC3-1 Gene

transfer RNA-Glu (CTC) 3-1

DGUOK-AS1 Gene

DGUOK antisense RNA 1

FAM53B-AS1 Gene

FAM53B antisense RNA 1

LINC00622 Gene

long intergenic non-protein coding RNA 622

RNA5SP211 Gene

RNA, 5S ribosomal pseudogene 211

RNA5SP210 Gene

RNA, 5S ribosomal pseudogene 210

RNA5SP213 Gene

RNA, 5S ribosomal pseudogene 213

RNA5SP217 Gene

RNA, 5S ribosomal pseudogene 217

RNA5SP219 Gene

RNA, 5S ribosomal pseudogene 219

RNA5SP218 Gene

RNA, 5S ribosomal pseudogene 218

LINC01054 Gene

long intergenic non-protein coding RNA 1054

TRE-CTC6-1 Gene

transfer RNA-Glu (CTC) 6-1

LINC01058 Gene

long intergenic non-protein coding RNA 1058

TRIM52-AS1 Gene

TRIM52 antisense RNA 1 (head to head)

DLG3-AS1 Gene

DLG3 antisense RNA 1

TRNAV-AAC Gene

transfer RNA valine (anticodon AAC)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

VCAN-AS1 Gene

VCAN antisense RNA 1

ELOVL2-AS1 Gene

ELOVL2 antisense RNA 1

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

PIRC42 Gene

piwi-interacting RNA cluster 42

PIRC43 Gene

piwi-interacting RNA cluster 43

PIRC40 Gene

piwi-interacting RNA cluster 40

PIRC41 Gene

piwi-interacting RNA cluster 41

PIRC46 Gene

piwi-interacting RNA cluster 46

PIRC47 Gene

piwi-interacting RNA cluster 47

PIRC44 Gene

piwi-interacting RNA cluster 44

PIRC45 Gene

piwi-interacting RNA cluster 45

RGMB-AS1 Gene

RGMB antisense RNA 1

ZIM2-AS1 Gene

ZIM2 antisense RNA 1

LOC100422671 Gene

cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) pseudogene

RNU7-67P Gene

RNA, U7 small nuclear 67 pseudogene

LINC00428 Gene

long intergenic non-protein coding RNA 428

LINC01354 Gene

long intergenic non-protein coding RNA 1354

LINC01355 Gene

long intergenic non-protein coding RNA 1355

LINC01350 Gene

long intergenic non-protein coding RNA 1350

MAGI1-AS1 Gene

MAGI1 antisense RNA 1

STEAP2-AS1 Gene

STEAP2 antisense RNA 1

GNA14-AS1 Gene

GNA14 antisense RNA 1

STXBP5-AS1 Gene

STXBP5 antisense RNA 1

AFAP1-AS1 Gene

AFAP1 antisense RNA 1

This gene produces a long non-coding RNA that is overexpressed in tumor cells and may promote cancer cell metastasis. [provided by RefSeq, Dec 2017]

PIRC100 Gene

piwi-interacting RNA cluster 100

TRSUP-CTA1-1 Gene

transfer RNA suppressor (CTA) 1-1

SPATA3-AS1 Gene

SPATA3 antisense RNA 1 (head to head)

TRV-CAC11-1 Gene

transfer RNA-Val (CAC) 11-1

TIA1 Gene

TIA1 cytotoxic granule-associated RNA binding protein

The product encoded by this gene is a member of a RNA-binding protein family and possesses nucleolytic activity against cytotoxic lymphocyte (CTL) target cells. It has been suggested that this protein may be involved in the induction of apoptosis as it preferentially recognizes poly(A) homopolymers and induces DNA fragmentation in CTL targets. The major granule-associated species is a 15-kDa protein that is thought to be derived from the carboxyl terminus of the 40-kDa product by proteolytic processing. Alternative splicing resulting in different isoforms has been found for this gene. [provided by RefSeq, May 2017]

PIRC107 Gene

piwi-interacting RNA cluster 107

PLSCR5-AS1 Gene

PLSCR5 antisense RNA 1

BFSP2-AS1 Gene

BFSP2 antisense RNA 1

LINC01019 Gene

long intergenic non-protein coding RNA 1019

LINC01018 Gene

long intergenic non-protein coding RNA 1018

LINC01013 Gene

long intergenic non-protein coding RNA 1013

LINC01012 Gene

long intergenic non-protein coding RNA 1012

LINC01015 Gene

long intergenic non-protein coding RNA 1015

LINC01014 Gene

long intergenic non-protein coding RNA 1014

LINC01016 Gene

long intergenic non-protein coding RNA 1016

TRS-AGA4-1 Gene

transfer RNA-Ser (AGA) 4-1

LOC100131556 Gene

zinc finger CCHC-type and RNA binding motif 1 pseudogene

CPEB1-AS1 Gene

CPEB1 antisense RNA 1

CTDSPL2 Gene

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2

Enables RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of BMP signaling pathway; positive regulation of protein export from nucleus; and protein dephosphorylation. Located in nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]

VTRNA1-3 Gene

vault RNA 1-3

VTRNA1-2 Gene

vault RNA 1-2

VTRNA1-1 Gene

vault RNA 1-1

Vaults are large cytoplasmic ribonucleoproteins of about 13 MD. They are composed of a major vault protein, MVP (MIM 605088), 2 minor vault proteins, TEP1 (MIM 601686) and PARP4 (MIM 607519), and a nontranslated RNA component, VTRNA1-1 (Kickhoefer et al., 1999 [PubMed 10551828]).[supplied by OMIM, Mar 2009]

LINC00888 Gene

long intergenic non-protein coding RNA 888

LINC01162 Gene

long intergenic non-protein coding RNA 1162

PABPC1L2B-AS1 Gene

PABPC1L2B antisense RNA 1 (head to head)

LINC00919 Gene

long intergenic non-protein coding RNA 919

LINC00914 Gene

long intergenic non-protein coding RNA 914

HYI-AS1 Gene

HYI antisense RNA 1

SNORD103B Gene

small nucleolar RNA, C/D box 103B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD103A Gene

small nucleolar RNA, C/D box 103A

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

ZCRB1 Gene

zinc finger CCHC-type and RNA binding motif 1

Pre-mRNA splicing is catalyzed by the spliceosome. U12-type spliceosome binds U12-type pre-mRNAs and recognizes the 5' splice site and branch-point sequence. U11 and U12 snRNPs are components of U12-type spliceosome and function as a molecular bridge connecting both ends of the intron. The protein encoded by this gene contains a RNA recognition motif. It was identified as one of the protein components of U11/U12 snRNPs. This protein and many other U11/U12 snRNP proteins are highly conserved in organisms known to contain U12-type introns. These proteins have been shown to be essential for cell viability, suggesting the key roles in U12-type splicing. [provided by RefSeq, Jul 2008]

TRE-TTC8-1 Gene

transfer RNA-Glu (TTC) 8-1

IL10RB-AS1 Gene

IL10RB antisense RNA 1 (head to head)

PACERR Gene

PTGS2 antisense NFKB1 complex-mediated expression regulator RNA

This gene represents transcription of a long non-coding RNA produced in antisense to the prostaglandin-endoperoxide synthase 2 (PTGS2) gene. This transcript interacts with NF-kB transcriptional regulators to promote expression of PTGS2. [provided by RefSeq, Feb 2015]

PAUPAR Gene

PAX6 upstream antisense RNA

This gene is thought to produce a functional long non-coding RNA. Knockdown of this transcript results in genome-wide changes in gene expression, particularly of cell cyle genes, indicating a role in regulating differentiation. This transcript may bind to the promoter region of target genes and may also interact with the transcription factor Pax6 (paired box 6). [provided by RefSeq, Feb 2015]

EDRF1-AS1 Gene

EDRF1 antisense RNA 1

LINC00705 Gene

long intergenic non-protein coding RNA 705

LINC00700 Gene

long intergenic non-protein coding RNA 700

LINC00701 Gene

long intergenic non-protein coding RNA 701

TRC-GCA3-1 Gene

transfer RNA-Cys (GCA) 3-1

RASSF8-AS1 Gene

RASSF8 atnisense RNA 1

FAM181A-AS1 Gene

FAM181A antisense RNA 1

CYP51A1-AS1 Gene

CYP51A1 antisense RNA 1

FAM167A-AS1 Gene

FAM167A antisense RNA 1

TRNAS-GCU Gene

transfer RNA serine (anticodon GCU)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

RBMS2P1 Gene

RNA binding motif, single stranded interacting protein 2 pseudogene 1

LZTS1-AS1 Gene

LZTS1 antisense RNA 1

Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. [provided by Alliance of Genome Resources, Mar 2025]

CDC37L1-AS1 Gene

CDC37L1 antisense RNA 1 (head to head)

LINC01359 Gene

long intergenic non-protein coding RNA 1359

TRNAW-CCA Gene

transfer RNA tryptophan (anticodon CCA)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

PSMA3-AS1 Gene

PSMA3 antisense RNA 1

LINC01352 Gene

long intergenic non-protein coding RNA 1352

PIRC82 Gene

piwi-interacting RNA cluster 82

HOTTIP Gene

HOXA distal transcript antisense RNA

This gene produces a long RNA in antisense to the HOXA gene cluster. This transcript may regulate expression of HOXA genes in cis. This gene is upregulated in tumors and is implicated in the promotion of cell proliferation. [provided by RefSeq, Dec 2017]

TRX-CAT1-8 Gene

transfer RNA-iMet (CAT) 1-8

TRX-CAT1-3 Gene

transfer RNA-iMet (CAT) 1-3

TRX-CAT1-2 Gene

transfer RNA-iMet (CAT) 1-2

TRX-CAT1-1 Gene

transfer RNA-iMet (CAT) 1-1

TRX-CAT1-7 Gene

transfer RNA-iMet (CAT) 1-7

TRX-CAT1-6 Gene

transfer RNA-iMet (CAT) 1-6

TRX-CAT1-5 Gene

transfer RNA-iMet (CAT) 1-5

TRX-CAT1-4 Gene

transfer RNA-iMet (CAT) 1-4

KCNMB2-AS1 Gene

KCNMB2 antisense RNA 1

SNORD114-9 Gene

small nucleolar RNA, C/D box 114-9

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

PANDAR Gene

promoter of CDKN1A antisense DNA damage activated RNA

This gene produces a non-coding RNA that is thought to regulate the response to DNA damage. This gene is induced by tumor protein p53 and interacts with and modulates the activity of a transcription factor that induce pro-apoptotic genes. Deregulation of this gene is associated with cancer progression. [provided by RefSeq, Dec 2017]

ARAP1-AS1 Gene

ARAP1 antisense RNA 1

SERTAD4-AS1 Gene

SERTAD4 antisense RNA 1

PRKRIRP10 Gene

protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 10

TRNAL-AAG Gene

transfer RNA leucine (anticodon AAG)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

RBMY2BP Gene

RNA binding motif protein, Y-linked, family 2, member B pseudogene

SNORD114-3 Gene

small nucleolar RNA, C/D box 114-3

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-2 Gene

small nucleolar RNA, C/D box 114-2

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-7 Gene

small nucleolar RNA, C/D box 114-7

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

GAS5-AS1 Gene

GAS5 antisense RNA 1

C10ORF71-AS1 Gene

C10orf71 antisense RNA 1

PLCE1-AS2 Gene

PLCE1 antisense RNA 2

PLCE1-AS1 Gene

PLCE1 antisense RNA 1

SYNE1-AS1 Gene

SYNE1 antisense RNA 1

LINC01586 Gene

long intergenic non-protein coding RNA 1586

TAB3-AS2 Gene

TAB3 antisense RNA 2

ZNF630-AS1 Gene

ZNF630 antisense RNA 1

SNORD114-19 Gene

small nucleolar RNA, C/D box 114-19

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-18 Gene

small nucleolar RNA, C/D box 114-18

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-13 Gene

small nucleolar RNA, C/D box 114-13

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-12 Gene

small nucleolar RNA, C/D box 114-12

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-11 Gene

small nucleolar RNA, C/D box 114-11

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-10 Gene

small nucleolar RNA, C/D box 114-10

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-17 Gene

small nucleolar RNA, C/D box 114-17

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-16 Gene

small nucleolar RNA, C/D box 114-16

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

SNORD114-15 Gene

small nucleolar RNA, C/D box 114-15

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC00989 Gene

long intergenic non-protein coding RNA 989

LINC00982 Gene

long intergenic non-protein coding RNA 982

LINC00987 Gene

long intergenic non-protein coding RNA 987

LHFPL3-AS1 Gene

LHFPL3 antisense RNA 1

LHFPL3-AS2 Gene

LHFPL3 antisense RNA 2

ABHD11-AS1 Gene

ABHD11 antisense RNA 1 (tail to tail)

PIRC106 Gene

piwi-interacting RNA cluster 106

PIRC104 Gene

piwi-interacting RNA cluster 104

PIRC102 Gene

piwi-interacting RNA cluster 102

PIRC103 Gene

piwi-interacting RNA cluster 103

PIRC101 Gene

piwi-interacting RNA cluster 101

PIRC108 Gene

piwi-interacting RNA cluster 108

PIRC109 Gene

piwi-interacting RNA cluster 109

TRNAT-UGU Gene

transfer RNA threonine (anticodon UGU)

This record serves to anchor the annotations of this class of tRNAs at multiple locations on the human genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).

PCDH9-AS3 Gene

PCDH9 antisense RNA 3

RNU7-83P Gene

RNA, U7 small nuclear 83 pseudogene

SNAR-A13 Gene

small ILF3/NF90-associated RNA A13

Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

RNU7-16P Gene

RNA, U7 small nuclear 16 pseudogene

LOC102725046 Gene

RNA polymerase II transcription factor SIII subunit A3-like

CEP83-AS1 Gene

CEP83 antisense RNA 1 (head to head)

MKRN3-AS1 Gene

MKRN3 antisense RNA 1

PUM3 Gene

pumilio RNA binding family member 3

Enables RNA binding activity. Predicted to be involved in regulation of translation. Located in chromosome; endoplasmic reticulum; and nuclear lumen. [provided by Alliance of Genome Resources, Mar 2025]

POLR1G Gene

RNA polymerase I subunit G

Enables RNA binding activity. Involved in transcription initiation at RNA polymerase I promoter. Located in cytosol; mitochondrion; and nuclear lumen. Part of RNA polymerase I complex. Implicated in multiple myeloma. [provided by Alliance of Genome Resources, Mar 2025]

MTREX Gene

Mtr4 exosome RNA helicase

Enables ATP binding activity and RNA helicase activity. Involved in DNA damage response; RNA catabolic process; and maturation of 5.8S rRNA. Located in nuclear exosome (RNase complex) and nucleoplasm. Part of TRAMP complex and catalytic step 2 spliceosome. Biomarker of amyotrophic lateral sclerosis. [provided by Alliance of Genome Resources, Mar 2025]

RO60 Gene

Ro60, Y RNA binding protein

Enables RNA binding activity. Involved in cellular response to interferon-alpha and regulation of gene expression. Located in cytosol and nuclear body. Part of ribonucleoprotein complex. [provided by Alliance of Genome Resources, Mar 2025]

POLR1F Gene

RNA polymerase I subunit F

Predicted to be involved in transcription elongation by RNA polymerase I. Predicted to act upstream of or within cellular response to leukemia inhibitory factor. Part of RNA polymerase I complex. [provided by Alliance of Genome Resources, Mar 2025]

RTRAF Gene

RNA transcription, translation and transport factor

Enables RNA binding activity; RNA polymerase II complex binding activity; and identical protein binding activity. Involved in negative regulation of protein kinase activity; positive regulation of transcription by RNA polymerase II; and tRNA splicing, via endonucleolytic cleavage and ligation. Located in microtubule cytoskeleton; nucleoplasm; and perinuclear region of cytoplasm. Part of tRNA-splicing ligase complex. [provided by Alliance of Genome Resources, Mar 2025]

RAMAC Gene

RNA guanine-7 methyltransferase activating subunit

Enables RNA binding activity and enzyme activator activity. Involved in 7-methylguanosine mRNA capping. Located in nucleus. Part of mRNA cap methyltransferase RNMT:RAMAC complex and mRNA capping enzyme complex. [provided by Alliance of Genome Resources, Mar 2025]

TRIR Gene

telomerase RNA component interacting RNase

Enables 3'-5' exonuclease activity and 5'-3' exonuclease activity. Involved in rRNA catabolic process. [provided by Alliance of Genome Resources, Mar 2025]

POLR1H Gene

RNA polymerase I subunit H

This gene encodes a DNA-directed RNA polymerase I subunit. The encoded protein contains two potential zinc-binding motifs and may play a role in regulation of cell proliferation. The encoded protein may be involved in cancer and human immunodeficiency virus progression. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

REXO5 Gene

RNA exonuclease 5

Predicted to enable exonuclease activity. Predicted to be involved in rRNA 3'-end processing. Located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

BMNCR Gene

bone marrow associated non-coding RNA

SNHG32 Gene

small nucleolar RNA host gene 32

Predicted to enable double-stranded RNA binding activity. [provided by Alliance of Genome Resources, Mar 2025]

RIGI Gene

RNA sensor RIG-I

DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases which are implicated in a number of cellular processes involving RNA binding and alteration of RNA secondary structure. This gene encodes a protein containing RNA helicase-DEAD box protein motifs and a caspase recruitment domain (CARD). It is involved in viral double-stranded (ds) RNA recognition and the regulation of the antiviral innate immune response. Mutations in this gene are associated with Singleton-Merten syndrome 2. [provided by RefSeq, Aug 2020]

LINC02618 Gene

long intergenic non-protein coding RNA 2618

LINC02249 Gene

long intergenic non-protein coding RNA 2249

PKD1L1-AS1 Gene

PKD1L1 antisense RNA 1

Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Mar 2025]

LINC01963 Gene

long intergenic non-protein coding RNA 1963

YWHAH-AS1 Gene

YWHAH antisense RNA 1

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

RAMACL Gene

RNA guanine-7 methyltransferase activating subunit like

Predicted to enable RNA binding activity. Predicted to be involved in RNA 5'-cap (guanine-N7)-methylation. Predicted to be located in nucleus. Predicted to be part of mRNA capping enzyme complex. [provided by Alliance of Genome Resources, Mar 2025]

PSPC1-AS2 Gene

PSPC1 antisense RNA 2

SPACA6-AS1 Gene

SPACA6 antisense RNA 1

Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex. [provided by Alliance of Genome Resources, Mar 2025]

LIX1L-AS1 Gene

LIX1L antisense RNA 1

SLC44A3-AS1 Gene

SLC44A3 antisense RNA 1

RN7SL689P Gene

RNA, 7SL, cytoplasmic 689, pseudogene

LINC01833 Gene

long intergenic non-protein coding RNA 1833

Predicted to be involved in regulation of gene expression. [provided by Alliance of Genome Resources, Mar 2025]

LINC01806 Gene

long intergenic non-protein coding RNA 1806

LINC01788 Gene

long intergenic non-protein coding RNA 1788

LINC01843 Gene

long intergenic non-protein coding RNA 1843

RN7SL145P Gene

RNA, 7SL, cytoplasmic 145, pseudogene

ATP2B1-AS1 Gene

ATP2B1 antisense RNA 1

LINC03040 Gene

long intergenic non-protein coding RNA 3040

PRKCZ-AS1 Gene

PRKCZ antisense RNA 1

LINC01719 Gene

long intergenic non-protein coding RNA 1719

PKP4-AS1 Gene

PKP4 antisense RNA 1

CCDC13-AS2 Gene

CCDC13 antisense RNA 2

LIX1-AS1 Gene

LIX1 and RIOK2 antisense RNA 1

TSPOAP1-AS1 Gene

TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1

OBSCN-AS1 Gene

OBSCN antisense RNA 1

LINC01772 Gene

long intergenic non-protein coding RNA 1772

RN7SL834P Gene

RNA, 7SL, cytoplasmic 834, pseudogene

TBC1D8-AS1 Gene

TBC1D8 antisense RNA 1

H1-10-AS1 Gene

H1-10 antisense RNA 1

SNHG25 Gene

small nucleolar RNA host gene 25

LINC02035 Gene

long intergenic non-protein coding RNA 2035

NRAD1 Gene

non-coding RNA in the aldehyde dehydrogenase 1A pathway

PAK6-AS1 Gene

PAK6 antisense RNA 1

PSMD6-AS1 Gene

PSMD6 antisense RNA 1

PITX1-AS1 Gene

PITX1 antisense RNA 1

LINC01781 Gene

long intergenic non-protein coding RNA 1781

LINC02044 Gene

long intergenic non-protein coding RNA 2044

LINC01852 Gene

long intergenic non-protein coding RNA 1852

IRF1-AS1 Gene

IRF1 antisense RNA 1

LINC01914 Gene

long intergenic non-protein coding RNA 1914

PRR29-AS1 Gene

PRR29 antisense RNA 1

LINC02102 Gene

long intergenic non-protein coding RNA 2102

DUBR Gene

DPPA2 upstream binding RNA

Predicted to act upstream of or within several processes, including generation of neurons; negative regulation of macromolecule biosynthetic process; and protein stabilization. Predicted to be active in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

LINC01933 Gene

long intergenic non-protein coding RNA 1933

LINC02904 Gene

long intergenic non-protein coding RNA 2904

SPART-AS1 Gene

SPART antisense RNA 1

MELTF-AS1 Gene

MELTF antisense RNA 1

CYTOR Gene

cytoskeleton regulator RNA

This gene produces a long non-coding RNA that is overexpressed in cancer cells and promotes cell proliferation and epithelial-mesenchymal transition. This RNA may bind enhancer of zeste homolog 2 and participate in the transcriptional silencing of tumor suppressor genes. It may act as a sponge for microRNAs. Alternatively spliced variants have been observed. [provided by RefSeq, Dec 2017]

LINC02910 Gene

long intergenic non-protein coding RNA 2910

KRT10-AS1 Gene

KRT10 antisense RNA 1

Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]

PRANCR Gene

progenitor renewal associated non-coding RNA

CCDC28A-AS1 Gene

CCDC28A antisense RNA 1

ZFHX2-AS1 Gene

ZFHX2 antisense RNA 1

LINC01814 Gene

long intergenic non-protein coding RNA 1814

LINC02908 Gene

long intergenic non-protein coding RNA 2908

LINC01829 Gene

long intergenic non-protein coding RNA 1829

DIP2C-AS1 Gene

DIP2C antisense RNA 1

MAP3K20-AS1 Gene

MAP3K20 antisense RNA 1

LINC00680 Gene

long intergenic non-protein coding RNA 680

LINC02019 Gene

long intergenic non-protein coding RNA 2019

LINC02094 Gene

long intergenic non-protein coding RNA 2094

LINC02147 Gene

long intergenic non-protein coding RNA 2147

LINC02012 Gene

long intergenic non-protein coding RNA 2012

LINC01896 Gene

long intergenic non-protein coding RNA 1896

RN7SL832P Gene

RNA, 7SL, cytoplasmic 832, pseudogene

DCST1-AS1 Gene

DCST1 antisense RNA 1

CCDC18-AS1 Gene

CCDC18 antisense RNA 1

LINC02185 Gene

long intergenic non-protein coding RNA 2185

LINC01828 Gene

long intergenic non-protein coding RNA 1828

LINC01619 Gene

long intergenic non-protein coding RNA 1619

MCCC1-AS1 Gene

MCCC1 antisense RNA 1

LINC01679 Gene

long intergenic non-protein coding RNA 1679

RN7SL268P Gene

RNA, 7SL, cytoplasmic 268, pseudogene

SNHG28 Gene

small nucleolar RNA host gene 28

Enables RNA binding activity. [provided by Alliance of Genome Resources, Mar 2025]

LINC02208 Gene

long intergenic non-protein coding RNA 2208

CARMN Gene

cardiac mesoderm enhancer-associated non-coding RNA

Predicted to be involved in regulation of gene expression. Predicted to be part of RISC complex. Biomarker of atherosclerosis. [provided by Alliance of Genome Resources, Mar 2025]

LINC02210 Gene

long intergenic non-protein coding RNA 2210

LINC03011 Gene

long intergenic non-protein coding RNA 3011

THBS4-AS1 Gene

THBS4 antisense RNA 1

LINC01702 Gene

long intergenic non-protein coding RNA 1702

LINC02037 Gene

long intergenic non-protein coding RNA 2037

LINC02197 Gene

long intergenic non-protein coding RNA 2197

ZNF22-AS1 Gene

ZNF22 antisense RNA 1

Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Mar 2025]

LINC01595 Gene

long intergenic non-protein coding RNA 1595

Implicated in prostate cancer. [provided by Alliance of Genome Resources, Mar 2025]

ERCC6L2-AS1 Gene

ERCC6L2 antisense RNA 1

SNHG29 Gene

small nucleolar RNA host gene 29

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

ELN-AS1 Gene

ELN antisense RNA 1

LINC02898 Gene

long intergenic non-protein coding RNA 2898

LINC02716 Gene

long intergenic non-protein coding RNA 2716

LINC02116 Gene

long intergenic non-protein coding RNA 2116

LINC01713 Gene

long intergenic non-protein coding RNA 1713

LINC02174 Gene

long intergenic non-protein coding RNA 2174

LINC02052 Gene

long intergenic non-protein coding RNA 2052

KCNJ5-AS1 Gene

KCNJ5 antisense RNA 1

Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Mar 2025]

LINC00449 Gene

long intergenic non-protein coding RNA 449

POC1B-AS1 Gene

POC1B antisense RNA 1

LINC02084 Gene

long intergenic non-protein coding RNA 2084

LINC01980 Gene

long intergenic non-protein coding RNA 1980

LINC01876 Gene

long intergenic non-protein coding RNA 1876

LINC02167 Gene

long intergenic non-protein coding RNA 2167

LINC02212 Gene

long intergenic non-protein coding RNA 2212

LINC02145 Gene

long intergenic non-protein coding RNA 2145

LINC02905 Gene

long intergenic non-protein coding RNA 2905

PGR-AS1 Gene

PGR antisense RNA 1

KCNK15-AS1 Gene

KCNK15 and WISP2 antisense RNA 1

LINC02693 Gene

long intergenic non-protein coding RNA 2693

LINC01978 Gene

long intergenic non-protein coding RNA 1978

LINC01979 Gene

long intergenic non-protein coding RNA 1979

LINC02015 Gene

long intergenic non-protein coding RNA 2015

LINC01625 Gene

long intergenic non-protein coding RNA 1625

LINC02202 Gene

long intergenic non-protein coding RNA 2202

HLA-DQB1-AS1 Gene

HLA-DQB1 antisense RNA 1

IKBKE-AS1 Gene

IKBKE antisense RNA 1

ZNF407-AS1 Gene

ZNF407 antisense RNA 1

CHASERR Gene

CHD2 adjacent suppressive regulatory RNA

Predicted to be involved in several processes, including adipose tissue development; regulation of gene expression; and thymus development. Predicted to be active in chromatin and nucleus. [provided by Alliance of Genome Resources, Mar 2025]

SNHG30 Gene

small nucleolar RNA host gene 30

LINC01786 Gene

long intergenic non-protein coding RNA 1786

ELF3-AS1 Gene

ELF3 antisense RNA 1

LINC01714 Gene

long intergenic non-protein coding RNA 1714

LINC02028 Gene

long intergenic non-protein coding RNA 2028

STPG3-AS1 Gene

STPG3 antisense RNA 1

GNAO1-AS1 Gene

GNAO1 antisense RNA 1

HISLA Gene

HIF1A stabilizing long noncoding RNA

LINC01836 Gene

long intergenic non-protein coding RNA 1836

LINC01977 Gene

long intergenic non-protein coding RNA 1977

LINC01907 Gene

long intergenic non-protein coding RNA 1907

LINC01748 Gene

long intergenic non-protein coding RNA 1748

ARLNC1 Gene

androgen receptor regulated long noncoding RNA 1

LINC01754 Gene

long intergenic non-protein coding RNA 1754

SGO1-AS1 Gene

SGO1 antisense RNA 1

LINC01770 Gene

long intergenic non-protein coding RNA 1770

ELOA-AS1 Gene

ELOA antisense RNA 1

MINCR Gene

MYC-induced long non-coding RNA

LINC02086 Gene

long intergenic non-protein coding RNA 2086

LINC02193 Gene

long intergenic non-protein coding RNA 2193

LINC01819 Gene

long intergenic non-protein coding RNA 1819

LINC02018 Gene

long intergenic non-protein coding RNA 2018

LINC01869 Gene

long intergenic non-protein coding RNA 1869

MALINC1 Gene

mitosis associated long intergenic non-coding RNA 1

LINC02106 Gene

long intergenic non-protein coding RNA 2106

LINC02076 Gene

long intergenic non-protein coding RNA 2076

LINC02021 Gene

long intergenic non-protein coding RNA 2021

LINC01915 Gene

long intergenic non-protein coding RNA 1915

LINC01881 Gene

long intergenic non-protein coding RNA 1881

LINC01801 Gene

long intergenic non-protein coding RNA 1801

LINC01750 Gene

long intergenic non-protein coding RNA 1750

LINC02175 Gene

long intergenic non-protein coding RNA 2175

LINC02188 Gene

long intergenic non-protein coding RNA 2188

LINC02913 Gene

long intergenic non-protein coding RNA 2913

LINC02897 Gene

long intergenic non-protein coding RNA 2897

LINC02875 Gene

long intergenic non-protein coding RNA 2875

LINC01238 Gene

long intergenic non-protein coding RNA 1238

NORAD Gene

non-coding RNA activated by DNA damage

Predicted to enable protein sequestering activity. Predicted to be involved in several processes, including determination of adult lifespan; hair follicle development; and skeletal muscle fiber development. Predicted to be active in cytoplasm. Biomarker of lung non-small cell carcinoma. [provided by Alliance of Genome Resources, Mar 2025]

LINC01943 Gene

long intergenic non-protein coding RNA 1943

LINC02881 Gene

long intergenic non-protein coding RNA 2881

DOCK8-AS1 Gene

DOCK8 antisense RNA 1

RN7SL244P Gene

RNA, 7SL, cytoplasmic 244, pseudogene

LINC01345 Gene

long intergenic non-protein coding RNA 1345

LINC02692 Gene

long intergenic non-protein coding RNA 2692

LINC02107 Gene

long intergenic non-protein coding RNA 2107

LINC01874 Gene

long intergenic non-protein coding RNA 1874

LINC01707 Gene

long intergenic non-protein coding RNA 1707

LINC01697 Gene

long intergenic non-protein coding RNA 1697

LINC01684 Gene

long intergenic non-protein coding RNA 1684

LINC01816 Gene

long intergenic non-protein coding RNA 1816

LINC01626 Gene

long intergenic non-protein coding RNA 1626

LINC01623 Gene

long intergenic non-protein coding RNA 1623

LINC01612 Gene

long intergenic non-protein coding RNA 1612

LINC01643 Gene

long intergenic non-protein coding RNA 1643

LINC01647 Gene

long intergenic non-protein coding RNA 1647

LINC01655 Gene

long intergenic non-protein coding RNA 1655

LINC01667 Gene

long intergenic non-protein coding RNA 1667

LINC01749 Gene

long intergenic non-protein coding RNA 1749

LINC01747 Gene

long intergenic non-protein coding RNA 1747

LINC01744 Gene

long intergenic non-protein coding RNA 1744

LINC01743 Gene

long intergenic non-protein coding RNA 1743

LINC01739 Gene

long intergenic non-protein coding RNA 1739

LINC01728 Gene

long intergenic non-protein coding RNA 1728

LINC01723 Gene

long intergenic non-protein coding RNA 1723

LINC01718 Gene

long intergenic non-protein coding RNA 1718

LINC01712 Gene

long intergenic non-protein coding RNA 1712

LINC01704 Gene

long intergenic non-protein coding RNA 1704

LINC01677 Gene

long intergenic non-protein coding RNA 1677

LINC01676 Gene

long intergenic non-protein coding RNA 1676

LINC01673 Gene

long intergenic non-protein coding RNA 1673

LINC01672 Gene

long intergenic non-protein coding RNA 1672

LINC01374 Gene

long intergenic non-protein coding RNA 1374

LINC01297 Gene

long intergenic non-protein coding RNA 1297

LINC01755 Gene

long intergenic non-protein coding RNA 1755

LINC01760 Gene

long intergenic non-protein coding RNA 1760

LINC01763 Gene

long intergenic non-protein coding RNA 1763

LINC01764 Gene

long intergenic non-protein coding RNA 1764

LINC02046 Gene

long intergenic non-protein coding RNA 2046

LINC02045 Gene

long intergenic non-protein coding RNA 2045

LINC02040 Gene

long intergenic non-protein coding RNA 2040

LINC02039 Gene

long intergenic non-protein coding RNA 2039

LINC02034 Gene

long intergenic non-protein coding RNA 2034

LINC02032 Gene

long intergenic non-protein coding RNA 2032

LINC02025 Gene

long intergenic non-protein coding RNA 2025

LINC02022 Gene

long intergenic non-protein coding RNA 2022

LINC02020 Gene

long intergenic non-protein coding RNA 2020

LINC02013 Gene

long intergenic non-protein coding RNA 2013

LINC01999 Gene

long intergenic non-protein coding RNA 1999

LINC01995 Gene

long intergenic non-protein coding RNA 1995

LINC01988 Gene

long intergenic non-protein coding RNA 1988

LINC01986 Gene

long intergenic non-protein coding RNA 1986

LINC02056 Gene

long intergenic non-protein coding RNA 2056

LINC02064 Gene

long intergenic non-protein coding RNA 2064

LINC02166 Gene

long intergenic non-protein coding RNA 2166

LINC02165 Gene

long intergenic non-protein coding RNA 2165

LINC02156 Gene

long intergenic non-protein coding RNA 2156

LINC02152 Gene

long intergenic non-protein coding RNA 2152

LINC02117 Gene

long intergenic non-protein coding RNA 2117

LINC02114 Gene

long intergenic non-protein coding RNA 2114

LINC02113 Gene

long intergenic non-protein coding RNA 2113

LINC02110 Gene

long intergenic non-protein coding RNA 2110

LINC02103 Gene

long intergenic non-protein coding RNA 2103

LINC02096 Gene

long intergenic non-protein coding RNA 2096

LINC02089 Gene

long intergenic non-protein coding RNA 2089

LINC02087 Gene

long intergenic non-protein coding RNA 2087

LINC02079 Gene

long intergenic non-protein coding RNA 2079

LINC02072 Gene

long intergenic non-protein coding RNA 2072

LINC02069 Gene

long intergenic non-protein coding RNA 2069

LINC02059 Gene

long intergenic non-protein coding RNA 2059

LINC01976 Gene

long intergenic non-protein coding RNA 1976

LINC01944 Gene

long intergenic non-protein coding RNA 1944

LINC01855 Gene

long intergenic non-protein coding RNA 1855

LINC01851 Gene

long intergenic non-protein coding RNA 1851

LINC01849 Gene

long intergenic non-protein coding RNA 1849

LINC01846 Gene

long intergenic non-protein coding RNA 1846

LINC01844 Gene

long intergenic non-protein coding RNA 1844

LINC01837 Gene

long intergenic non-protein coding RNA 1837

LINC01818 Gene

long intergenic non-protein coding RNA 1818

LINC01815 Gene

long intergenic non-protein coding RNA 1815

LINC01803 Gene

long intergenic non-protein coding RNA 1803

LINC01799 Gene

long intergenic non-protein coding RNA 1799

LINC01783 Gene

long intergenic non-protein coding RNA 1783

Predicted to enable triplet codon-amino acid adaptor activity. Predicted to be involved in translation. [provided by Alliance of Genome Resources, Mar 2025]

LINC01778 Gene

long intergenic non-protein coding RNA 1778

LINC01766 Gene

long intergenic non-protein coding RNA 1766

LINC01872 Gene

long intergenic non-protein coding RNA 1872

LINC01962 Gene

long intergenic non-protein coding RNA 1962

LINC01878 Gene

long intergenic non-protein coding RNA 1878

LINC01888 Gene

long intergenic non-protein coding RNA 1888

LINC01938 Gene

long intergenic non-protein coding RNA 1938

LINC01937 Gene

long intergenic non-protein coding RNA 1937

LINC01931 Gene

long intergenic non-protein coding RNA 1931

LINC01927 Gene

long intergenic non-protein coding RNA 1927

LINC01925 Gene

long intergenic non-protein coding RNA 1925

LINC01923 Gene

long intergenic non-protein coding RNA 1923

LINC01919 Gene

long intergenic non-protein coding RNA 1919

LINC01917 Gene

long intergenic non-protein coding RNA 1917

LINC01913 Gene

long intergenic non-protein coding RNA 1913

LINC01912 Gene

long intergenic non-protein coding RNA 1912

LINC01911 Gene

long intergenic non-protein coding RNA 1911

LINC01909 Gene

long intergenic non-protein coding RNA 1909

LINC01905 Gene

long intergenic non-protein coding RNA 1905

LINC01899 Gene

long intergenic non-protein coding RNA 1899

LINC01890 Gene

long intergenic non-protein coding RNA 1890

LINC01884 Gene

long intergenic non-protein coding RNA 1884

LINC00390 Gene

long intergenic non-protein coding RNA 390

LINC01052 Gene

long intergenic non-protein coding RNA 1052

LINC01066 Gene

long intergenic non-protein coding RNA 1066

LINC02016 Gene

long intergenic non-protein coding RNA 2016

LINC01694 Gene

long intergenic non-protein coding RNA 1694

LINC02587 Gene

long intergenic non-protein coding RNA 2587

LINC02204 Gene

long intergenic non-protein coding RNA 2204

LINC01785 Gene

long intergenic non-protein coding RNA 1785

RN7SL674P Gene

RNA, 7SL, cytoplasmic 674, pseudogene

TDRKH-AS1 Gene

TDRKH antisense RNA 1

RN7SL176P Gene

RNA, 7SL, cytoplasmic 176, pseudogene

LINC02207 Gene

long intergenic non-protein coding RNA 2207

LINC02446 Gene

long intergenic non-protein coding RNA 2446

LINC01857 Gene

long intergenic non-protein coding RNA 1857

LINC01871 Gene

long intergenic non-protein coding RNA 1871

PYDC2-AS1 Gene

PYDC2 antisense RNA 1

GRASLND Gene

glycosaminoglycan regulatory associated long non-coding RNA

OBI1-AS1 Gene

OBI1 antisense RNA 1

LINC01762 Gene

long intergenic non-protein coding RNA 1762

LINC02027 Gene

long intergenic non-protein coding RNA 2027

LINC01924 Gene

long intergenic non-protein coding RNA 1924

LINC01934 Gene

long intergenic non-protein coding RNA 1934

LINC02251 Gene

long intergenic non-protein coding RNA 2251

LINC02397 Gene

long intergenic non-protein coding RNA 2397

HSD11B1-AS1 Gene

HSD11B1 antisense RNA 1

LINC01967 Gene

long intergenic non-protein coding RNA 1967

LINC01357 Gene

long intergenic non-protein coding RNA 1357

LINC02593 Gene

long intergenic non-protein coding RNA 2593

LINC02362 Gene

long intergenic non-protein coding RNA 2362

LINC02523 Gene

long intergenic non-protein coding RNA 2523

LRRC52-AS1 Gene

LRRC52 antisense RNA 1

LINC01717 Gene

long intergenic non-protein coding RNA 1717

LINC02009 Gene

long intergenic non-protein coding RNA 2009

LINC01724 Gene

long intergenic non-protein coding RNA 1724

LINC02437 Gene

long intergenic non-protein coding RNA 2437

LINC01965 Gene

long intergenic non-protein coding RNA 1965

MRPL20-AS1 Gene

MRPL20 antisense RNA 1

LINC02836 Gene

long intergenic non-protein coding RNA 2836

LINC02785 Gene

long intergenic non-protein coding RNA 2785

LINC01831 Gene

long intergenic non-protein coding RNA 1831

LINC02053 Gene

long intergenic non-protein coding RNA 2053

LINC02768 Gene

long intergenic non-protein coding RNA 2768

LINC02360 Gene

long intergenic non-protein coding RNA 2360

LINC02237 Gene

long intergenic non-protein coding RNA 2237

LINC02511 Gene

long intergenic non-protein coding RNA 2511

LINC01695 Gene

long intergenic non-protein coding RNA 1695

DARS1-AS1 Gene

DARS1 antisense RNA 1

LINC02901 Gene

long intergenic non-protein coding RNA 2901

RNU6-645P Gene

RNA, U6 small nuclear 645, pseudogene

HDHD5-AS1 Gene

HDHD5 antisense RNA 1

SKAP1-AS2 Gene

SKAP1 antisense RNA 2

C10ORF95-AS1 Gene

C10orf95 antisense RNA 1

CFAP418-AS1 Gene

CFAP418 antisense RNA 1

IRAG1-AS1 Gene

IRAG1 antisense RNA 1

LINC02888 Gene

long intergenic non-protein coding RNA 2888

SCP2D1-AS1 Gene

SCP2D1 antisense RNA 1

LINC02903 Gene

long intergenic non-protein coding RNA 2903

LINC02899 Gene

long intergenic non-protein coding RNA 2899

C3ORF86P Gene

long intergenic non-protein coding RNA 694

ARF4-AS1 Gene

ARF4 antisense RNA 1

ITCH-AS1 Gene

ITCH antisense RNA 1

LINC02694 Gene

long intergenic non-protein coding RNA 2694

SNORA17B Gene

small nucleolar RNA, H/ACA box 17B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

LINC02902 Gene

long intergenic non-protein coding RNA 2902

LINC02798 Gene

long intergenic non-protein coding RNA 2798

RLIG1 Gene

RNA 5'-phosphate and 3'-OH ligase 1

Enables RNA ligase (ATP) activity. Involved in response to reactive oxygen species. [provided by Alliance of Genome Resources, Mar 2025]

SLC6A12-AS1 Gene

SLC6A12 antisense RNA 1

THBS3-AS1 Gene

THBS3 antisense RNA 1

WARS2-AS1 Gene

WARS2 antisense RNA 1

ACSL6-AS1 Gene

ACSL6 antisense RNA 1

CHROMR Gene

cholesterol induced regulator of metabolism RNA

LINC02615 Gene

long intergenic non-protein coding RNA 2615

KIF23-AS1 Gene

KIF23 and PAQR5 antisense RNA 1

LOXL2-AS1 Gene

LOXL2 antisense RNA 1

RPH3AL-AS1 Gene

RPH3AL antisense RNA 1

AP1G2-AS1 Gene

AP1G2 antisense RNA 1

LINC02696 Gene

long intergenic non-protein coding RNA 2696

ANXA2R-AS1 Gene

ANXA2R antisense RNA 1

LINC02614 Gene

long intergenic non-protein coding RNA 2614

CHMP3-AS1 Gene

CHMP3 and RNF103 antisense RNA 1

ZNF460-AS1 Gene

ZNF460 antisense RNA 1

LINC02609 Gene

long intergenic non-protein coding RNA 2609

KHDC1-AS1 Gene

KHDC1 antisense RNA 1

ECI1-AS1 Gene

ECI1 antisense RNA 1

RNF213-AS1 Gene

RNF213 antisense RNA 1

LINC02981 Gene

long intergenic non-protein coding RNA 2981

HMGA2-AS1 Gene

HMGA2 antisense RNA 1

HDAC4-AS1 Gene

HDAC4 antisense RNA 1

LINC02731 Gene

long intergenic non-protein coding RNA 2731

TNS2-AS1 Gene

TNS2 antisense RNA 1

LINC02987 Gene

long intergenic non-protein coding RNA 2987

TFAP2E-AS1 Gene

TFAP2E antisense RNA 1

HSD17B1-AS1 Gene

HSD17B1 antisense RNA 1

LINC02544 Gene

long intergenic non-protein coding RNA 2544

TAGAP-AS1 Gene

TAGAP antisense RNA 1

LINC02649 Gene

long intergenic non-protein coding RNA 2649

ECE1-AS1 Gene

ECE1 antisense RNA 1

SNORA63B Gene

small nucleolar RNA, H/ACA box 63B

Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]

PRDM4-AS1 Gene

PRDM4 antisense RNA 1

HRG-AS1 Gene

HRG and FETUB antisense RNA 1

ZNF225-AS1 Gene

ZNF225 and ZNF224 antisense RNA 1

HIF1A-AS3 Gene

HIF1A antisense RNA 3

LINC02728 Gene

long intergenic non-protein coding RNA 2728

LINC02803 Gene

long intergenic non-protein coding RNA 2803

LINC02349 Gene

long intergenic non-protein coding RNA 2349

LINC02539 Gene

long intergenic non-protein coding RNA 2539

LINC03002 Gene

long intergenic non-protein coding RNA 3002

CPVL-AS2 Gene

CPVL antisense RNA 2

GASK1B-AS1 Gene

GASK1B antisense RNA 1

LINC02381 Gene

long intergenic non-protein coding RNA 2381

TSKU-AS1 Gene

TSKU antisense RNA 1

LINC02232 Gene

long intergenic non-protein coding RNA 2232

RHOQ-AS1 Gene

RHOQ antisense RNA 1

ZNF143-AS1 Gene

ZNF143 antisense RNA 1

NINJ2-AS1 Gene

NINJ2 antisense RNA 1

LINC03100 Gene

long intergenic non-protein coding RNA 3100

SPINT1-AS1 Gene

SPINT1 antisense RNA 1

LINC02894 Gene

long intergenic non-protein coding RNA 2894

COA6-AS1 Gene

COA6 antisense RNA 1

LINC02328 Gene

long intergenic non-protein coding RNA 2328

PRDX6-AS1 Gene

PRDX6 antisense RNA 1

LINC01779 Gene

long intergenic non-protein coding RNA 1779

LINC03135 Gene

long intergenic non-protein coding RNA 3135

ARHGAP44-AS1 Gene

ARHGAP44 and MYOCD antisense RNA 1

LINC02965 Gene

long intergenic non-protein coding RNA 2965

LINC03052 Gene

long intergenic non-protein coding RNA 3052

LMNTD2-AS1 Gene

LMNTD2 antisense RNA 1

LINC02235 Gene

long intergenic non-protein coding RNA 2235

CYLD-AS1 Gene

CYLD antisense RNA 1

RUFY1-AS1 Gene

RUFY1 antisense RNA 1

CDH3-AS1 Gene

CDH3 antisense RNA 1

FOXO6-AS1 Gene

FOXO6 antisense RNA 1

SNHG26 Gene

small nucleolar RNA host gene 26

UBQLN1-AS1 Gene

UBQLN1 antisense RNA 1

DM1-AS Gene

DM1 locus antisense RNA

ILRUN-AS1 Gene

ILRUN antisense RNA 1

LINC02576 Gene

long intergenic non-protein coding RNA 2576

BTBD3-AS1 Gene

BTBD3 antisense RNA 1

GPC1-AS1 Gene

GPC1 antisense RNA 1

ATP2C2-AS1 Gene

ATP2C2 antisense RNA 1

SCIRT Gene

stem cell inhibitory RNA transcript

LINC02560 Gene

long intergenic non-protein coding RNA 2560

LIPT2-AS1 Gene

LIPT2 antisense RNA 1

LINC02762 Gene

long intergenic non-protein coding RNA 2762

RAB4A-AS1 Gene

RAB4A antisense RNA 1

NR4A1AS Gene

NR4A1 antisense RNA

CCR5AS Gene

CCR5 antisense RNA

MAP3K4-AS1 Gene

MAP3K4 antisense RNA 1

LINC02610 Gene

long intergenic non-protein coding RNA 2610

LINC02854 Gene

long intergenic non-protein coding RNA 2854

KIF1C-AS1 Gene

KIF1C antisense RNA 1

CPNE8-AS1 Gene

CPNE8 antisense RNA 1

TNS1-AS1 Gene

TNS1 antisense RNA 1

LINC02983 Gene

long intergenic non-protein coding RNA 2983

DDX59-AS1 Gene

DDX59 antisense RNA 1

ADAMTSL4-AS2 Gene

ADAMTSL4 antisense RNA 2

ZNF606-AS1 Gene

ZNF606 antisense RNA 1

SLC39A13-AS1 Gene

SLC39A13 antisense RNA 1

DAAM2-AS1 Gene

DAAM2 antisense RNA 1

LINC02268 Gene

long intergenic non-protein coding RNA 2268

LY6S-AS1 Gene

LY6S antisense RNA 1

LINC02893 Gene

long intergenic non-protein coding RNA 2893

FMNL1-AS1 Gene

FMNL1 antisense RNA 1

DUT-AS1 Gene

DUT antisense RNA 1

SYT9-AS1 Gene

SYT9 antisense RNA 1

SLC30A4-AS1 Gene

SLC30A4 antisense RNA 1

mitochondrial rna modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the mitochondrial rna modification biological process from the curated GO Biological Process Annotations 2015 dataset.

mitochondrial RNA modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the mitochondrial RNA modification biological process from the curated GO Biological Process Annotations 2023 dataset.

mitochondrial RNA modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the mitochondrial RNA modification biological process from the curated GO Biological Process Annotations 2025 dataset.

RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription pathway from the Reactome Pathways dataset.

negative regulation of transcription from rna polymerase ii promoter by histone modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of transcription from rna polymerase ii promoter by histone modification biological process from the curated GO Biological Process Annotations 2015 dataset.

rna modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna modification biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter by histone modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter by histone modification biological process from the curated GO Biological Process Annotations 2015 dataset.

RNA modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA modification biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the RNA modification biological process from the curated GO Biological Process Annotations 2025 dataset.

Regulation of apoptosis and RNA modification Gene Set

From CM4AI U2OS Cell Map Protein Localization Assemblies

proteins comprising Regulation of apoptosis and RNA modification assembly using integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.

mitochondrial trna modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the mitochondrial trna modification biological process from the curated GO Biological Process Annotations 2015 dataset.

mitochondrial trna wobble uridine modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the mitochondrial trna wobble uridine modification biological process from the curated GO Biological Process Annotations 2015 dataset.

mitochondrial tRNA modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the mitochondrial tRNA modification biological process from the curated GO Biological Process Annotations 2023 dataset.

mitochondrial tRNA modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the mitochondrial tRNA modification biological process from the curated GO Biological Process Annotations 2025 dataset.

mitochondrial tRNA wobble uridine modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the mitochondrial tRNA wobble uridine modification biological process from the curated GO Biological Process Annotations 2025 dataset.

rna-directed rna polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the rna-directed rna polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

nuclear rna-directed rna polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the nuclear rna-directed rna polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

rna-directed rna polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the rna-directed rna polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

nuclear rna-directed rna polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the nuclear rna-directed rna polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

negative regulation of rna-directed rna polymerase activity Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of rna-directed rna polymerase activity biological process from the curated GO Biological Process Annotations 2015 dataset.

production of small rna involved in gene silencing by rna Gene Set

From GO Biological Process Annotations 2015

genes participating in the production of small rna involved in gene silencing by rna biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of telomeric rna transcription from rna pol ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of telomeric rna transcription from rna pol ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of production of small rna involved in gene silencing by rna Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of production of small rna involved in gene silencing by rna biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of telomeric rna transcription from rna pol ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of telomeric rna transcription from rna pol ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of rna-directed rna polymerase activity Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of rna-directed rna polymerase activity biological process from the curated GO Biological Process Annotations 2015 dataset.

rna-directed rna polymerase complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the rna-directed rna polymerase complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

nuclear rna-directed rna polymerase complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the nuclear rna-directed rna polymerase complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

steroid receptor rna activator rna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the steroid receptor rna activator rna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna-directed rna polymerase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna-directed rna polymerase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

Histone RNA hairpin-binding protein, RNA-binding domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Histone RNA hairpin-binding protein, RNA-binding domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Phosphorylated adapter RNA export protein, RNA-binding domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Phosphorylated adapter RNA export protein, RNA-binding domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Nuclear RNA export factor Tap, RNA-binding domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Nuclear RNA export factor Tap, RNA-binding domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

positive regulation of telomeric RNA transcription from RNA pol II promoter Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of telomeric RNA transcription from RNA pol II promoter biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of RNA-dependent RNA polymerase activity Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of RNA-dependent RNA polymerase activity biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of telomeric RNA transcription from RNA pol II promoter Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of telomeric RNA transcription from RNA pol II promoter biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of RNA-dependent RNA polymerase activity Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of RNA-dependent RNA polymerase activity biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA-directed RNA polymerase complex Gene Set

From GO Cellular Component Annotations 2023

proteins localized to the RNA-directed RNA polymerase complex cellular component from the curated GO Cellular Component Annotations 2023 dataset.

RNA-dependent RNA polymerase activity Gene Set

From GO Molecular Function Annotations 2023

genes performing the RNA-dependent RNA polymerase activity molecular function from the curated GO Molecular Function Annotations 2023 dataset.

steroid receptor RNA activator RNA binding Gene Set

From GO Molecular Function Annotations 2023

genes performing the steroid receptor RNA activator RNA binding molecular function from the curated GO Molecular Function Annotations 2023 dataset.

negative regulation of RNA-dependent RNA polymerase activity Gene Set

From GO Biological Process Annotations 2025

genes participating in the negative regulation of RNA-dependent RNA polymerase activity biological process from the curated GO Biological Process Annotations 2025 dataset.

RNA-directed RNA polymerase complex Gene Set

From GO Cellular Component Annotations 2025

proteins localized to the RNA-directed RNA polymerase complex cellular component from the curated GO Cellular Component Annotations 2025 dataset.

RNA-directed RNA polymerase activity Gene Set

From GO Molecular Function Annotations 2025

genes performing the RNA-directed RNA polymerase activity molecular function from the curated GO Molecular Function Annotations 2025 dataset.

steroid receptor RNA activator RNA binding Gene Set

From GO Molecular Function Annotations 2025

genes performing the steroid receptor RNA activator RNA binding molecular function from the curated GO Molecular Function Annotations 2025 dataset.

RNA-directed RNA polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores 2025

proteins localized to the RNA-directed RNA polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.

Nuclear RNA-directed RNA polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores 2025

proteins localized to the Nuclear RNA-directed RNA polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.

Nuclear RNA-directed RNA polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025

proteins co-occuring with the Nuclear RNA-directed RNA polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.

Viral RNA-directed RNA polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025

proteins co-occuring with the Viral RNA-directed RNA polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.

RNA-directed RNA polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025

proteins co-occuring with the RNA-directed RNA polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.

PMC9883165-41375_2022_1744_MOESM3_ESM.xlsx-RNA-Seq_of_CEBPA_specific_genes-RNA-Seq_analysis_of_genes_associated_with_a_DHS_that_has_a_CEBPAx2_specific_Hi-C_interaction_CEBPA Gene Set

From Rummagene Transcription Factor Associations 2026

target genes of the PMC9883165-41375_2022_1744_MOESM3_ESM.xlsx-RNA-Seq_of_CEBPA_specific_genes-RNA-Seq_analysis_of_genes_associated_with_a_DHS_that_has_a_CEBPAx2_specific_Hi-C_interaction_CEBPA transcription factor from the Rummagene Transcription Factor Associations 2026 dataset.

mitochondrial rna 3'-end processing Gene Set

From GO Biological Process Annotations 2015

genes participating in the mitochondrial rna 3'-end processing biological process from the curated GO Biological Process Annotations 2015 dataset.

mitochondrial rna surveillance Gene Set

From GO Biological Process Annotations 2015

genes participating in the mitochondrial rna surveillance biological process from the curated GO Biological Process Annotations 2015 dataset.

mitochondrial rna catabolic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the mitochondrial rna catabolic process biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of mitochondrial rna catabolic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of mitochondrial rna catabolic process biological process from the curated GO Biological Process Annotations 2015 dataset.

mitochondrial rna metabolic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the mitochondrial rna metabolic process biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of mitochondrial rna catabolic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of mitochondrial rna catabolic process biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of mitochondrial rna catabolic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of mitochondrial rna catabolic process biological process from the curated GO Biological Process Annotations 2015 dataset.

mitochondrial rna 5'-end processing Gene Set

From GO Biological Process Annotations 2015

genes participating in the mitochondrial rna 5'-end processing biological process from the curated GO Biological Process Annotations 2015 dataset.

mitochondrial rna processing Gene Set

From GO Biological Process Annotations 2015

genes participating in the mitochondrial rna processing biological process from the curated GO Biological Process Annotations 2015 dataset.

Mitochondrial degradasome RNA helicase subunit, C-terminal domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Mitochondrial degradasome RNA helicase subunit, C-terminal domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

positive regulation of mitochondrial RNA catabolic process Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of mitochondrial RNA catabolic process biological process from the curated GO Biological Process Annotations 2023 dataset.

mitochondrial RNA metabolic process Gene Set

From GO Biological Process Annotations 2023

genes participating in the mitochondrial RNA metabolic process biological process from the curated GO Biological Process Annotations 2023 dataset.

mitochondrial RNA 5'-end processing Gene Set

From GO Biological Process Annotations 2023

genes participating in the mitochondrial RNA 5'-end processing biological process from the curated GO Biological Process Annotations 2023 dataset.

mitochondrial RNA processing Gene Set

From GO Biological Process Annotations 2023

genes participating in the mitochondrial RNA processing biological process from the curated GO Biological Process Annotations 2023 dataset.

mitochondrial RNA 3'-end processing Gene Set

From GO Biological Process Annotations 2023

genes participating in the mitochondrial RNA 3'-end processing biological process from the curated GO Biological Process Annotations 2023 dataset.

mitochondrial RNA surveillance Gene Set

From GO Biological Process Annotations 2023

genes participating in the mitochondrial RNA surveillance biological process from the curated GO Biological Process Annotations 2023 dataset.

mitochondrial RNA catabolic process Gene Set

From GO Biological Process Annotations 2023

genes participating in the mitochondrial RNA catabolic process biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of mitochondrial RNA catabolic process Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of mitochondrial RNA catabolic process biological process from the curated GO Biological Process Annotations 2023 dataset.

Mitochondrial RNA degradation Gene Set

From Reactome Pathways 2024

proteins participating in the Mitochondrial RNA degradation pathway from the Reactome Pathways 2024 dataset.

mitochondrial RNA catabolic process Gene Set

From GO Biological Process Annotations 2025

genes participating in the mitochondrial RNA catabolic process biological process from the curated GO Biological Process Annotations 2025 dataset.

positive regulation of mitochondrial RNA catabolic process Gene Set

From GO Biological Process Annotations 2025

genes participating in the positive regulation of mitochondrial RNA catabolic process biological process from the curated GO Biological Process Annotations 2025 dataset.

mitochondrial RNA metabolic process Gene Set

From GO Biological Process Annotations 2025

genes participating in the mitochondrial RNA metabolic process biological process from the curated GO Biological Process Annotations 2025 dataset.

mitochondrial RNA 5'-end processing Gene Set

From GO Biological Process Annotations 2025

genes participating in the mitochondrial RNA 5'-end processing biological process from the curated GO Biological Process Annotations 2025 dataset.

mitochondrial RNA processing Gene Set

From GO Biological Process Annotations 2025

genes participating in the mitochondrial RNA processing biological process from the curated GO Biological Process Annotations 2025 dataset.

mitochondrial RNA 3'-end processing Gene Set

From GO Biological Process Annotations 2025

genes participating in the mitochondrial RNA 3'-end processing biological process from the curated GO Biological Process Annotations 2025 dataset.

mitochondrial RNA surveillance Gene Set

From GO Biological Process Annotations 2025

genes participating in the mitochondrial RNA surveillance biological process from the curated GO Biological Process Annotations 2025 dataset.

regulation of mitochondrial RNA catabolic process Gene Set

From GO Biological Process Annotations 2025

genes participating in the regulation of mitochondrial RNA catabolic process biological process from the curated GO Biological Process Annotations 2025 dataset.

Mitochondrial DNA-directed RNA polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores 2025

proteins localized to the Mitochondrial DNA-directed RNA polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.

Mitochondrial DNA-directed RNA polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025

proteins co-occuring with the Mitochondrial DNA-directed RNA polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.

RNAse mitochondrial RNA processing (MRP) complex Gene Set

From CM4AI U2OS Cell Map Protein Localization Assemblies

proteins comprising RNAse mitochondrial RNA processing (MRP) complex assembly using integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.

MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, NUCLEAR TYPE 1;MC5DN1 MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, ATPAF2 TYPE Gene Set

From CTD Gene-Disease Associations

genes/proteins associated with the disease MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, NUCLEAR TYPE 1;MC5DN1 MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, ATPAF2 TYPE from the curated CTD Gene-Disease Associations dataset.

Mitochondrial complex V (ATP synthase) deficiency mitochondrial type 1 Gene Set

From DISEASES Text-mining Gene-Disease Association Evidence Scores 2025

genes co-occuring with the disease Mitochondrial complex V (ATP synthase) deficiency mitochondrial type 1 in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.

the prc2 complex sets long-term gene silencing through modification of histone tails Gene Set

From Biocarta Pathways

proteins participating in the the prc2 complex sets long-term gene silencing through modification of histone tails pathway from the Biocarta Pathways dataset.

modification Gene Set

From GeneRIF Biological Term Annotations

genes co-occuring with the biological term modification in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

peptidyl-glycine modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-glycine modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-glutamine modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-glutamine modification biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of histone modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of histone modification biological process from the curated GO Biological Process Annotations 2015 dataset.

trna thio-modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the trna thio-modification biological process from the curated GO Biological Process Annotations 2015 dataset.

protein modification by small protein conjugation Gene Set

From GO Biological Process Annotations 2015

genes participating in the protein modification by small protein conjugation biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-methionine modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-methionine modification biological process from the curated GO Biological Process Annotations 2015 dataset.

trna wobble base modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the trna wobble base modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-alanine modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-alanine modification biological process from the curated GO Biological Process Annotations 2015 dataset.

modification of morphology or physiology of other organism involved in symbiotic interaction Gene Set

From GO Biological Process Annotations 2015

genes participating in the modification of morphology or physiology of other organism involved in symbiotic interaction biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of protein modification process Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of protein modification process biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of histone modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of histone modification biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of histone modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of histone modification biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of mrna modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of mrna modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-lysine modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-lysine modification biological process from the curated GO Biological Process Annotations 2015 dataset.

covalent chromatin modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the covalent chromatin modification biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of protein modification process Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of protein modification process biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-tryptophan modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-tryptophan modification biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of mrna modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of mrna modification biological process from the curated GO Biological Process Annotations 2015 dataset.

lipoprotein modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the lipoprotein modification biological process from the curated GO Biological Process Annotations 2015 dataset.

rrna modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the rrna modification biological process from the curated GO Biological Process Annotations 2015 dataset.

actin modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the actin modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-asparagine modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-asparagine modification biological process from the curated GO Biological Process Annotations 2015 dataset.

heparan sulfate proteoglycan biosynthetic process, enzymatic modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the heparan sulfate proteoglycan biosynthetic process, enzymatic modification biological process from the curated GO Biological Process Annotations 2015 dataset.

modification of morphology or physiology of other organism Gene Set

From GO Biological Process Annotations 2015

genes participating in the modification of morphology or physiology of other organism biological process from the curated GO Biological Process Annotations 2015 dataset.

snrna modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the snrna modification biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of chromatin modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of chromatin modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-aspartic acid modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-aspartic acid modification biological process from the curated GO Biological Process Annotations 2015 dataset.

mrna modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the mrna modification biological process from the curated GO Biological Process Annotations 2015 dataset.

protein modification process Gene Set

From GO Biological Process Annotations 2015

genes participating in the protein modification process biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of protein modification by small protein conjugation or removal Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of protein modification by small protein conjugation or removal biological process from the curated GO Biological Process Annotations 2015 dataset.

lipid modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the lipid modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-amino acid modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-amino acid modification biological process from the curated GO Biological Process Annotations 2015 dataset.

charged-trna amino acid modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the charged-trna amino acid modification biological process from the curated GO Biological Process Annotations 2015 dataset.

chromatin modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the chromatin modification biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of post-translational protein modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of post-translational protein modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-threonine modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-threonine modification biological process from the curated GO Biological Process Annotations 2015 dataset.

post-translational protein modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the post-translational protein modification biological process from the curated GO Biological Process Annotations 2015 dataset.

n-terminal protein amino acid modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the n-terminal protein amino acid modification biological process from the curated GO Biological Process Annotations 2015 dataset.

c-terminal protein amino acid modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the c-terminal protein amino acid modification biological process from the curated GO Biological Process Annotations 2015 dataset.

modification by host of symbiont morphology or physiology Gene Set

From GO Biological Process Annotations 2015

genes participating in the modification by host of symbiont morphology or physiology biological process from the curated GO Biological Process Annotations 2015 dataset.

modification by host of symbiont molecular function Gene Set

From GO Biological Process Annotations 2015

genes participating in the modification by host of symbiont molecular function biological process from the curated GO Biological Process Annotations 2015 dataset.

modification by virus of host mrna processing Gene Set

From GO Biological Process Annotations 2015

genes participating in the modification by virus of host mrna processing biological process from the curated GO Biological Process Annotations 2015 dataset.

trna wobble uridine modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the trna wobble uridine modification biological process from the curated GO Biological Process Annotations 2015 dataset.

cellular protein modification process Gene Set

From GO Biological Process Annotations 2015

genes participating in the cellular protein modification process biological process from the curated GO Biological Process Annotations 2015 dataset.

dna modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the dna modification biological process from the curated GO Biological Process Annotations 2015 dataset.

histone modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the histone modification biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of protein modification by small protein conjugation or removal Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of protein modification by small protein conjugation or removal biological process from the curated GO Biological Process Annotations 2015 dataset.

trna modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the trna modification biological process from the curated GO Biological Process Annotations 2015 dataset.

co-translational protein modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the co-translational protein modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-lysine modification to peptidyl-hypusine Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-lysine modification to peptidyl-hypusine biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-serine modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-serine modification biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of protein modification process Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of protein modification process biological process from the curated GO Biological Process Annotations 2015 dataset.

macromolecule modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the macromolecule modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-proline modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-proline modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-glutamic acid modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-glutamic acid modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-tyrosine modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-tyrosine modification biological process from the curated GO Biological Process Annotations 2015 dataset.

modification-dependent protein catabolic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the modification-dependent protein catabolic process biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of post-translational protein modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of post-translational protein modification biological process from the curated GO Biological Process Annotations 2015 dataset.

modification-dependent macromolecule catabolic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the modification-dependent macromolecule catabolic process biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of protein modification by small protein conjugation or removal Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of protein modification by small protein conjugation or removal biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of chromatin modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of chromatin modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptide modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptide modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-histidine modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-histidine modification biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of chromatin modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of chromatin modification biological process from the curated GO Biological Process Annotations 2015 dataset.

protein modification by small protein removal Gene Set

From GO Biological Process Annotations 2015

genes participating in the protein modification by small protein removal biological process from the curated GO Biological Process Annotations 2015 dataset.

histone h3-k9 modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the histone h3-k9 modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-cysteine modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-cysteine modification biological process from the curated GO Biological Process Annotations 2015 dataset.

peptidyl-arginine modification Gene Set

From GO Biological Process Annotations 2015

genes participating in the peptidyl-arginine modification biological process from the curated GO Biological Process Annotations 2015 dataset.

modification by symbiont of host morphology or physiology Gene Set

From GO Biological Process Annotations 2015

genes participating in the modification by symbiont of host morphology or physiology biological process from the curated GO Biological Process Annotations 2015 dataset.

protein modification by small protein conjugation or removal Gene Set

From GO Biological Process Annotations 2015

genes participating in the protein modification by small protein conjugation or removal biological process from the curated GO Biological Process Annotations 2015 dataset.

terminal O-glycans residues modification Gene Set

From HumanCyc Pathways

proteins participating in the terminal O-glycans residues modification pathway from the HumanCyc Pathways dataset.

tRNA-i(6)A37 modification enzyme MiaB Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the tRNA-i(6)A37 modification enzyme MiaB protein domain from the InterPro Predicted Protein Domain Annotations dataset.

tRNA modification GTPase MnmE domain 2 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the tRNA modification GTPase MnmE domain 2 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Chromatin modification-related protein Eaf7/MRGBP Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Chromatin modification-related protein Eaf7/MRGBP protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX protein domain from the InterPro Predicted Protein Domain Annotations dataset.

tRNA modification GTPase MnmE C-terminal domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the tRNA modification GTPase MnmE C-terminal domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Modification methylase HemK Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Modification methylase HemK protein domain from the InterPro Predicted Protein Domain Annotations dataset.

tRNA modification GTPase MnmE Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the tRNA modification GTPase MnmE protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Post-translational modification: synthesis of GPI-anchored proteins Gene Set

From Reactome Pathways 2014

proteins participating in the Post-translational modification: synthesis of GPI-anchored proteins pathway from the Reactome Pathways dataset.

Post-translational protein modification Gene Set

From Reactome Pathways 2014

proteins participating in the Post-translational protein modification pathway from the Reactome Pathways dataset.

Transport to the Golgi and subsequent modification Gene Set

From Reactome Pathways 2014

proteins participating in the Transport to the Golgi and subsequent modification pathway from the Reactome Pathways dataset.

protein modification process Gene Set

From GO Biological Process Annotations 2023

genes participating in the protein modification process biological process from the curated GO Biological Process Annotations 2023 dataset.

tRNA modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the tRNA modification biological process from the curated GO Biological Process Annotations 2023 dataset.

heparan sulfate proteoglycan biosynthetic process, enzymatic modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the heparan sulfate proteoglycan biosynthetic process, enzymatic modification biological process from the curated GO Biological Process Annotations 2023 dataset.

protein modification by small protein conjugation Gene Set

From GO Biological Process Annotations 2023

genes participating in the protein modification by small protein conjugation biological process from the curated GO Biological Process Annotations 2023 dataset.

post-translational protein modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the post-translational protein modification biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of post-translational protein modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of post-translational protein modification biological process from the curated GO Biological Process Annotations 2023 dataset.

tRNA wobble uridine modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the tRNA wobble uridine modification biological process from the curated GO Biological Process Annotations 2023 dataset.

histone modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the histone modification biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of protein modification process Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of protein modification process biological process from the curated GO Biological Process Annotations 2023 dataset.

tRNA thio-modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the tRNA thio-modification biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of modification of synaptic structure Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of modification of synaptic structure biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-methionine modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-methionine modification biological process from the curated GO Biological Process Annotations 2023 dataset.

modification of postsynaptic actin cytoskeleton Gene Set

From GO Biological Process Annotations 2023

genes participating in the modification of postsynaptic actin cytoskeleton biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of post-translational protein modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of post-translational protein modification biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of post-translational protein modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of post-translational protein modification biological process from the curated GO Biological Process Annotations 2023 dataset.

mRNA modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the mRNA modification biological process from the curated GO Biological Process Annotations 2023 dataset.

co-translational protein modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the co-translational protein modification biological process from the curated GO Biological Process Annotations 2023 dataset.

N-terminal protein amino acid modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the N-terminal protein amino acid modification biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of modification of postsynaptic structure Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of modification of postsynaptic structure biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of modification of postsynaptic actin cytoskeleton Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of modification of postsynaptic actin cytoskeleton biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-lysine modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-lysine modification biological process from the curated GO Biological Process Annotations 2023 dataset.

modification of synaptic structure Gene Set

From GO Biological Process Annotations 2023

genes participating in the modification of synaptic structure biological process from the curated GO Biological Process Annotations 2023 dataset.

tRNA wobble cytosine modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the tRNA wobble cytosine modification biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-glutamic acid modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-glutamic acid modification biological process from the curated GO Biological Process Annotations 2023 dataset.

snRNA modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the snRNA modification biological process from the curated GO Biological Process Annotations 2023 dataset.

actin modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the actin modification biological process from the curated GO Biological Process Annotations 2023 dataset.

tRNA threonylcarbamoyladenosine modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the tRNA threonylcarbamoyladenosine modification biological process from the curated GO Biological Process Annotations 2023 dataset.

modification of dendritic spine Gene Set

From GO Biological Process Annotations 2023

genes participating in the modification of dendritic spine biological process from the curated GO Biological Process Annotations 2023 dataset.

rRNA modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the rRNA modification biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-proline modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-proline modification biological process from the curated GO Biological Process Annotations 2023 dataset.

protein modification by small protein removal Gene Set

From GO Biological Process Annotations 2023

genes participating in the protein modification by small protein removal biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of histone modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of histone modification biological process from the curated GO Biological Process Annotations 2023 dataset.

modification-dependent protein catabolic process Gene Set

From GO Biological Process Annotations 2023

genes participating in the modification-dependent protein catabolic process biological process from the curated GO Biological Process Annotations 2023 dataset.

peptide modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptide modification biological process from the curated GO Biological Process Annotations 2023 dataset.

lipid modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the lipid modification biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of protein modification by small protein conjugation or removal Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of protein modification by small protein conjugation or removal biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of protein modification by small protein conjugation or removal Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of protein modification by small protein conjugation or removal biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of protein modification process Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of protein modification process biological process from the curated GO Biological Process Annotations 2023 dataset.

macromolecule modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the macromolecule modification biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of protein modification by small protein conjugation or removal Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of protein modification by small protein conjugation or removal biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-arginine modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-arginine modification biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-threonine modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-threonine modification biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-serine modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-serine modification biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of protein modification process Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of protein modification process biological process from the curated GO Biological Process Annotations 2023 dataset.

protein modification by small protein conjugation or removal Gene Set

From GO Biological Process Annotations 2023

genes participating in the protein modification by small protein conjugation or removal biological process from the curated GO Biological Process Annotations 2023 dataset.

DNA modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the DNA modification biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-glycine modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-glycine modification biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-tyrosine modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-tyrosine modification biological process from the curated GO Biological Process Annotations 2023 dataset.

tRNA wobble base modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the tRNA wobble base modification biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-amino acid modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-amino acid modification biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-cysteine modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-cysteine modification biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-glutamine modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-glutamine modification biological process from the curated GO Biological Process Annotations 2023 dataset.

modification of postsynaptic structure Gene Set

From GO Biological Process Annotations 2023

genes participating in the modification of postsynaptic structure biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-aspartic acid modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-aspartic acid modification biological process from the curated GO Biological Process Annotations 2023 dataset.

C-terminal protein amino acid modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the C-terminal protein amino acid modification biological process from the curated GO Biological Process Annotations 2023 dataset.

modification-dependent macromolecule catabolic process Gene Set

From GO Biological Process Annotations 2023

genes participating in the modification-dependent macromolecule catabolic process biological process from the curated GO Biological Process Annotations 2023 dataset.

lipid modification by small protein conjugation Gene Set

From GO Biological Process Annotations 2023

genes participating in the lipid modification by small protein conjugation biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-histidine modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-histidine modification biological process from the curated GO Biological Process Annotations 2023 dataset.

charged-tRNA amino acid modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the charged-tRNA amino acid modification biological process from the curated GO Biological Process Annotations 2023 dataset.

histone H3-K9 modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the histone H3-K9 modification biological process from the curated GO Biological Process Annotations 2023 dataset.

peptidyl-alanine modification Gene Set

From GO Biological Process Annotations 2023

genes participating in the peptidyl-alanine modification biological process from the curated GO Biological Process Annotations 2023 dataset.

polyubiquitin modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2023

genes performing the polyubiquitin modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2023 dataset.

poly-ADP-D-ribose modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2023

genes performing the poly-ADP-D-ribose modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2023 dataset.

ADP-D-ribose modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2023

genes performing the ADP-D-ribose modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2023 dataset.

K48-linked polyubiquitin modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2023

genes performing the K48-linked polyubiquitin modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2023 dataset.

K6-linked polyubiquitin modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2023

genes performing the K6-linked polyubiquitin modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2023 dataset.

ubiquitin modification-dependent histone binding Gene Set

From GO Molecular Function Annotations 2023

genes performing the ubiquitin modification-dependent histone binding molecular function from the curated GO Molecular Function Annotations 2023 dataset.

K63-linked polyubiquitin modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2023

genes performing the K63-linked polyubiquitin modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2023 dataset.

K11-linked polyubiquitin modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2023

genes performing the K11-linked polyubiquitin modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2023 dataset.

ubiquitination-like modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2023

genes performing the ubiquitination-like modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2023 dataset.

modification of postsynaptic actin cytoskeleton Gene Set

From SynGO Synaptic Gene Annotations

genes associated with the synaptic term modification of postsynaptic actin cytoskeleton from the SynGO Synaptic Gene Annotations dataset.

regulation of modification of postsynaptic structure Gene Set

From SynGO Synaptic Gene Annotations

genes associated with the synaptic term regulation of modification of postsynaptic structure from the SynGO Synaptic Gene Annotations dataset.

regulation of modification of postsynaptic actin cytoskeleton Gene Set

From SynGO Synaptic Gene Annotations

genes associated with the synaptic term regulation of modification of postsynaptic actin cytoskeleton from the SynGO Synaptic Gene Annotations dataset.

modification of postsynaptic structure Gene Set

From SynGO Synaptic Gene Annotations

genes associated with the synaptic term modification of postsynaptic structure from the SynGO Synaptic Gene Annotations dataset.

regulation of modification of synapse structure, modulating synaptic transmission Gene Set

From SynGO Synaptic Gene Annotations

genes associated with the synaptic term regulation of modification of synapse structure, modulating synaptic transmission from the SynGO Synaptic Gene Annotations dataset.

modification of synaptic structure, modulating synaptic transmission Gene Set

From SynGO Synaptic Gene Annotations

genes associated with the synaptic term modification of synaptic structure, modulating synaptic transmission from the SynGO Synaptic Gene Annotations dataset.

Post-translational modification: synthesis of GPI-anchored proteins Gene Set

From Reactome Pathways 2024

proteins participating in the Post-translational modification: synthesis of GPI-anchored proteins pathway from the Reactome Pathways 2024 dataset.

Post-translational protein modification Gene Set

From Reactome Pathways 2024

proteins participating in the Post-translational protein modification pathway from the Reactome Pathways 2024 dataset.

Transport to the Golgi and subsequent modification Gene Set

From Reactome Pathways 2024

proteins participating in the Transport to the Golgi and subsequent modification pathway from the Reactome Pathways 2024 dataset.

rRNA modification in the mitochondrion Gene Set

From Reactome Pathways 2024

proteins participating in the rRNA modification in the mitochondrion pathway from the Reactome Pathways 2024 dataset.

rRNA modification in the nucleus and cytosol Gene Set

From Reactome Pathways 2024

proteins participating in the rRNA modification in the nucleus and cytosol pathway from the Reactome Pathways 2024 dataset.

tRNA modification in the mitochondrion Gene Set

From Reactome Pathways 2024

proteins participating in the tRNA modification in the mitochondrion pathway from the Reactome Pathways 2024 dataset.

tRNA modification in the nucleus and cytosol Gene Set

From Reactome Pathways 2024

proteins participating in the tRNA modification in the nucleus and cytosol pathway from the Reactome Pathways 2024 dataset.

protein modification process Gene Set

From GO Biological Process Annotations 2025

genes participating in the protein modification process biological process from the curated GO Biological Process Annotations 2025 dataset.

tRNA modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the tRNA modification biological process from the curated GO Biological Process Annotations 2025 dataset.

protein modification by small protein conjugation Gene Set

From GO Biological Process Annotations 2025

genes participating in the protein modification by small protein conjugation biological process from the curated GO Biological Process Annotations 2025 dataset.

mRNA modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the mRNA modification biological process from the curated GO Biological Process Annotations 2025 dataset.

post-translational protein modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the post-translational protein modification biological process from the curated GO Biological Process Annotations 2025 dataset.

negative regulation of post-translational protein modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the negative regulation of post-translational protein modification biological process from the curated GO Biological Process Annotations 2025 dataset.

tRNA wobble uridine modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the tRNA wobble uridine modification biological process from the curated GO Biological Process Annotations 2025 dataset.

positive regulation of protein modification process Gene Set

From GO Biological Process Annotations 2025

genes participating in the positive regulation of protein modification process biological process from the curated GO Biological Process Annotations 2025 dataset.

tRNA thio-modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the tRNA thio-modification biological process from the curated GO Biological Process Annotations 2025 dataset.

regulation of modification of synaptic structure Gene Set

From GO Biological Process Annotations 2025

genes participating in the regulation of modification of synaptic structure biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-methionine modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-methionine modification biological process from the curated GO Biological Process Annotations 2025 dataset.

modification of postsynaptic actin cytoskeleton Gene Set

From GO Biological Process Annotations 2025

genes participating in the modification of postsynaptic actin cytoskeleton biological process from the curated GO Biological Process Annotations 2025 dataset.

positive regulation of post-translational protein modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the positive regulation of post-translational protein modification biological process from the curated GO Biological Process Annotations 2025 dataset.

regulation of post-translational protein modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the regulation of post-translational protein modification biological process from the curated GO Biological Process Annotations 2025 dataset.

co-translational protein modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the co-translational protein modification biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-lysine modification to peptidyl-hypusine Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-lysine modification to peptidyl-hypusine biological process from the curated GO Biological Process Annotations 2025 dataset.

N-terminal protein amino acid modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the N-terminal protein amino acid modification biological process from the curated GO Biological Process Annotations 2025 dataset.

regulation of modification of postsynaptic structure Gene Set

From GO Biological Process Annotations 2025

genes participating in the regulation of modification of postsynaptic structure biological process from the curated GO Biological Process Annotations 2025 dataset.

regulation of modification of postsynaptic actin cytoskeleton Gene Set

From GO Biological Process Annotations 2025

genes participating in the regulation of modification of postsynaptic actin cytoskeleton biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-lysine modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-lysine modification biological process from the curated GO Biological Process Annotations 2025 dataset.

modification of synaptic structure Gene Set

From GO Biological Process Annotations 2025

genes participating in the modification of synaptic structure biological process from the curated GO Biological Process Annotations 2025 dataset.

tRNA wobble cytosine modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the tRNA wobble cytosine modification biological process from the curated GO Biological Process Annotations 2025 dataset.

regulation of translational initiation by tRNA modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the regulation of translational initiation by tRNA modification biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-glutamic acid modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-glutamic acid modification biological process from the curated GO Biological Process Annotations 2025 dataset.

snRNA modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the snRNA modification biological process from the curated GO Biological Process Annotations 2025 dataset.

protein histidyl modification to diphthamide Gene Set

From GO Biological Process Annotations 2025

genes participating in the protein histidyl modification to diphthamide biological process from the curated GO Biological Process Annotations 2025 dataset.

actin modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the actin modification biological process from the curated GO Biological Process Annotations 2025 dataset.

tRNA threonylcarbamoyladenosine modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the tRNA threonylcarbamoyladenosine modification biological process from the curated GO Biological Process Annotations 2025 dataset.

rRNA modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the rRNA modification biological process from the curated GO Biological Process Annotations 2025 dataset.

protein modification by small protein removal Gene Set

From GO Biological Process Annotations 2025

genes participating in the protein modification by small protein removal biological process from the curated GO Biological Process Annotations 2025 dataset.

modification-dependent protein catabolic process Gene Set

From GO Biological Process Annotations 2025

genes participating in the modification-dependent protein catabolic process biological process from the curated GO Biological Process Annotations 2025 dataset.

peptide modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptide modification biological process from the curated GO Biological Process Annotations 2025 dataset.

lipid modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the lipid modification biological process from the curated GO Biological Process Annotations 2025 dataset.

regulation of protein modification by small protein conjugation or removal Gene Set

From GO Biological Process Annotations 2025

genes participating in the regulation of protein modification by small protein conjugation or removal biological process from the curated GO Biological Process Annotations 2025 dataset.

positive regulation of protein modification by small protein conjugation or removal Gene Set

From GO Biological Process Annotations 2025

genes participating in the positive regulation of protein modification by small protein conjugation or removal biological process from the curated GO Biological Process Annotations 2025 dataset.

negative regulation of protein modification process Gene Set

From GO Biological Process Annotations 2025

genes participating in the negative regulation of protein modification process biological process from the curated GO Biological Process Annotations 2025 dataset.

macromolecule modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the macromolecule modification biological process from the curated GO Biological Process Annotations 2025 dataset.

negative regulation of protein modification by small protein conjugation or removal Gene Set

From GO Biological Process Annotations 2025

genes participating in the negative regulation of protein modification by small protein conjugation or removal biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-arginine modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-arginine modification biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-threonine modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-threonine modification biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-serine modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-serine modification biological process from the curated GO Biological Process Annotations 2025 dataset.

regulation of protein modification process Gene Set

From GO Biological Process Annotations 2025

genes participating in the regulation of protein modification process biological process from the curated GO Biological Process Annotations 2025 dataset.

protein modification by small protein conjugation or removal Gene Set

From GO Biological Process Annotations 2025

genes participating in the protein modification by small protein conjugation or removal biological process from the curated GO Biological Process Annotations 2025 dataset.

DNA modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the DNA modification biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-glycine modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-glycine modification biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-tyrosine modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-tyrosine modification biological process from the curated GO Biological Process Annotations 2025 dataset.

C-terminal protein amino acid modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the C-terminal protein amino acid modification biological process from the curated GO Biological Process Annotations 2025 dataset.

tRNA wobble base modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the tRNA wobble base modification biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-amino acid modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-amino acid modification biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-cysteine modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-cysteine modification biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-glutamine modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-glutamine modification biological process from the curated GO Biological Process Annotations 2025 dataset.

modification of postsynaptic structure Gene Set

From GO Biological Process Annotations 2025

genes participating in the modification of postsynaptic structure biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-proline modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-proline modification biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-aspartic acid modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-aspartic acid modification biological process from the curated GO Biological Process Annotations 2025 dataset.

modification-dependent macromolecule catabolic process Gene Set

From GO Biological Process Annotations 2025

genes participating in the modification-dependent macromolecule catabolic process biological process from the curated GO Biological Process Annotations 2025 dataset.

lipid modification by small protein conjugation Gene Set

From GO Biological Process Annotations 2025

genes participating in the lipid modification by small protein conjugation biological process from the curated GO Biological Process Annotations 2025 dataset.

peptidyl-histidine modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the peptidyl-histidine modification biological process from the curated GO Biological Process Annotations 2025 dataset.

charged-tRNA amino acid modification Gene Set

From GO Biological Process Annotations 2025

genes participating in the charged-tRNA amino acid modification biological process from the curated GO Biological Process Annotations 2025 dataset.

poly-ADP-D-ribose modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2025

genes performing the poly-ADP-D-ribose modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2025 dataset.

polyubiquitin modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2025

genes performing the polyubiquitin modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2025 dataset.

ADP-D-ribose modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2025

genes performing the ADP-D-ribose modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2025 dataset.

K48-linked polyubiquitin modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2025

genes performing the K48-linked polyubiquitin modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2025 dataset.

K6-linked polyubiquitin modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2025

genes performing the K6-linked polyubiquitin modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2025 dataset.

K63-linked polyubiquitin modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2025

genes performing the K63-linked polyubiquitin modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2025 dataset.

K11-linked polyubiquitin modification-dependent protein binding Gene Set

From GO Molecular Function Annotations 2025

genes performing the K11-linked polyubiquitin modification-dependent protein binding molecular function from the curated GO Molecular Function Annotations 2025 dataset.

Chromatin modification and transcriptional regulation 1 Gene Set

From CM4AI U2OS Cell Map Protein Localization Assemblies

proteins comprising Chromatin modification and transcriptional regulation 1 assembly using integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.

Chromatin modification and transcriptional regulation 2 Gene Set

From CM4AI U2OS Cell Map Protein Localization Assemblies

proteins comprising Chromatin modification and transcriptional regulation 2 assembly using integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.

Regulation of gene expression and protein modification Gene Set

From CM4AI U2OS Cell Map Protein Localization Assemblies

proteins comprising Regulation of gene expression and protein modification assembly using integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.

double stranded rna induced gene expression Gene Set

From Biocarta Pathways

proteins participating in the double stranded rna induced gene expression pathway from the Biocarta Pathways dataset.

rna polymerase iii transcription Gene Set

From Biocarta Pathways

proteins participating in the rna polymerase iii transcription pathway from the Biocarta Pathways dataset.

overview of telomerase rna component gene hterc transcriptional regulation Gene Set

From Biocarta Pathways

proteins participating in the overview of telomerase rna component gene hterc transcriptional regulation pathway from the Biocarta Pathways dataset.

dna-directed rna polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna-directed rna polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

rna polymerase iii transcription factor complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the rna polymerase iii transcription factor complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna-directed rna polymerase ii, core complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna-directed rna polymerase ii, core complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

rna polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the rna polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

rna cap binding complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the rna cap binding complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

rna polymerase ii transcription factor complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the rna polymerase ii transcription factor complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

rna polymerase i transcription factor complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the rna polymerase i transcription factor complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna-directed rna polymerase i complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna-directed rna polymerase i complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

rna polymerase i core factor complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the rna polymerase i core factor complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

nuclear dna-directed rna polymerase complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the nuclear dna-directed rna polymerase complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna-directed rna polymerase iii complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna-directed rna polymerase iii complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna-directed rna polymerase ii, holoenzyme Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the dna-directed rna polymerase ii, holoenzyme cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

rna polymerase ii transcription repressor complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the rna polymerase ii transcription repressor complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

nuclear rna export factor complex Gene Set

From COMPARTMENTS Curated Protein Localization Evidence Scores

proteins localized to the nuclear rna export factor complex cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.

dna-directed rna polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna-directed rna polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

rna viral genome Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the rna viral genome cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

rna cap binding complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the rna cap binding complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

protein-dna-rna complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the protein-dna-rna complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

rna polymerase ii transcription factor complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the rna polymerase ii transcription factor complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

rna polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the rna polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna-directed rna polymerase v complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna-directed rna polymerase v complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

nuclear dna-directed rna polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the nuclear dna-directed rna polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

plastid-encoded plastid rna polymerase complex b Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the plastid-encoded plastid rna polymerase complex b cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

plastid-encoded plastid rna polymerase complex a Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the plastid-encoded plastid rna polymerase complex a cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

plastid-encoded plastid rna polymerase complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the plastid-encoded plastid rna polymerase complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

dna-directed rna polymerase ii, holoenzyme Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the dna-directed rna polymerase ii, holoenzyme cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

rna nuclear export complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the rna nuclear export complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

rna polymerase ii transcription repressor complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the rna polymerase ii transcription repressor complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

nuclear rna export factor complex Gene Set

From COMPARTMENTS Text-mining Protein Localization Evidence Scores

proteins co-occuring with the nuclear rna export factor complex cellular component in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.

Exon junction complex (EIF4A3-MLN51-MAGOH-Y14), RNA-protein complex Gene Set

From CORUM Protein Complexes

proteins in the Exon junction complex (EIF4A3-MLN51-MAGOH-Y14), RNA-protein complex protein complex from the CORUM Protein Complexes dataset.

RNA polymerase II complex, chromatin structure modifying Gene Set

From CORUM Protein Complexes

proteins in the RNA polymerase II complex, chromatin structure modifying protein complex from the CORUM Protein Complexes dataset.

RNA polymerase II complex (CBP, PCAF, RPB1, BAF47, CYCC, CDK8), chromatin structure modifying Gene Set

From CORUM Protein Complexes

proteins in the RNA polymerase II complex (CBP, PCAF, RPB1, BAF47, CYCC, CDK8), chromatin structure modifying protein complex from the CORUM Protein Complexes dataset.

RNA endonuclease (SEN2deltaEx8, SEN54, CLP1) Gene Set

From CORUM Protein Complexes

proteins in the RNA endonuclease (SEN2deltaEx8, SEN54, CLP1) protein complex from the CORUM Protein Complexes dataset.

BRCA1-core RNA polymerase II complex Gene Set

From CORUM Protein Complexes

proteins in the BRCA1-core RNA polymerase II complex protein complex from the CORUM Protein Complexes dataset.

RNA polymerase II (RNAPII) Gene Set

From CORUM Protein Complexes

proteins in the RNA polymerase II (RNAPII) protein complex from the CORUM Protein Complexes dataset.

SNAPc (small nuclear RNA-activating protein) complex Gene Set

From CORUM Protein Complexes

proteins in the SNAPc (small nuclear RNA-activating protein) complex protein complex from the CORUM Protein Complexes dataset.

Exon junction complex, EIF4A3-MLN51-MAGOH-Y14 (RNA-protein complex) Gene Set

From CORUM Protein Complexes

proteins in the Exon junction complex, EIF4A3-MLN51-MAGOH-Y14 (RNA-protein complex) protein complex from the CORUM Protein Complexes dataset.

RNA polymerase II complex, incomplete (CDK8 complex), chromatin structure modifying Gene Set

From CORUM Protein Complexes

proteins in the RNA polymerase II complex, incomplete (CDK8 complex), chromatin structure modifying protein complex from the CORUM Protein Complexes dataset.

RNA pol II containing coactivator complex Tat-SF Gene Set

From CORUM Protein Complexes

proteins in the RNA pol II containing coactivator complex Tat-SF protein complex from the CORUM Protein Complexes dataset.

RNA polymerase II complex, incomplete (CBP, RPBI, PCAF, BAF47), chromatin structure modifying Gene Set

From CORUM Protein Complexes

proteins in the RNA polymerase II complex, incomplete (CBP, RPBI, PCAF, BAF47), chromatin structure modifying protein complex from the CORUM Protein Complexes dataset.

RNA-induced silencing complex, RISC Gene Set

From CORUM Protein Complexes

proteins in the RNA-induced silencing complex, RISC protein complex from the CORUM Protein Complexes dataset.

RNA polymerase II complex (RPB1, RAP74, CDK8, CYCC, SRB7, BAF190, BAF47), chromatin structure modifying Gene Set

From CORUM Protein Complexes

proteins in the RNA polymerase II complex (RPB1, RAP74, CDK8, CYCC, SRB7, BAF190, BAF47), chromatin structure modifying protein complex from the CORUM Protein Complexes dataset.

RNA polymerase II core complex Gene Set

From CORUM Protein Complexes

proteins in the RNA polymerase II core complex protein complex from the CORUM Protein Complexes dataset.

BRCA1-RNA polymerase II complex Gene Set

From CORUM Protein Complexes

proteins in the BRCA1-RNA polymerase II complex protein complex from the CORUM Protein Complexes dataset.

RNA polymerase II holoenzyme complex Gene Set

From CORUM Protein Complexes

proteins in the RNA polymerase II holoenzyme complex protein complex from the CORUM Protein Complexes dataset.

RNA Cap Analogs Gene Set

From CTD Gene-Chemical Interactions

genes/proteins interacting with the chemical RNA Cap Analogs from the curated CTD Gene-Chemical Interactions dataset.

hiv-rna and cellular hiv-dna levels Gene Set

From GAD Gene-Disease Associations

genes associated with the disease hiv-rna and cellular hiv-dna levels in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

rna expression of carboxylesterases 1 and 2. Gene Set

From GAD Gene-Disease Associations

genes associated with the disease rna expression of carboxylesterases 1 and 2. in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

reduced levels of von willebrand factor messenger rna Gene Set

From GAD Gene-Disease Associations

genes associated with the disease reduced levels of von willebrand factor messenger rna in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.

rna Gene Set

From GeneRIF Biological Term Annotations

genes co-occuring with the biological term rna in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.

RNA helicase p68_KD_GDS2152_626_mouse_skeletal muscle cells Gene Set

From GEO Signatures of Differentially Expressed Genes for Gene Perturbations

genes differentially expressed following the RNA helicase p68_KD_GDS2152_626_mouse_skeletal muscle cells gene perturbation from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.

RNA helicase p68_KD_GDS2152_625_mouse_skeletal muscle cells Gene Set

From GEO Signatures of Differentially Expressed Genes for Gene Perturbations

genes differentially expressed following the RNA helicase p68_KD_GDS2152_625_mouse_skeletal muscle cells gene perturbation from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.

negative regulation of rna export from nucleus Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of rna export from nucleus biological process from the curated GO Biological Process Annotations 2015 dataset.

viral rna genome replication Gene Set

From GO Biological Process Annotations 2015

genes participating in the viral rna genome replication biological process from the curated GO Biological Process Annotations 2015 dataset.

rna stabilization Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna stabilization biological process from the curated GO Biological Process Annotations 2015 dataset.

transcription elongation from rna polymerase iii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the transcription elongation from rna polymerase iii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of rna biosynthetic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of rna biosynthetic process biological process from the curated GO Biological Process Annotations 2015 dataset.

rna biosynthetic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna biosynthetic process biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter involved in heart development Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter involved in heart development biological process from the curated GO Biological Process Annotations 2015 dataset.

removal of rna primer involved in mitotic dna replication Gene Set

From GO Biological Process Annotations 2015

genes participating in the removal of rna primer involved in mitotic dna replication biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of transcription from rna polymerase ii promoter by glucose Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of transcription from rna polymerase ii promoter by glucose biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter involved in definitive endodermal cell fate specification Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter involved in definitive endodermal cell fate specification biological process from the curated GO Biological Process Annotations 2015 dataset.

trna transcription from rna polymerase iii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the trna transcription from rna polymerase iii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of rna polymerase ii transcriptional preinitiation complex assembly Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of rna polymerase ii transcriptional preinitiation complex assembly biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of transcription from rna polymerase ii promoter in response to endoplasmic reticulum stress Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of transcription from rna polymerase ii promoter in response to endoplasmic reticulum stress biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of termination of rna polymerase ii transcription, poly(a)-coupled Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of termination of rna polymerase ii transcription, poly(a)-coupled biological process from the curated GO Biological Process Annotations 2015 dataset.

transcription initiation from rna polymerase iii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the transcription initiation from rna polymerase iii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

rna polymerase ii transcriptional preinitiation complex assembly Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna polymerase ii transcriptional preinitiation complex assembly biological process from the curated GO Biological Process Annotations 2015 dataset.

snrna transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the snrna transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

production of sirna involved in rna interference Gene Set

From GO Biological Process Annotations 2015

genes participating in the production of sirna involved in rna interference biological process from the curated GO Biological Process Annotations 2015 dataset.

transcription-dependent tethering of rna polymerase ii gene dna at nuclear periphery Gene Set

From GO Biological Process Annotations 2015

genes participating in the transcription-dependent tethering of rna polymerase ii gene dna at nuclear periphery biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of gene silencing by rna Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of gene silencing by rna biological process from the curated GO Biological Process Annotations 2015 dataset.

rna interference Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna interference biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter involved in smooth muscle cell differentiation Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter involved in smooth muscle cell differentiation biological process from the curated GO Biological Process Annotations 2015 dataset.

rna phosphodiester bond hydrolysis, endonucleolytic Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna phosphodiester bond hydrolysis, endonucleolytic biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of production of sirna involved in rna interference Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of production of sirna involved in rna interference biological process from the curated GO Biological Process Annotations 2015 dataset.

rna splicing, via transesterification reactions Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna splicing, via transesterification reactions biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter by galactose Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter by galactose biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of gene silencing by rna Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of gene silencing by rna biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of termination of rna polymerase ii transcription, poly(a)-coupled Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of termination of rna polymerase ii transcription, poly(a)-coupled biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of rna stability Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of rna stability biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of rna splicing Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of rna splicing biological process from the curated GO Biological Process Annotations 2015 dataset.

rna destabilization Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna destabilization biological process from the curated GO Biological Process Annotations 2015 dataset.

oxidative rna demethylation Gene Set

From GO Biological Process Annotations 2015

genes participating in the oxidative rna demethylation biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of transcription elongation from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of transcription elongation from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

rna surveillance Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna surveillance biological process from the curated GO Biological Process Annotations 2015 dataset.

rna catabolic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna catabolic process biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter in response to calcium ion Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter in response to calcium ion biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter during mitosis Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter during mitosis biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of single stranded viral rna replication via double stranded dna intermediate Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of single stranded viral rna replication via double stranded dna intermediate biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter involved in myocardial precursor cell differentiation Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter involved in myocardial precursor cell differentiation biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of rna polymerase ii regulatory region sequence-specific dna binding Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of rna polymerase ii regulatory region sequence-specific dna binding biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of transcription from rna polymerase ii promoter during mitosis Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of transcription from rna polymerase ii promoter during mitosis biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter by galactose Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter by galactose biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of rna interference Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of rna interference biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of rna splicing Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of rna splicing biological process from the curated GO Biological Process Annotations 2015 dataset.

rna polymerase i transcriptional preinitiation complex assembly at the promoter for the nuclear large rrna transcript Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna polymerase i transcriptional preinitiation complex assembly at the promoter for the nuclear large rrna transcript biological process from the curated GO Biological Process Annotations 2015 dataset.

rna phosphodiester bond hydrolysis, exonucleolytic Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna phosphodiester bond hydrolysis, exonucleolytic biological process from the curated GO Biological Process Annotations 2015 dataset.

rna-dependent dna replication Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna-dependent dna replication biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of rna polymerase ii regulatory region sequence-specific dna binding Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of rna polymerase ii regulatory region sequence-specific dna binding biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of phosphorylation of rna polymerase ii c-terminal domain serine 2 residues Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of phosphorylation of rna polymerase ii c-terminal domain serine 2 residues biological process from the curated GO Biological Process Annotations 2015 dataset.

rna repair Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna repair biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase iii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase iii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

transcription initiation from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the transcription initiation from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

rna replication Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna replication biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter involved in unfolded protein response Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter involved in unfolded protein response biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter, mitotic Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter, mitotic biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of pri-mirna transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of pri-mirna transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

termination of rna polymerase ii transcription Gene Set

From GO Biological Process Annotations 2015

genes participating in the termination of rna polymerase ii transcription biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of glycolytic process by negative regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of glycolytic process by negative regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

single stranded viral rna replication via double stranded dna intermediate Gene Set

From GO Biological Process Annotations 2015

genes participating in the single stranded viral rna replication via double stranded dna intermediate biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter in response to stress Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter in response to stress biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of gluconeogenesis by positive regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of gluconeogenesis by positive regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of lipid transport by regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of lipid transport by regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase i promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase i promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter involved in spinal cord motor neuron fate specification Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter involved in spinal cord motor neuron fate specification biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of rna metabolic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of rna metabolic process biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter by glucose Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter by glucose biological process from the curated GO Biological Process Annotations 2015 dataset.

transcription elongation from rna polymerase i promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the transcription elongation from rna polymerase i promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

transcription elongation from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the transcription elongation from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription initiation from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription initiation from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of cellular ketone metabolic process by negative regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of cellular ketone metabolic process by negative regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of transcription from rna polymerase ii promoter in response to hypoxia Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of transcription from rna polymerase ii promoter in response to hypoxia biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of single stranded viral rna replication via double stranded dna intermediate Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of single stranded viral rna replication via double stranded dna intermediate biological process from the curated GO Biological Process Annotations 2015 dataset.

rna polyadenylation Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna polyadenylation biological process from the curated GO Biological Process Annotations 2015 dataset.

rna polymerase i transcriptional preinitiation complex assembly Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna polymerase i transcriptional preinitiation complex assembly biological process from the curated GO Biological Process Annotations 2015 dataset.

transcription, rna-templated Gene Set

From GO Biological Process Annotations 2015

genes participating in the transcription, rna-templated biological process from the curated GO Biological Process Annotations 2015 dataset.

snrna transcription from rna polymerase iii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the snrna transcription from rna polymerase iii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

recruitment of mrna capping enzyme to rna polymerase ii holoenzyme complex Gene Set

From GO Biological Process Annotations 2015

genes participating in the recruitment of mrna capping enzyme to rna polymerase ii holoenzyme complex biological process from the curated GO Biological Process Annotations 2015 dataset.

recruitment of 3'-end processing factors to rna polymerase ii holoenzyme complex Gene Set

From GO Biological Process Annotations 2015

genes participating in the recruitment of 3'-end processing factors to rna polymerase ii holoenzyme complex biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter in response to arsenic-containing substance Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter in response to arsenic-containing substance biological process from the curated GO Biological Process Annotations 2015 dataset.

small rna loading onto risc Gene Set

From GO Biological Process Annotations 2015

genes participating in the small rna loading onto risc biological process from the curated GO Biological Process Annotations 2015 dataset.

nitrogen catabolite regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the nitrogen catabolite regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter involved in heart development Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter involved in heart development biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of cell-cell adhesion by negative regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of cell-cell adhesion by negative regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

rna transport Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna transport biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter in response to hypoxia Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter in response to hypoxia biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription initiation from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription initiation from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

rna secondary structure unwinding Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna secondary structure unwinding biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of production of sirna involved in rna interference Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of production of sirna involved in rna interference biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of glycolytic by positive regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of glycolytic by positive regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter involved in kidney development Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter involved in kidney development biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of transcription initiation from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of transcription initiation from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

mrna transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the mrna transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter involved in mesonephros development Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter involved in mesonephros development biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of rna metabolic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of rna metabolic process biological process from the curated GO Biological Process Annotations 2015 dataset.

rna 5'-end processing Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna 5'-end processing biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter in response to hypoxia Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter in response to hypoxia biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter involved in somatic motor neuron fate commitment Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter involved in somatic motor neuron fate commitment biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of transcription from rna polymerase ii promoter involved in smooth muscle cell differentiation Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of transcription from rna polymerase ii promoter involved in smooth muscle cell differentiation biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of rna catabolic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of rna catabolic process biological process from the curated GO Biological Process Annotations 2015 dataset.

rna methylation Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna methylation biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase i promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase i promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

7-methylguanosine rna capping Gene Set

From GO Biological Process Annotations 2015

genes participating in the 7-methylguanosine rna capping biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of transcription of nuclear large rrna transcript from rna polymerase i promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of transcription of nuclear large rrna transcript from rna polymerase i promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of rna polymerase ii transcriptional preinitiation complex assembly Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of rna polymerase ii transcriptional preinitiation complex assembly biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of cellular ketone metabolic process by positive regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of cellular ketone metabolic process by positive regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

dna replication, synthesis of rna primer Gene Set

From GO Biological Process Annotations 2015

genes participating in the dna replication, synthesis of rna primer biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter involved in ventral spinal cord interneuron specification Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter involved in ventral spinal cord interneuron specification biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of phosphorylation of rna polymerase ii c-terminal domain Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of phosphorylation of rna polymerase ii c-terminal domain biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription of nuclear large rrna transcript from rna polymerase i promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription of nuclear large rrna transcript from rna polymerase i promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter involved in spinal cord association neuron specification Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter involved in spinal cord association neuron specification biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of glycolytic process by regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of glycolytic process by regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

conversion of ds sirna to ss sirna involved in rna interference Gene Set

From GO Biological Process Annotations 2015

genes participating in the conversion of ds sirna to ss sirna involved in rna interference biological process from the curated GO Biological Process Annotations 2015 dataset.

termination of rna polymerase iii transcription Gene Set

From GO Biological Process Annotations 2015

genes participating in the termination of rna polymerase iii transcription biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of rna export from nucleus Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of rna export from nucleus biological process from the curated GO Biological Process Annotations 2015 dataset.

oxidative single-stranded rna demethylation Gene Set

From GO Biological Process Annotations 2015

genes participating in the oxidative single-stranded rna demethylation biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of transcription from rna polymerase ii promoter in response to uv-induced dna damage Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of transcription from rna polymerase ii promoter in response to uv-induced dna damage biological process from the curated GO Biological Process Annotations 2015 dataset.

transcription of nuclear large rrna transcript from rna polymerase i promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the transcription of nuclear large rrna transcript from rna polymerase i promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter involved in cellular response to chemical stimulus Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter involved in cellular response to chemical stimulus biological process from the curated GO Biological Process Annotations 2015 dataset.

rna phosphodiester bond hydrolysis Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna phosphodiester bond hydrolysis biological process from the curated GO Biological Process Annotations 2015 dataset.

dna replication, removal of rna primer Gene Set

From GO Biological Process Annotations 2015

genes participating in the dna replication, removal of rna primer biological process from the curated GO Biological Process Annotations 2015 dataset.

transcription from rna polymerase i promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the transcription from rna polymerase i promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter in response to endoplasmic reticulum stress Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter in response to endoplasmic reticulum stress biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter in response to uv-induced dna damage Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter in response to uv-induced dna damage biological process from the curated GO Biological Process Annotations 2015 dataset.

rna 3'-end processing Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna 3'-end processing biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of rna splicing Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of rna splicing biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of transcription from rna polymerase i promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of transcription from rna polymerase i promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

posttranscriptional gene silencing by rna Gene Set

From GO Biological Process Annotations 2015

genes participating in the posttranscriptional gene silencing by rna biological process from the curated GO Biological Process Annotations 2015 dataset.

rna metabolic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna metabolic process biological process from the curated GO Biological Process Annotations 2015 dataset.

carbon catabolite repression of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the carbon catabolite repression of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription elongation from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription elongation from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

nitrogen catabolite activation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the nitrogen catabolite activation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of rna metabolic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of rna metabolic process biological process from the curated GO Biological Process Annotations 2015 dataset.

sirna loading onto risc involved in rna interference Gene Set

From GO Biological Process Annotations 2015

genes participating in the sirna loading onto risc involved in rna interference biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of rna export from nucleus Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of rna export from nucleus biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of pri-mirna transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of pri-mirna transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter in response to arsenic-containing substance Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter in response to arsenic-containing substance biological process from the curated GO Biological Process Annotations 2015 dataset.

rna capping Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna capping biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter in response to iron Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter in response to iron biological process from the curated GO Biological Process Annotations 2015 dataset.

5s class rrna transcription from rna polymerase iii type 1 promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the 5s class rrna transcription from rna polymerase iii type 1 promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription of nuclear large rrna transcript from rna polymerase i promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription of nuclear large rrna transcript from rna polymerase i promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of g1/s transition of mitotic cell cycle by negative regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of g1/s transition of mitotic cell cycle by negative regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of lipid transport by negative regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of lipid transport by negative regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter in response to oxidative stress Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter in response to oxidative stress biological process from the curated GO Biological Process Annotations 2015 dataset.

transcription from rna polymerase iii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the transcription from rna polymerase iii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of rna biosynthetic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of rna biosynthetic process biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of lipid transport by positive regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of lipid transport by positive regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

rna (guanine-n7)-methylation Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna (guanine-n7)-methylation biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of carbohydrate metabolic process by regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of carbohydrate metabolic process by regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of rna polymerase ii transcriptional preinitiation complex assembly Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of rna polymerase ii transcriptional preinitiation complex assembly biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase iii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase iii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of rna biosynthetic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of rna biosynthetic process biological process from the curated GO Biological Process Annotations 2015 dataset.

rna splicing, via transesterification reactions with bulged adenosine as nucleophile Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna splicing, via transesterification reactions with bulged adenosine as nucleophile biological process from the curated GO Biological Process Annotations 2015 dataset.

rna splicing Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna splicing biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter in response to stress Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter in response to stress biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of rna interference Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of rna interference biological process from the curated GO Biological Process Annotations 2015 dataset.

dephosphorylation of rna polymerase ii c-terminal domain Gene Set

From GO Biological Process Annotations 2015

genes participating in the dephosphorylation of rna polymerase ii c-terminal domain biological process from the curated GO Biological Process Annotations 2015 dataset.

rna splicing, via endonucleolytic cleavage and ligation Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna splicing, via endonucleolytic cleavage and ligation biological process from the curated GO Biological Process Annotations 2015 dataset.

transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

gene silencing by rna Gene Set

From GO Biological Process Annotations 2015

genes participating in the gene silencing by rna biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of phosphorylation of rna polymerase ii c-terminal domain serine 2 residues Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of phosphorylation of rna polymerase ii c-terminal domain serine 2 residues biological process from the curated GO Biological Process Annotations 2015 dataset.

rna import into mitochondrion Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna import into mitochondrion biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription elongation from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription elongation from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

phosphorylation of rna polymerase ii c-terminal domain Gene Set

From GO Biological Process Annotations 2015

genes participating in the phosphorylation of rna polymerase ii c-terminal domain biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter involved in forebrain neuron fate commitment Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter involved in forebrain neuron fate commitment biological process from the curated GO Biological Process Annotations 2015 dataset.

rna import into nucleus Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna import into nucleus biological process from the curated GO Biological Process Annotations 2015 dataset.

negative stranded viral rna replication Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative stranded viral rna replication biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of transcription from rna polymerase iii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of transcription from rna polymerase iii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

transcription initiation from rna polymerase i promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the transcription initiation from rna polymerase i promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

polyadenylation-dependent rna catabolic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the polyadenylation-dependent rna catabolic process biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter involved in determination of left/right symmetry Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter involved in determination of left/right symmetry biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of single stranded viral rna replication via double stranded dna intermediate Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of single stranded viral rna replication via double stranded dna intermediate biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of rna interference Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of rna interference biological process from the curated GO Biological Process Annotations 2015 dataset.

establishment of rna localization Gene Set

From GO Biological Process Annotations 2015

genes participating in the establishment of rna localization biological process from the curated GO Biological Process Annotations 2015 dataset.

nuclear rna surveillance Gene Set

From GO Biological Process Annotations 2015

genes participating in the nuclear rna surveillance biological process from the curated GO Biological Process Annotations 2015 dataset.

negative regulation of transcription from rna polymerase ii promoter in response to stress Gene Set

From GO Biological Process Annotations 2015

genes participating in the negative regulation of transcription from rna polymerase ii promoter in response to stress biological process from the curated GO Biological Process Annotations 2015 dataset.

rna export from nucleus Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna export from nucleus biological process from the curated GO Biological Process Annotations 2015 dataset.

targeting of mrna for destruction involved in rna interference Gene Set

From GO Biological Process Annotations 2015

genes participating in the targeting of mrna for destruction involved in rna interference biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of gluconeogenesis by regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of gluconeogenesis by regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

cytoplasmic rna surveillance Gene Set

From GO Biological Process Annotations 2015

genes participating in the cytoplasmic rna surveillance biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter involved in myocardial precursor cell differentiation Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter involved in myocardial precursor cell differentiation biological process from the curated GO Biological Process Annotations 2015 dataset.

rna localization Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna localization biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of cellular ketone metabolic process by regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of cellular ketone metabolic process by regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of transcription from rna polymerase ii promoter involved in norepinephrine biosynthetic process Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of transcription from rna polymerase ii promoter involved in norepinephrine biosynthetic process biological process from the curated GO Biological Process Annotations 2015 dataset.

positive regulation of phosphorylation of rna polymerase ii c-terminal domain Gene Set

From GO Biological Process Annotations 2015

genes participating in the positive regulation of phosphorylation of rna polymerase ii c-terminal domain biological process from the curated GO Biological Process Annotations 2015 dataset.

carbon catabolite regulation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the carbon catabolite regulation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter in response to oxidative stress Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter in response to oxidative stress biological process from the curated GO Biological Process Annotations 2015 dataset.

regulation of transcription from rna polymerase ii promoter by glucose Gene Set

From GO Biological Process Annotations 2015

genes participating in the regulation of transcription from rna polymerase ii promoter by glucose biological process from the curated GO Biological Process Annotations 2015 dataset.

carbon catabolite activation of transcription from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the carbon catabolite activation of transcription from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

termination of rna polymerase i transcription Gene Set

From GO Biological Process Annotations 2015

genes participating in the termination of rna polymerase i transcription biological process from the curated GO Biological Process Annotations 2015 dataset.

maintenance of transcriptional fidelity during dna-templated transcription elongation from rna polymerase ii promoter Gene Set

From GO Biological Process Annotations 2015

genes participating in the maintenance of transcriptional fidelity during dna-templated transcription elongation from rna polymerase ii promoter biological process from the curated GO Biological Process Annotations 2015 dataset.

rna processing Gene Set

From GO Biological Process Annotations 2015

genes participating in the rna processing biological process from the curated GO Biological Process Annotations 2015 dataset.

viral rna genome packaging Gene Set

From GO Biological Process Annotations 2015

genes participating in the viral rna genome packaging biological process from the curated GO Biological Process Annotations 2015 dataset.

dna-directed rna polymerase complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the dna-directed rna polymerase complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

rna polymerase iii transcription factor complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the rna polymerase iii transcription factor complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

dna-directed rna polymerase ii, core complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the dna-directed rna polymerase ii, core complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

rna polymerase complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the rna polymerase complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

rna cap binding complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the rna cap binding complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

rna polymerase ii transcription factor complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the rna polymerase ii transcription factor complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

rna polymerase i transcription factor complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the rna polymerase i transcription factor complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

rna polymerase transcription factor sl1 complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the rna polymerase transcription factor sl1 complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

dna-directed rna polymerase i complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the dna-directed rna polymerase i complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

rna polymerase i core factor complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the rna polymerase i core factor complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

nuclear dna-directed rna polymerase complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the nuclear dna-directed rna polymerase complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

dna-directed rna polymerase iii complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the dna-directed rna polymerase iii complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

dna-directed rna polymerase ii, holoenzyme Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the dna-directed rna polymerase ii, holoenzyme cellular component from the curated GO Cellular Component Annotations 2015 dataset.

rna polymerase ii transcription repressor complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the rna polymerase ii transcription repressor complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

nuclear rna export factor complex Gene Set

From GO Cellular Component Annotations 2015

proteins localized to the nuclear rna export factor complex cellular component from the curated GO Cellular Component Annotations 2015 dataset.

rna polymerase i transcription factor recruiting transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase i transcription factor recruiting transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase iii regulatory region dna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase iii regulatory region dna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase i regulatory region dna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase i regulatory region dna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii basal transcription factor binding transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii basal transcription factor binding transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

double-stranded rna-specific ribonuclease activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the double-stranded rna-specific ribonuclease activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna stem-loop binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna stem-loop binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

dna/rna helicase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the dna/rna helicase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

atp-dependent rna helicase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the atp-dependent rna helicase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase iii activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase iii activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase iii core binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase iii core binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

ligand-activated sequence-specific dna binding rna polymerase ii transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the ligand-activated sequence-specific dna binding rna polymerase ii transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii transcription cofactor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii transcription cofactor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna ligase (atp) activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna ligase (atp) activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

3'-5' rna helicase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the 3'-5' rna helicase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii sequence-specific dna binding transcription factor binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii sequence-specific dna binding transcription factor binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase i core element sequence-specific dna binding transcription factor recruiting transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase i core element sequence-specific dna binding transcription factor recruiting transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase i core element sequence-specific dna binding transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase i core element sequence-specific dna binding transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna-directed dna polymerase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna-directed dna polymerase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

ribonuclease p rna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the ribonuclease p rna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

7s rna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the 7s rna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

double-stranded rna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the double-stranded rna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii core promoter sequence-specific dna binding transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii core promoter sequence-specific dna binding transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

g-quadruplex rna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the g-quadruplex rna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

double-stranded rna adenosine deaminase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the double-stranded rna adenosine deaminase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii regulatory region sequence-specific dna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii regulatory region sequence-specific dna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii core promoter proximal region sequence-specific dna binding transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii core promoter proximal region sequence-specific dna binding transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii transcription coactivator activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii transcription coactivator activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii repressing transcription factor binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii repressing transcription factor binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii transcription regulatory region sequence-specific dna binding transcription factor activity involved in negative regulation of transcription Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii transcription regulatory region sequence-specific dna binding transcription factor activity involved in negative regulation of transcription molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii transcription factor binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii transcription factor binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

ligand-activated rna polymerase ii transcription factor binding transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the ligand-activated rna polymerase ii transcription factor binding transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii transcription regulatory region sequence-specific dna binding transcription factor activity involved in positive regulation of transcription Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii transcription regulatory region sequence-specific dna binding transcription factor activity involved in positive regulation of transcription molecular function from the curated GO Molecular Function Annotations 2015 dataset.

poly(c) rna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the poly(c) rna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna 7-methylguanosine cap binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna 7-methylguanosine cap binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna-dependent atpase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna-dependent atpase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase i regulatory region sequence-specific dna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase i regulatory region sequence-specific dna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii core promoter proximal region sequence-specific dna binding transcription factor activity involved in positive regulation of transcription Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii core promoter proximal region sequence-specific dna binding transcription factor activity involved in positive regulation of transcription molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna uridylyltransferase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna uridylyltransferase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii core promoter sequence-specific dna binding transcription factor activity involved in preinitiation complex assembly Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii core promoter sequence-specific dna binding transcription factor activity involved in preinitiation complex assembly molecular function from the curated GO Molecular Function Annotations 2015 dataset.

atp-dependent 5'-3' dna/rna helicase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the atp-dependent 5'-3' dna/rna helicase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

sequence-specific transcription regulatory region dna binding rna polymerase ii transcription factor recruiting transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the sequence-specific transcription regulatory region dna binding rna polymerase ii transcription factor recruiting transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

glucocorticoid-activated rna polymerase ii transcription factor binding transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the glucocorticoid-activated rna polymerase ii transcription factor binding transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase iii transcription factor binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase iii transcription factor binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii basal transcription factor binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii basal transcription factor binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase i core element sequence-specific dna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase i core element sequence-specific dna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase iii type 3 promoter dna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase iii type 3 promoter dna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii transcription factor binding transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii transcription factor binding transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii core promoter sequence-specific dna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii core promoter sequence-specific dna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

sequence-specific dna binding rna polymerase ii transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the sequence-specific dna binding rna polymerase ii transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii regulatory region dna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii regulatory region dna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii distal enhancer sequence-specific dna binding transcription factor activity involved in positive regulation of transcription Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii distal enhancer sequence-specific dna binding transcription factor activity involved in positive regulation of transcription molecular function from the curated GO Molecular Function Annotations 2015 dataset.

sequence-specific dna binding rna polymerase recruiting transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the sequence-specific dna binding rna polymerase recruiting transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

poly(u) rna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the poly(u) rna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii distal enhancer sequence-specific dna binding transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii distal enhancer sequence-specific dna binding transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

dna-directed rna polymerase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the dna-directed rna polymerase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase i activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase i activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii transcription corepressor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii transcription corepressor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii core promoter proximal region sequence-specific dna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii core promoter proximal region sequence-specific dna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

n6-methyladenosine-containing rna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the n6-methyladenosine-containing rna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase core enzyme binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase core enzyme binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase iii type 1 promoter dna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase iii type 1 promoter dna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

atp-dependent 5'-3' rna helicase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the atp-dependent 5'-3' rna helicase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

tyrosyl-rna phosphodiesterase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the tyrosyl-rna phosphodiesterase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii activating transcription factor binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii activating transcription factor binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii distal enhancer sequence-specific dna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii distal enhancer sequence-specific dna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna ligase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna ligase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

oxidative rna demethylase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the oxidative rna demethylase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii core promoter proximal region sequence-specific dna binding transcription factor activity involved in negative regulation of transcription Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii core promoter proximal region sequence-specific dna binding transcription factor activity involved in negative regulation of transcription molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna-dna hybrid ribonuclease activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna-dna hybrid ribonuclease activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase i core binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase i core binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna guanylyltransferase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna guanylyltransferase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii transcription factor binding transcription factor activity involved in negative regulation of transcription Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii transcription factor binding transcription factor activity involved in negative regulation of transcription molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase i transcription factor binding transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase i transcription factor binding transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

dead/h-box rna helicase binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the dead/h-box rna helicase binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna transmembrane transporter activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna transmembrane transporter activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii core binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii core binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii intronic transcription regulatory region sequence-specific dna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii intronic transcription regulatory region sequence-specific dna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii transcription factor recruiting transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii transcription factor recruiting transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii carboxy-terminal domain kinase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii carboxy-terminal domain kinase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

telomeric template rna reverse transcriptase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the telomeric template rna reverse transcriptase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

poly(a) rna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the poly(a) rna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii transcription corepressor binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii transcription corepressor binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna cap binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna cap binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna pyrophosphohydrolase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna pyrophosphohydrolase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

basal rna polymerase ii transcription machinery binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the basal rna polymerase ii transcription machinery binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii distal enhancer sequence-specific dna binding transcription factor activity involved in negative regulation of transcription Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii distal enhancer sequence-specific dna binding transcription factor activity involved in negative regulation of transcription molecular function from the curated GO Molecular Function Annotations 2015 dataset.

sequence-specific dna binding rna polymerase i transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the sequence-specific dna binding rna polymerase i transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna-3'-phosphate cyclase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna-3'-phosphate cyclase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii transcription cofactor binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii transcription cofactor binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna trimethylguanosine synthase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna trimethylguanosine synthase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase i transcription factor binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase i transcription factor binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

single-stranded rna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the single-stranded rna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna methyltransferase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna methyltransferase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

telomeric rna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the telomeric rna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna lariat debranching enzyme activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna lariat debranching enzyme activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase ii transcription factor binding transcription factor activity involved in positive regulation of transcription Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase ii transcription factor binding transcription factor activity involved in positive regulation of transcription molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna polymerase iii type 2 promoter dna binding Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna polymerase iii type 2 promoter dna binding molecular function from the curated GO Molecular Function Annotations 2015 dataset.

atp-dependent dna/rna helicase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the atp-dependent dna/rna helicase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

5'-3' dna/rna helicase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the 5'-3' dna/rna helicase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

rna helicase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the rna helicase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

estrogen-activated sequence-specific dna binding rna polymerase ii transcription factor activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the estrogen-activated sequence-specific dna binding rna polymerase ii transcription factor activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

5'-3' rna helicase activity Gene Set

From GO Molecular Function Annotations 2015

genes performing the 5'-3' rna helicase activity molecular function from the curated GO Molecular Function Annotations 2015 dataset.

Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA binding protein Fox-1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA binding protein Fox-1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA 2-O ribose methyltransferase, substrate binding Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA 2-O ribose methyltransferase, substrate binding protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Nuclear RNA-splicing-associated protein, SR-25 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Nuclear RNA-splicing-associated protein, SR-25 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA-binding protein Lupus La Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA-binding protein Lupus La protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase, RpoA/D/Rpb3-type Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase, RpoA/D/Rpb3-type protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal RNA large subunit methyltransferase E Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal RNA large subunit methyltransferase E protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA 3'-terminal phosphate cyclase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA 3'-terminal phosphate cyclase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase subunit RPABC4/transcription elongation factor Spt4 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase subunit RPABC4/transcription elongation factor Spt4 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal protein S1, RNA-binding domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal protein S1, RNA-binding domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase II-associated protein 1, N-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase II-associated protein 1, N-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase subunit RPB10 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase subunit RPB10 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase, subunit H/Rpb5 C-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase, subunit H/Rpb5 C-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase II, Rpb4 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase II, Rpb4 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpc34 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpc34 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase II, heptapeptide repeat, eukaryotic Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase II, heptapeptide repeat, eukaryotic protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpc34-like Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpc34-like protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase, M/15kDa subunit Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase, M/15kDa subunit protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Putative RNA methyltransferase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Putative RNA methyltransferase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase, phage-type Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase, phage-type protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Zinc finger, double-stranded RNA binding Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Zinc finger, double-stranded RNA binding protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase II-binding domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase II-binding domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpb1, domain 4 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpb1, domain 4 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpb1, domain 5 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpb1, domain 5 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpb1, domain 6 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpb1, domain 6 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpb1, domain 7 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpb1, domain 7 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpb1, domain 1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpb1, domain 1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpb1, domain 3 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpb1, domain 3 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase, subunit H/Rpb5, conserved site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase, subunit H/Rpb5, conserved site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal RNA large subunit methyltransferase F-like Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal RNA large subunit methyltransferase F-like protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA recognition motif domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA recognition motif domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA 3'-terminal phosphate cyclase, insert domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA 3'-terminal phosphate cyclase, insert domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA-binding domain, S1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA-binding domain, S1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Putative RNA methylase domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Putative RNA methylase domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Exosome complex RNA-binding protein 1/RRP40/RRP4 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Exosome complex RNA-binding protein 1/RRP40/RRP4 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase, 14-18kDa subunit, conserved site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase, 14-18kDa subunit, conserved site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase subunit, RPB6/omega Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase subunit, RPB6/omega protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Poly(A) polymerase, RNA-binding domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Poly(A) polymerase, RNA-binding domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase I, Rpa2 specific Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase I, Rpa2 specific protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Nuclear RNA export factor Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Nuclear RNA export factor protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA/RNA-binding protein Alba-like Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA/RNA-binding protein Alba-like protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA recognition motif domain, eukaryote Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA recognition motif domain, eukaryote protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA methyltransferase TrmH family Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA methyltransferase TrmH family protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase III, subunit Rpc31 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase III, subunit Rpc31 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Plasminogen activator inhibitor 1 RNA-binding protein Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Plasminogen activator inhibitor 1 RNA-binding protein protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Pumilio RNA-binding repeat Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Pumilio RNA-binding repeat protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase III subunit Rpc5 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase III subunit Rpc5 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase I specific transcription initiation factor RRN3 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase I specific transcription initiation factor RRN3 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA-polymerase II-associated protein 3-like, C-terminal domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA-polymerase II-associated protein 3-like, C-terminal domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Small nuclear RNA activating complex subunit 2-like Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Small nuclear RNA activating complex subunit 2-like protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase III subunit RPC1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase III subunit RPC1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase III subunit RPC4 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase III subunit RPC4 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA-binding motif Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA-binding motif protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase, subunit C11/M/9 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase, subunit C11/M/9 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA/RNA non-specific endonuclease, active site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA/RNA non-specific endonuclease, active site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerases, subunit N, zinc binding site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerases, subunit N, zinc binding site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Small nuclear RNA activating complex (SNAPc), subunit SNAP43 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

ATP-dependent RNA helicase DEAD-box, conserved site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the ATP-dependent RNA helicase DEAD-box, conserved site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

3'-RNA ribose 2'-O-methyltransferase, Hen1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the 3'-RNA ribose 2'-O-methyltransferase, Hen1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpb2, domain 3 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpb2, domain 3 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA binding activity-knot of a chromodomain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA binding activity-knot of a chromodomain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Double-stranded RNA-specific adenosine deaminase (DRADA) Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Double-stranded RNA-specific adenosine deaminase (DRADA) protein domain from the InterPro Predicted Protein Domain Annotations dataset.

U3 small nucleolar RNA-associated protein 10 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the U3 small nucleolar RNA-associated protein 10 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA pol I, largest subunit Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA pol I, largest subunit protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal RNA small subunit methyltransferase H Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal RNA small subunit methyltransferase H protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Spermatid perinuclear RNA-binding protein Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Spermatid perinuclear RNA-binding protein protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase, 30-40kDa subunit, conserved site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase, 30-40kDa subunit, conserved site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase, subunit N/Rpb10 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase, subunit N/Rpb10 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Nuclear RNA export factor 3 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Nuclear RNA export factor 3 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Nuclear RNA export factor 5 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Nuclear RNA export factor 5 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase N-terminal domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase N-terminal domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal RNA-processing protein 14/surfeit locus protein 6, C-terminal domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal RNA-processing protein 14/surfeit locus protein 6, C-terminal domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA 3'-terminal phosphate cyclase type 1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA 3'-terminal phosphate cyclase type 1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase, subunit RPB6 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase, subunit RPB6 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase II, Rpb4, core Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase II, Rpb4, core protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase, insert domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase, insert domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Repressor of RNA polymerase III transcription Maf1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Repressor of RNA polymerase III transcription Maf1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase I, subunit RPA34.5 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase I, subunit RPA34.5 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA helicase UPF1, UPF2-interacting domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA helicase UPF1, UPF2-interacting domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA-induced silencing complex, nuclease component Tudor-SN Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA-induced silencing complex, nuclease component Tudor-SN protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpb7, N-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpb7, N-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA (C5-cytosine) methyltransferase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA (C5-cytosine) methyltransferase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed DNA/RNA polymerase mu Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed DNA/RNA polymerase mu protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA-recognition motif (RRM) Nup35-type domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA-recognition motif (RRM) Nup35-type domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

U3 small nucleolar RNA-associated protein 6 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the U3 small nucleolar RNA-associated protein 6 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase, subunit 2 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase, subunit 2 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA ligase/cyclic nucleotide phosphodiesterase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA ligase/cyclic nucleotide phosphodiesterase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase, Rpb5, N-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase, Rpb5, N-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal RNA adenine methylase transferase, N-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal RNA adenine methylase transferase, N-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal RNA methyltransferase, Spb1, C-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal RNA methyltransferase, Spb1, C-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase, subunit omega/K/RPB6 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase, subunit omega/K/RPB6 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase M, 15kDa subunit, conserved site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase M, 15kDa subunit, conserved site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Polyribonucleotide nucleotidyltransferase, RNA-binding domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Polyribonucleotide nucleotidyltransferase, RNA-binding domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase, subunit E/RPC8 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase, subunit E/RPC8 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Signal recognition particle, SRP72 subunit, RNA-binding Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Signal recognition particle, SRP72 subunit, RNA-binding protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA nucleotidylexotransferase (TdT) / DNA-directed DNA/RNA polymerase mu Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA nucleotidylexotransferase (TdT) / DNA-directed DNA/RNA polymerase mu protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA (C5-cytosine) methyltransferase, NOP2 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA (C5-cytosine) methyltransferase, NOP2 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase, alpha subunit Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase, alpha subunit protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal RNA adenine methyltransferase KsgA/Erm Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal RNA adenine methyltransferase KsgA/Erm protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Histone RNA stem-loop-binding protein SLBP1/SLBP2 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Histone RNA stem-loop-binding protein SLBP1/SLBP2 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA recognition motif, spliceosomal PrP8 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA recognition motif, spliceosomal PrP8 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Telomerase ribonucleoprotein complex - RNA-binding domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Telomerase ribonucleoprotein complex - RNA-binding domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase II accessory factor, Cdc73 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase II accessory factor, Cdc73 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

U3 small nucleolar RNA-associated protein 15, C-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the U3 small nucleolar RNA-associated protein 15, C-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA 3'-terminal phosphate cyclase-like, conserved site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA 3'-terminal phosphate cyclase-like, conserved site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Double-stranded RNA-binding domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Double-stranded RNA-binding domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase II transcription factor SIII, subunit A Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase II transcription factor SIII, subunit A protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase III subunit RPC82-related, helix-turn-helix Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase III subunit RPC82-related, helix-turn-helix protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Occludin/RNA polymerase II elongation factor, ELL domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Occludin/RNA polymerase II elongation factor, ELL domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA 3'-terminal phosphate cyclase type 2 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA 3'-terminal phosphate cyclase type 2 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA helicase, DEAD-box type, Q motif Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA helicase, DEAD-box type, Q motif protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase, N-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase, N-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal RNA assembly KRR1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal RNA assembly KRR1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase, Rpb8 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase, Rpb8 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase II-associated, Paf1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase II-associated, Paf1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA/RNA non-specific endonuclease Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA/RNA non-specific endonuclease protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase I, subunit A (TATA-binding protein-associated factor) Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase I, subunit A (TATA-binding protein-associated factor) protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA-binding motif protein 8 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA-binding motif protein 8 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase, helix hairpin domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase, helix hairpin domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase, beta subunit, protrusion Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase, beta subunit, protrusion protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Probable ATP-dependent RNA helicase DDX11/DDX12 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Probable ATP-dependent RNA helicase DDX11/DDX12 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA-binding protein 6 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA-binding protein 6 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase II subunit GRINL1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase II subunit GRINL1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA-binding S4 domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA-binding S4 domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpb2, OB-fold Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpb2, OB-fold protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA/RNA-binding domain, Est1-type Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA/RNA-binding domain, Est1-type protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase, subunit 2, domain 6 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase, subunit 2, domain 6 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpb2, domain 7 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpb2, domain 7 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpb2, domain 5 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpb2, domain 5 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpb2, domain 2 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpb2, domain 2 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal RNA methyltransferase FtsJ domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal RNA methyltransferase FtsJ domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal Proteins L2, RNA binding domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal Proteins L2, RNA binding domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

S15/NS1, RNA-binding Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the S15/NS1, RNA-binding protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase II subunit A Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase II subunit A protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA/RNA-binding protein Kin17, conserved domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA/RNA-binding protein Kin17, conserved domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase II elongation factor ELL Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase II elongation factor ELL protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase I associated factor, A49-like Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase I associated factor, A49-like protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase III, subunit Rpc25 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase III, subunit Rpc25 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Steroid receptor RNA activator-protein/coat protein complex II, Sec31 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Steroid receptor RNA activator-protein/coat protein complex II, Sec31 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA helicase, ATP-dependent, SK12/DOB1 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA helicase, ATP-dependent, SK12/DOB1 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Poly(A)-specific ribonuclease, RNA-binding Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Poly(A)-specific ribonuclease, RNA-binding protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase Rpb2, domain 4 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase Rpb2, domain 4 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA-binding domain, S1, IF1 type Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA-binding domain, S1, IF1 type protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal RNA-processing protein 7 Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal RNA-processing protein 7 protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase delta subunit/Asxl Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase delta subunit/Asxl protein domain from the InterPro Predicted Protein Domain Annotations dataset.

S1-like RNA binding domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the S1-like RNA binding domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA-metabolising metallo-beta-lactamase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA-metabolising metallo-beta-lactamase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase III Rpc82, C -terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase III Rpc82, C -terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal RNA adenine dimethylase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal RNA adenine dimethylase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase II-associated protein 1, C-terminal Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase II-associated protein 1, C-terminal protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA polymerase, beta subunit, conserved site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA polymerase, beta subunit, conserved site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase, RBP11-like dimerisation domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase, RBP11-like dimerisation domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA cap guanine-N2 methyltransferase Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA cap guanine-N2 methyltransferase protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Ribosomal RNA adenine methylase transferase, conserved site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Ribosomal RNA adenine methylase transferase, conserved site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

Translation-associated RNA-binding, predicted Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the Translation-associated RNA-binding, predicted protein domain from the InterPro Predicted Protein Domain Annotations dataset.

RNA 3'-terminal phosphate cyclase domain Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the RNA 3'-terminal phosphate cyclase domain protein domain from the InterPro Predicted Protein Domain Annotations dataset.

DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site Gene Set

From InterPro Predicted Protein Domain Annotations

proteins predicted to have the DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site protein domain from the InterPro Predicted Protein Domain Annotations dataset.

rna polymerase Gene Set

From KEGG Pathways

proteins participating in the rna polymerase pathway from the KEGG Pathways dataset.

General transcription by RNA polymerase I Gene Set

From PANTHER Pathways

proteins participating in the General transcription by RNA polymerase I pathway from the PANTHER Pathways dataset.

rna-polymerase-ii Gene Set

From Phosphosite Textmining Biological Term Annotations

proteins co-occuring with the biological term rna-polymerase-ii in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset.

rna-messenger Gene Set

From Phosphosite Textmining Biological Term Annotations

proteins co-occuring with the biological term rna-messenger in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset.

rna Gene Set

From Phosphosite Textmining Biological Term Annotations

proteins co-occuring with the biological term rna in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset.

RNA Polymerase III Transcription Initiation From Type 3 Promoter Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase III Transcription Initiation From Type 3 Promoter pathway from the Reactome Pathways dataset.

RNA Polymerase I Transcription Initiation Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase I Transcription Initiation pathway from the Reactome Pathways dataset.

RNA Polymerase II Transcription Pre-Initiation And Promoter Opening Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase II Transcription Pre-Initiation And Promoter Opening pathway from the Reactome Pathways dataset.

RNA Polymerase III Transcription Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase III Transcription pathway from the Reactome Pathways dataset.

RNA Polymerase II Transcription Initiation And Promoter Clearance Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase II Transcription Initiation And Promoter Clearance pathway from the Reactome Pathways dataset.

Small interfering RNA (siRNA) biogenesis Gene Set

From Reactome Pathways 2014

proteins participating in the Small interfering RNA (siRNA) biogenesis pathway from the Reactome Pathways dataset.

RNA Polymerase I Promoter Clearance Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase I Promoter Clearance pathway from the Reactome Pathways dataset.

Inhibition of Host mRNA Processing and RNA Silencing Gene Set

From Reactome Pathways 2014

proteins participating in the Inhibition of Host mRNA Processing and RNA Silencing pathway from the Reactome Pathways dataset.

RNA Polymerase III Chain Elongation Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase III Chain Elongation pathway from the Reactome Pathways dataset.

RNA Polymerase I Promoter Escape Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase I Promoter Escape pathway from the Reactome Pathways dataset.

Viral Messenger RNA Synthesis Gene Set

From Reactome Pathways 2014

proteins participating in the Viral Messenger RNA Synthesis pathway from the Reactome Pathways dataset.

RNA Polymerase II Promoter Escape Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase II Promoter Escape pathway from the Reactome Pathways dataset.

RNA Polymerase I Chain Elongation Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase I Chain Elongation pathway from the Reactome Pathways dataset.

Influenza Viral RNA Transcription and Replication Gene Set

From Reactome Pathways 2014

proteins participating in the Influenza Viral RNA Transcription and Replication pathway from the Reactome Pathways dataset.

Formation of RNA Pol II elongation complex Gene Set

From Reactome Pathways 2014

proteins participating in the Formation of RNA Pol II elongation complex pathway from the Reactome Pathways dataset.

RNA Polymerase I Promoter Opening Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase I Promoter Opening pathway from the Reactome Pathways dataset.

Reverse Transcription of HIV RNA Gene Set

From Reactome Pathways 2014

proteins participating in the Reverse Transcription of HIV RNA pathway from the Reactome Pathways dataset.

RNA Polymerase II Transcription Elongation Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase II Transcription Elongation pathway from the Reactome Pathways dataset.

Regulatory RNA pathways Gene Set

From Reactome Pathways 2014

proteins participating in the Regulatory RNA pathways pathway from the Reactome Pathways dataset.

RNA Polymerase II Pre-transcription Events Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase II Pre-transcription Events pathway from the Reactome Pathways dataset.

PIWI-interacting RNA (piRNA) biogenesis Gene Set

From Reactome Pathways 2014

proteins participating in the PIWI-interacting RNA (piRNA) biogenesis pathway from the Reactome Pathways dataset.

Insulin-like Growth Factor-2 mRNA Binding Proteins (IGF2BPs/IMPs/VICKZs) bind RNA Gene Set

From Reactome Pathways 2014

proteins participating in the Insulin-like Growth Factor-2 mRNA Binding Proteins (IGF2BPs/IMPs/VICKZs) bind RNA pathway from the Reactome Pathways dataset.

RNA Polymerase III Transcription Termination Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase III Transcription Termination pathway from the Reactome Pathways dataset.

RNA Polymerase III Transcription Initiation From Type 1 Promoter Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase III Transcription Initiation From Type 1 Promoter pathway from the Reactome Pathways dataset.

RNA Pol II CTD phosphorylation and interaction with CE Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Pol II CTD phosphorylation and interaction with CE pathway from the Reactome Pathways dataset.

Metabolism of non-coding RNA Gene Set

From Reactome Pathways 2014

proteins participating in the Metabolism of non-coding RNA pathway from the Reactome Pathways dataset.

RNA Polymerase III Abortive And Retractive Initiation Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase III Abortive And Retractive Initiation pathway from the Reactome Pathways dataset.

RNA Polymerase III Transcription Initiation Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase III Transcription Initiation pathway from the Reactome Pathways dataset.

RNA Polymerase II Transcription Initiation Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase II Transcription Initiation pathway from the Reactome Pathways dataset.

RNA Polymerase II Transcription Termination Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase II Transcription Termination pathway from the Reactome Pathways dataset.

RNA Polymerase I Transcription Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase I Transcription pathway from the Reactome Pathways dataset.

RNA Polymerase III Transcription Initiation From Type 2 Promoter Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase III Transcription Initiation From Type 2 Promoter pathway from the Reactome Pathways dataset.

RNA Polymerase II Transcription Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase II Transcription pathway from the Reactome Pathways dataset.

RNA Polymerase II HIV Promoter Escape Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase II HIV Promoter Escape pathway from the Reactome Pathways dataset.

Rev-mediated nuclear export of HIV RNA Gene Set

From Reactome Pathways 2014

proteins participating in the Rev-mediated nuclear export of HIV RNA pathway from the Reactome Pathways dataset.

RNA Polymerase I Transcription Termination Gene Set

From Reactome Pathways 2014

proteins participating in the RNA Polymerase I Transcription Termination pathway from the Reactome Pathways dataset.

RNA interference(Homo sapiens) Gene Set

From WikiPathways Pathways 2014

proteins participating in the RNA interference(Homo sapiens) pathway from the WikiPathways Pathways 2014 dataset.

Rna Polymerase Iii-Related Leukodystrophy Gene Set

From DisGeNET Gene-Disease Associations

genes associated with the disease Rna Polymerase Iii-Related Leukodystrophy in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.

negative regulation of transcription by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of transcription by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription elongation by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription elongation by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA polymerase II preinitiation complex assembly Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA polymerase II preinitiation complex assembly biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription initiation by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription initiation by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

transcription by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the transcription by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of transcription by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of transcription by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of RNA splicing Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of RNA splicing biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA export from nucleus Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA export from nucleus biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA splicing Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA splicing biological process from the curated GO Biological Process Annotations 2023 dataset.

transcription elongation by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the transcription elongation by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of transcription elongation by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of transcription elongation by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

transcription initiation at RNA polymerase II promoter Gene Set

From GO Biological Process Annotations 2023

genes participating in the transcription initiation at RNA polymerase II promoter biological process from the curated GO Biological Process Annotations 2023 dataset.

mRNA transcription by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the mRNA transcription by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

snRNA transcription by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the snRNA transcription by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA splicing, via transesterification reactions Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA splicing, via transesterification reactions biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA processing Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA processing biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA secondary structure unwinding Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA secondary structure unwinding biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA catabolic process Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA catabolic process biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA-templated transcription Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA-templated transcription biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA-templated DNA biosynthetic process Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA-templated DNA biosynthetic process biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of transcription elongation by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of transcription elongation by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of RNA binding Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of RNA binding biological process from the curated GO Biological Process Annotations 2023 dataset.

transcription by RNA polymerase I Gene Set

From GO Biological Process Annotations 2023

genes participating in the transcription by RNA polymerase I biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of transcription initiation by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of transcription initiation by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of transcription by RNA polymerase III Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of transcription by RNA polymerase III biological process from the curated GO Biological Process Annotations 2023 dataset.

transcription by RNA polymerase III Gene Set

From GO Biological Process Annotations 2023

genes participating in the transcription by RNA polymerase III biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA metabolic process Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA metabolic process biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of RNA polymerase II regulatory region sequence-specific DNA binding Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of RNA polymerase II regulatory region sequence-specific DNA binding biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of transcription by RNA polymerase I Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of transcription by RNA polymerase I biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription by RNA polymerase I Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription by RNA polymerase I biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription by RNA polymerase III Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription by RNA polymerase III biological process from the curated GO Biological Process Annotations 2023 dataset.

telomerase RNA stabilization Gene Set

From GO Biological Process Annotations 2023

genes participating in the telomerase RNA stabilization biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of telomerase RNA localization to Cajal body Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of telomerase RNA localization to Cajal body biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of telomerase RNA localization to Cajal body Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of telomerase RNA localization to Cajal body biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of RNA biosynthetic process Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of RNA biosynthetic process biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of RNA splicing Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of RNA splicing biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA-mediated gene silencing Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA-mediated gene silencing biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of transcription of nucleolar large rRNA by RNA polymerase I Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of transcription of nucleolar large rRNA by RNA polymerase I biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of RNA biosynthetic process Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of RNA biosynthetic process biological process from the curated GO Biological Process Annotations 2023 dataset.

snRNA transcription by RNA polymerase III Gene Set

From GO Biological Process Annotations 2023

genes participating in the snRNA transcription by RNA polymerase III biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA destabilization Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA destabilization biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA import into nucleus Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA import into nucleus biological process from the curated GO Biological Process Annotations 2023 dataset.

box H/ACA RNA 3'-end processing Gene Set

From GO Biological Process Annotations 2023

genes participating in the box H/ACA RNA 3'-end processing biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA phosphodiester bond hydrolysis, exonucleolytic Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA phosphodiester bond hydrolysis, exonucleolytic biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of RNA splicing Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of RNA splicing biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of transcription from RNA polymerase II promoter in response to stress Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of transcription from RNA polymerase II promoter in response to stress biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA decapping Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA decapping biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of RNA biosynthetic process Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of RNA biosynthetic process biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription from RNA polymerase II promoter in response to stress Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription from RNA polymerase II promoter in response to stress biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of RNA polymerase II transcription preinitiation complex assembly Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of RNA polymerase II transcription preinitiation complex assembly biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA phosphodiester bond hydrolysis Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA phosphodiester bond hydrolysis biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of RNA polymerase II transcription preinitiation complex assembly Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of RNA polymerase II transcription preinitiation complex assembly biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of transcription from RNA polymerase II promoter in response to oxidative stress Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of transcription from RNA polymerase II promoter in response to oxidative stress biological process from the curated GO Biological Process Annotations 2023 dataset.

DNA replication, synthesis of RNA primer Gene Set

From GO Biological Process Annotations 2023

genes participating in the DNA replication, synthesis of RNA primer biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA phosphodiester bond hydrolysis, endonucleolytic Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA phosphodiester bond hydrolysis, endonucleolytic biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of single stranded viral RNA replication via double stranded DNA intermediate Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of single stranded viral RNA replication via double stranded DNA intermediate biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of single stranded viral RNA replication via double stranded DNA intermediate Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of single stranded viral RNA replication via double stranded DNA intermediate biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of RNA export from nucleus Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of RNA export from nucleus biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of snRNA transcription by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of snRNA transcription by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription from RNA polymerase II promoter in response to hypoxia Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription from RNA polymerase II promoter in response to hypoxia biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of transcription from RNA polymerase II promoter in response to stress Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of transcription from RNA polymerase II promoter in response to stress biological process from the curated GO Biological Process Annotations 2023 dataset.

transcription initiation at RNA polymerase I promoter Gene Set

From GO Biological Process Annotations 2023

genes participating in the transcription initiation at RNA polymerase I promoter biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription of nucleolar large rRNA by RNA polymerase I Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription of nucleolar large rRNA by RNA polymerase I biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of RNA metabolic process Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of RNA metabolic process biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of transcription from RNA polymerase II promoter by glucose Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of transcription from RNA polymerase II promoter by glucose biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription from RNA polymerase II promoter by glucose Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription from RNA polymerase II promoter by glucose biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA transport Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA transport biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of telomerase RNA reverse transcriptase activity Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of telomerase RNA reverse transcriptase activity biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of transcription by RNA polymerase III Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of transcription by RNA polymerase III biological process from the curated GO Biological Process Annotations 2023 dataset.

modulation by host of viral RNA genome replication Gene Set

From GO Biological Process Annotations 2023

genes participating in the modulation by host of viral RNA genome replication biological process from the curated GO Biological Process Annotations 2023 dataset.

DNA replication, removal of RNA primer Gene Set

From GO Biological Process Annotations 2023

genes participating in the DNA replication, removal of RNA primer biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of transcription from RNA polymerase II promoter in response to hypoxia Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of transcription from RNA polymerase II promoter in response to hypoxia biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA polyadenylation Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA polyadenylation biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of RNA export from nucleus Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of RNA export from nucleus biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of single stranded viral RNA replication via double stranded DNA intermediate Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of single stranded viral RNA replication via double stranded DNA intermediate biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of transcription by RNA polymerase I Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of transcription by RNA polymerase I biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA polymerase II promoter clearance Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA polymerase II promoter clearance biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of establishment of RNA localization to telomere Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of establishment of RNA localization to telomere biological process from the curated GO Biological Process Annotations 2023 dataset.

termination of RNA polymerase II transcription Gene Set

From GO Biological Process Annotations 2023

genes participating in the termination of RNA polymerase II transcription biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription from RNA polymerase II promoter involved in norepinephrine biosynthetic process Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription from RNA polymerase II promoter involved in norepinephrine biosynthetic process biological process from the curated GO Biological Process Annotations 2023 dataset.

transcriptional start site selection at RNA polymerase II promoter Gene Set

From GO Biological Process Annotations 2023

genes participating in the transcriptional start site selection at RNA polymerase II promoter biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA polymerase II core complex assembly Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA polymerase II core complex assembly biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA localization to chromatin Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA localization to chromatin biological process from the curated GO Biological Process Annotations 2023 dataset.

regulation of RNA export from nucleus Gene Set

From GO Biological Process Annotations 2023

genes participating in the regulation of RNA export from nucleus biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of RNA binding Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of RNA binding biological process from the curated GO Biological Process Annotations 2023 dataset.

5S class rRNA transcription by RNA polymerase III Gene Set

From GO Biological Process Annotations 2023

genes participating in the 5S class rRNA transcription by RNA polymerase III biological process from the curated GO Biological Process Annotations 2023 dataset.

tRNA transcription by RNA polymerase III Gene Set

From GO Biological Process Annotations 2023

genes participating in the tRNA transcription by RNA polymerase III biological process from the curated GO Biological Process Annotations 2023 dataset.

single stranded viral RNA replication via double stranded DNA intermediate Gene Set

From GO Biological Process Annotations 2023

genes participating in the single stranded viral RNA replication via double stranded DNA intermediate biological process from the curated GO Biological Process Annotations 2023 dataset.

establishment of RNA localization to telomere Gene Set

From GO Biological Process Annotations 2023

genes participating in the establishment of RNA localization to telomere biological process from the curated GO Biological Process Annotations 2023 dataset.

oxidative RNA demethylation Gene Set

From GO Biological Process Annotations 2023

genes participating in the oxidative RNA demethylation biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA repair Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA repair biological process from the curated GO Biological Process Annotations 2023 dataset.

positive regulation of transcription from RNA polymerase II promoter by galactose Gene Set

From GO Biological Process Annotations 2023

genes participating in the positive regulation of transcription from RNA polymerase II promoter by galactose biological process from the curated GO Biological Process Annotations 2023 dataset.

box C/D RNA 3'-end processing Gene Set

From GO Biological Process Annotations 2023

genes participating in the box C/D RNA 3'-end processing biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA polymerase I preinitiation complex assembly Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA polymerase I preinitiation complex assembly biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of transcription initiation by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of transcription initiation by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA methylation Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA methylation biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA 3'-end processing Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA 3'-end processing biological process from the curated GO Biological Process Annotations 2023 dataset.

RNA 3' uridylation Gene Set

From GO Biological Process Annotations 2023

genes participating in the RNA 3' uridylation biological process from the curated GO Biological Process Annotations 2023 dataset.

termination of RNA polymerase I transcription Gene Set

From GO Biological Process Annotations 2023

genes participating in the termination of RNA polymerase I transcription biological process from the curated GO Biological Process Annotations 2023 dataset.

negative regulation of snRNA transcription by RNA polymerase II Gene Set

From GO Biological Process Annotations 2023

genes participating in the negative regulation of snRNA transcription by RNA polymerase II biological process from the curated GO Biological Process Annotations 2023 dataset.

oxidative single-stranded RNA demethylation Gene Set

From GO Biological Process Annotations 2023

genes participating in the oxidative single-stranded RNA demethylation biological process from the curated GO Biological Process Annotations 2023 dataset.